data_7ZI8 # _model_server_result.job_id a-2a9aQZ61MAzl1XYhCADA _model_server_result.datetime_utc '2024-11-13 06:05:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":402}' # _entry.id 7ZI8 # _exptl.entry_id 7ZI8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 543.729 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-[[2-methyl-5-[6-[2-(4-methylpiperazin-1-yl)ethyl]pyridin-3-yl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZI8 _cell.length_a 68.618 _cell.length_b 68.618 _cell.length_c 121.247 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.266 ? metalc ? metalc4 D NA NA . A NA 403 1_555 E O HOH . A HOH 529 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.372 ? # _chem_comp.formula 'C29 H37 N9 S' _chem_comp.formula_weight 543.729 _chem_comp.id J5U _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-[[2-methyl-5-[6-[2-(4-methylpiperazin-1-yl)ethyl]pyridin-3-yl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 J5U sing 173 n n C27 C28 J5U doub 174 n y C27 C26 J5U sing 175 n y C28 C11 J5U sing 176 n y N5 C9 J5U sing 177 n n C26 C13 J5U doub 178 n y C9 C8 J5U doub 179 n y C9 N6 J5U sing 180 n y C8 C7 J5U sing 181 n y N6 C6 J5U doub 182 n y C7 N4 J5U sing 183 n n C7 N3 J5U doub 184 n y C11 N1 J5U sing 185 n n C11 C12 J5U doub 186 n y C6 N3 J5U sing 187 n y C6 C5 J5U sing 188 n n C5 N2 J5U sing 189 n y C5 C10 J5U doub 190 n y N2 C4 J5U doub 191 n y N1 C3 J5U sing 192 n n N1 C4 J5U sing 193 n n C3 C2 J5U sing 194 n n C10 S1 J5U sing 195 n y C4 S1 J5U sing 196 n y C13 C12 J5U sing 197 n y C13 C14 J5U sing 198 n n C1 C2 J5U sing 199 n n C15 C14 J5U doub 200 n y C15 C16 J5U sing 201 n y C14 C25 J5U sing 202 n y C16 C17 J5U doub 203 n y C25 N9 J5U doub 204 n y C17 N9 J5U sing 205 n y C17 C18 J5U sing 206 n n C19 C18 J5U sing 207 n n C19 N7 J5U sing 208 n n C20 N7 J5U sing 209 n n C20 C21 J5U sing 210 n n N7 C24 J5U sing 211 n n C24 C23 J5U sing 212 n n C21 N8 J5U sing 213 n n C23 N8 J5U sing 214 n n C22 N8 J5U sing 215 n n C8 H1 J5U sing 216 n n C10 H2 J5U sing 217 n n C12 H3 J5U sing 218 n n C3 H4 J5U sing 219 n n C3 H5 J5U sing 220 n n C1 H6 J5U sing 221 n n C1 H7 J5U sing 222 n n C1 H8 J5U sing 223 n n C2 H9 J5U sing 224 n n C2 H10 J5U sing 225 n n N4 H11 J5U sing 226 n n N4 H12 J5U sing 227 n n N5 H13 J5U sing 228 n n N5 H14 J5U sing 229 n n C15 H15 J5U sing 230 n n C16 H16 J5U sing 231 n n C18 H17 J5U sing 232 n n C18 H18 J5U sing 233 n n C19 H19 J5U sing 234 n n C19 H20 J5U sing 235 n n C20 H22 J5U sing 236 n n C20 H23 J5U sing 237 n n C21 H24 J5U sing 238 n n C21 H25 J5U sing 239 n n C22 H27 J5U sing 240 n n C22 H28 J5U sing 241 n n C22 H29 J5U sing 242 n n C23 H30 J5U sing 243 n n C23 H31 J5U sing 244 n n C24 H32 J5U sing 245 n n C24 H33 J5U sing 246 n n C25 H34 J5U sing 247 n n C26 H35 J5U sing 248 n n C27 H36 J5U sing 249 n n C29 H37 J5U sing 250 n n C29 H38 J5U sing 251 n n C29 H39 J5U sing 252 n n # _atom_sites.entry_id 7ZI8 _atom_sites.fract_transf_matrix[1][1] 0.014573 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014573 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008248 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 401 401 UDP UDP . C 3 J5U A 1 402 402 J5U DRG . D 4 NA A 1 403 1 NA NA . E 5 HOH A 1 501 17 HOH HOH . E 5 HOH A 2 502 31 HOH HOH . E 5 HOH A 3 503 21 HOH HOH . E 5 HOH A 4 504 19 HOH HOH . E 5 HOH A 5 505 15 HOH HOH . E 5 HOH A 6 506 4 HOH HOH . E 5 HOH A 7 507 2 HOH HOH . E 5 HOH A 8 508 1 HOH HOH . E 5 HOH A 9 509 13 HOH HOH . E 5 HOH A 10 510 14 HOH HOH . E 5 HOH A 11 511 32 HOH HOH . E 5 HOH A 12 512 9 HOH HOH . E 5 HOH A 13 513 27 HOH HOH . E 5 HOH A 14 514 25 HOH HOH . E 5 HOH A 15 515 20 HOH HOH . E 5 HOH A 16 516 24 HOH HOH . E 5 HOH A 17 517 33 HOH HOH . E 5 HOH A 18 518 12 HOH HOH . E 5 HOH A 19 519 6 HOH HOH . E 5 HOH A 20 520 23 HOH HOH . E 5 HOH A 21 521 3 HOH HOH . E 5 HOH A 22 522 29 HOH HOH . E 5 HOH A 23 523 18 HOH HOH . E 5 HOH A 24 524 5 HOH HOH . E 5 HOH A 25 525 10 HOH HOH . E 5 HOH A 26 526 28 HOH HOH . E 5 HOH A 27 527 26 HOH HOH . E 5 HOH A 28 528 22 HOH HOH . E 5 HOH A 29 529 7 HOH HOH . E 5 HOH A 30 530 11 HOH HOH . E 5 HOH A 31 531 16 HOH HOH . E 5 HOH A 32 532 8 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 J5U . . . C 3 -11.676 -31.576 10.116 1 48.61 ? C4 J5U 402 A 1 HETATM 2 C C14 J5U . . . C 3 -10.247 -36.735 11.469 1 61.89 ? C14 J5U 402 A 1 HETATM 3 C C5 J5U . . . C 3 -10.835 -29.54 9.94 1 42.91 ? C5 J5U 402 A 1 HETATM 4 C C6 J5U . . . C 3 -10.947 -28.113 9.794 1 46.01 ? C6 J5U 402 A 1 HETATM 5 C C11 J5U . . . C 3 -12.14 -33.918 9.783 1 48.37 ? C11 J5U 402 A 1 HETATM 6 C C7 J5U . . . C 3 -12.356 -26.323 9.723 1 47.64 ? C7 J5U 402 A 1 HETATM 7 C C8 J5U . . . C 3 -11.285 -25.467 9.467 1 43.63 ? C8 J5U 402 A 1 HETATM 8 C C9 J5U . . . C 3 -10.012 -26.065 9.364 1 44.98 ? C9 J5U 402 A 1 HETATM 9 C C10 J5U . . . C 3 -9.67 -30.221 10.101 1 47.85 ? C10 J5U 402 A 1 HETATM 10 C C12 J5U . . . C 3 -11.477 -34.677 10.75 1 53.15 ? C12 J5U 402 A 1 HETATM 11 C C13 J5U . . . C 3 -11 -35.956 10.455 1 51.55 ? C13 J5U 402 A 1 HETATM 12 N N1 J5U . . . C 3 -12.565 -32.585 10.059 1 52.7 ? N1 J5U 402 A 1 HETATM 13 N N2 J5U . . . C 3 -11.986 -30.32 9.96 1 43.32 ? N2 J5U 402 A 1 HETATM 14 C C3 J5U . . . C 3 -14.018 -32.306 10.061 1 58.9 ? C3 J5U 402 A 1 HETATM 15 N N3 J5U . . . C 3 -12.171 -27.624 9.889 1 49.98 ? N3 J5U 402 A 1 HETATM 16 C C1 J5U . . . C 3 -16.126 -31.89 11.306 1 67.12 ? C1 J5U 402 A 1 HETATM 17 C C2 J5U . . . C 3 -14.639 -32.185 11.438 1 62.18 ? C2 J5U 402 A 1 HETATM 18 N N4 J5U . . . C 3 -13.613 -25.907 9.843 1 52.01 ? N4 J5U 402 A 1 HETATM 19 N N5 J5U . . . C 3 -8.898 -25.34 9.117 1 43.82 ? N5 J5U 402 A 1 HETATM 20 N N6 J5U . . . C 3 -9.857 -27.383 9.517 1 43.03 ? N6 J5U 402 A 1 HETATM 21 S S1 J5U . . . C 3 -9.984 -31.904 10.217 1 47.67 ? S1 J5U 402 A 1 HETATM 22 C C15 J5U . . . C 3 -10.047 -38.114 11.404 1 69.54 ? C15 J5U 402 A 1 HETATM 23 C C16 J5U . . . C 3 -9.292 -38.763 12.364 1 71.1 ? C16 J5U 402 A 1 HETATM 24 C C17 J5U . . . C 3 -8.666 -38.015 13.348 1 82.61 ? C17 J5U 402 A 1 HETATM 25 C C18 J5U . . . C 3 -7.863 -38.581 14.497 1 90.71 ? C18 J5U 402 A 1 HETATM 26 C C19 J5U . . . C 3 -6.992 -39.824 14.306 1 93.77 ? C19 J5U 402 A 1 HETATM 27 N N7 J5U . . . C 3 -5.945 -39.916 15.343 1 99.24 ? N7 J5U 402 A 1 HETATM 28 C C20 J5U . . . C 3 -5.187 -41.183 15.336 1 103.48 ? C20 J5U 402 A 1 HETATM 29 C C21 J5U . . . C 3 -5.042 -41.794 16.719 1 109.27 ? C21 J5U 402 A 1 HETATM 30 N N8 J5U . . . C 3 -4.577 -40.865 17.752 1 103.34 ? N8 J5U 402 A 1 HETATM 31 C C22 J5U . . . C 3 -3.121 -40.691 17.72 1 101.64 ? C22 J5U 402 A 1 HETATM 32 C C23 J5U . . . C 3 -5.295 -39.594 17.697 1 100.54 ? C23 J5U 402 A 1 HETATM 33 C C24 J5U . . . C 3 -6.441 -39.65 16.713 1 103.78 ? C24 J5U 402 A 1 HETATM 34 N N9 J5U . . . C 3 -8.819 -36.685 13.405 1 79.24 ? N9 J5U 402 A 1 HETATM 35 C C25 J5U . . . C 3 -9.559 -36.07 12.476 1 71.11 ? C25 J5U 402 A 1 HETATM 36 C C26 J5U . . . C 3 -11.173 -36.434 9.162 1 48.11 ? C26 J5U 402 A 1 HETATM 37 C C27 J5U . . . C 3 -11.839 -35.69 8.206 1 50.15 ? C27 J5U 402 A 1 HETATM 38 C C28 J5U . . . C 3 -12.299 -34.406 8.492 1 46.11 ? C28 J5U 402 A 1 HETATM 39 C C29 J5U . . . C 3 -12.96 -33.597 7.44 1 52.95 ? C29 J5U 402 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 253 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 39 #