data_7ZI9 # _model_server_result.job_id KRFnr4Y712NqWpj1k6NFZQ _model_server_result.datetime_utc '2024-11-17 04:45:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ZI9 # _exptl.entry_id 7ZI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 578.752 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-[[2-methyl-5-[4-(4-methylpiperazin-1-yl)sulfonylphenyl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZI9 _cell.length_a 69.051 _cell.length_b 69.051 _cell.length_c 121.638 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'C28 H34 N8 O2 S2' _chem_comp.formula_weight 578.752 _chem_comp.id J6M _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-[[2-methyl-5-[4-(4-methylpiperazin-1-yl)sulfonylphenyl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C28 C27 J6M sing 173 n n C26 C27 J6M doub 174 n y C26 C25 J6M sing 175 n y C27 C11 J6M sing 176 n y N4 C7 J6M sing 177 n n C7 C8 J6M doub 178 n y C7 N3 J6M sing 179 n y C25 C13 J6M doub 180 n y C8 C9 J6M sing 181 n y N3 C6 J6M doub 182 n y C9 N5 J6M sing 183 n n C9 N6 J6M doub 184 n y C6 N6 J6M sing 185 n y C6 C5 J6M sing 186 n n C11 N1 J6M sing 187 n n C11 C12 J6M doub 188 n y C5 N2 J6M sing 189 n y C5 C10 J6M doub 190 n y N2 C4 J6M doub 191 n y C3 N1 J6M sing 192 n n C3 C2 J6M sing 193 n n N1 C4 J6M sing 194 n n C10 S1 J6M sing 195 n y C4 S1 J6M sing 196 n y C13 C12 J6M sing 197 n y C13 C14 J6M sing 198 n n C1 C2 J6M sing 199 n n C24 C14 J6M doub 200 n y C24 C23 J6M sing 201 n y C14 C15 J6M sing 202 n y C23 C17 J6M doub 203 n y C20 N8 J6M sing 204 n n C15 C16 J6M doub 205 n y C18 C19 J6M sing 206 n n C18 N7 J6M sing 207 n n C19 N8 J6M sing 208 n n C17 C16 J6M sing 209 n y C17 S2 J6M sing 210 n n N8 C21 J6M sing 211 n n N7 S2 J6M sing 212 n n N7 C22 J6M sing 213 n n O1 S2 J6M doub 214 n n S2 O2 J6M doub 215 n n C22 C21 J6M sing 216 n n C8 H1 J6M sing 217 n n C10 H2 J6M sing 218 n n C15 H3 J6M sing 219 n n C20 H4 J6M sing 220 n n C20 H5 J6M sing 221 n n C20 H6 J6M sing 222 n n C21 H7 J6M sing 223 n n C21 H8 J6M sing 224 n n C22 H9 J6M sing 225 n n C22 H10 J6M sing 226 n n C24 H11 J6M sing 227 n n C26 H12 J6M sing 228 n n C28 H13 J6M sing 229 n n C28 H14 J6M sing 230 n n C28 H15 J6M sing 231 n n C1 H16 J6M sing 232 n n C1 H17 J6M sing 233 n n C1 H18 J6M sing 234 n n C2 H19 J6M sing 235 n n C2 H20 J6M sing 236 n n C3 H21 J6M sing 237 n n C3 H22 J6M sing 238 n n N4 H23 J6M sing 239 n n N4 H24 J6M sing 240 n n N5 H25 J6M sing 241 n n N5 H26 J6M sing 242 n n C12 H27 J6M sing 243 n n C16 H28 J6M sing 244 n n C18 H29 J6M sing 245 n n C18 H30 J6M sing 246 n n C19 H31 J6M sing 247 n n C19 H32 J6M sing 248 n n C23 H34 J6M sing 249 n n C25 H35 J6M sing 250 n n # _atom_sites.entry_id 7ZI9 _atom_sites.fract_transf_matrix[1][1] 0.014482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 301 UDP UDP . C 3 J6M A 1 302 302 J6M LIG . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 110 HOH HOH . E 5 HOH A 2 402 4 HOH HOH . E 5 HOH A 3 403 107 HOH HOH . E 5 HOH A 4 404 90 HOH HOH . E 5 HOH A 5 405 108 HOH HOH . E 5 HOH A 6 406 75 HOH HOH . E 5 HOH A 7 407 32 HOH HOH . E 5 HOH A 8 408 111 HOH HOH . E 5 HOH A 9 409 35 HOH HOH . E 5 HOH A 10 410 29 HOH HOH . E 5 HOH A 11 411 72 HOH HOH . E 5 HOH A 12 412 82 HOH HOH . E 5 HOH A 13 413 1 HOH HOH . E 5 HOH A 14 414 28 HOH HOH . E 5 HOH A 15 415 66 HOH HOH . E 5 HOH A 16 416 102 HOH HOH . E 5 HOH A 17 417 92 HOH HOH . E 5 HOH A 18 418 61 HOH HOH . E 5 HOH A 19 419 116 HOH HOH . E 5 HOH A 20 420 97 HOH HOH . E 5 HOH A 21 421 18 HOH HOH . E 5 HOH A 22 422 50 HOH HOH . E 5 HOH A 23 423 44 HOH HOH . E 5 HOH A 24 424 64 HOH HOH . E 5 HOH A 25 425 52 HOH HOH . E 5 HOH A 26 426 48 HOH HOH . E 5 HOH A 27 427 22 HOH HOH . E 5 HOH A 28 428 41 HOH HOH . E 5 HOH A 29 429 45 HOH HOH . E 5 HOH A 30 430 11 HOH HOH . E 5 HOH A 31 431 80 HOH HOH . E 5 HOH A 32 432 43 HOH HOH . E 5 HOH A 33 433 9 HOH HOH . E 5 HOH A 34 434 23 HOH HOH . E 5 HOH A 35 435 19 HOH HOH . E 5 HOH A 36 436 70 HOH HOH . E 5 HOH A 37 437 33 HOH HOH . E 5 HOH A 38 438 85 HOH HOH . E 5 HOH A 39 439 26 HOH HOH . E 5 HOH A 40 440 59 HOH HOH . E 5 HOH A 41 441 31 HOH HOH . E 5 HOH A 42 442 109 HOH HOH . E 5 HOH A 43 443 100 HOH HOH . E 5 HOH A 44 444 14 HOH HOH . E 5 HOH A 45 445 20 HOH HOH . E 5 HOH A 46 446 5 HOH HOH . E 5 HOH A 47 447 10 HOH HOH . E 5 HOH A 48 448 57 HOH HOH . E 5 HOH A 49 449 71 HOH HOH . E 5 HOH A 50 450 37 HOH HOH . E 5 HOH A 51 451 13 HOH HOH . E 5 HOH A 52 452 27 HOH HOH . E 5 HOH A 53 453 15 HOH HOH . E 5 HOH A 54 454 17 HOH HOH . E 5 HOH A 55 455 88 HOH HOH . E 5 HOH A 56 456 8 HOH HOH . E 5 HOH A 57 457 7 HOH HOH . E 5 HOH A 58 458 21 HOH HOH . E 5 HOH A 59 459 79 HOH HOH . E 5 HOH A 60 460 67 HOH HOH . E 5 HOH A 61 461 46 HOH HOH . E 5 HOH A 62 462 12 HOH HOH . E 5 HOH A 63 463 56 HOH HOH . E 5 HOH A 64 464 69 HOH HOH . E 5 HOH A 65 465 38 HOH HOH . E 5 HOH A 66 466 24 HOH HOH . E 5 HOH A 67 467 58 HOH HOH . E 5 HOH A 68 468 76 HOH HOH . E 5 HOH A 69 469 65 HOH HOH . E 5 HOH A 70 470 40 HOH HOH . E 5 HOH A 71 471 6 HOH HOH . E 5 HOH A 72 472 77 HOH HOH . E 5 HOH A 73 473 54 HOH HOH . E 5 HOH A 74 474 49 HOH HOH . E 5 HOH A 75 475 104 HOH HOH . E 5 HOH A 76 476 81 HOH HOH . E 5 HOH A 77 477 2 HOH HOH . E 5 HOH A 78 478 60 HOH HOH . E 5 HOH A 79 479 87 HOH HOH . E 5 HOH A 80 480 39 HOH HOH . E 5 HOH A 81 481 16 HOH HOH . E 5 HOH A 82 482 3 HOH HOH . E 5 HOH A 83 483 47 HOH HOH . E 5 HOH A 84 484 112 HOH HOH . E 5 HOH A 85 485 25 HOH HOH . E 5 HOH A 86 486 73 HOH HOH . E 5 HOH A 87 487 42 HOH HOH . E 5 HOH A 88 488 53 HOH HOH . E 5 HOH A 89 489 113 HOH HOH . E 5 HOH A 90 490 51 HOH HOH . E 5 HOH A 91 491 36 HOH HOH . E 5 HOH A 92 492 99 HOH HOH . E 5 HOH A 93 493 101 HOH HOH . E 5 HOH A 94 494 89 HOH HOH . E 5 HOH A 95 495 98 HOH HOH . E 5 HOH A 96 496 103 HOH HOH . E 5 HOH A 97 497 106 HOH HOH . E 5 HOH A 98 498 117 HOH HOH . E 5 HOH A 99 499 91 HOH HOH . E 5 HOH A 100 500 118 HOH HOH . E 5 HOH A 101 501 74 HOH HOH . E 5 HOH A 102 502 94 HOH HOH . E 5 HOH A 103 503 84 HOH HOH . E 5 HOH A 104 504 30 HOH HOH . E 5 HOH A 105 505 62 HOH HOH . E 5 HOH A 106 506 55 HOH HOH . E 5 HOH A 107 507 114 HOH HOH . E 5 HOH A 108 508 105 HOH HOH . E 5 HOH A 109 509 96 HOH HOH . E 5 HOH A 110 510 93 HOH HOH . E 5 HOH A 111 511 34 HOH HOH . E 5 HOH A 112 512 115 HOH HOH . E 5 HOH A 113 513 68 HOH HOH . E 5 HOH A 114 514 63 HOH HOH . E 5 HOH A 115 515 78 HOH HOH . E 5 HOH A 116 516 95 HOH HOH . E 5 HOH A 117 517 83 HOH HOH . E 5 HOH A 118 518 86 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J6M . . . C 3 -12.877 -32.494 10.155 1 37.51 ? N1 J6M 302 A 1 HETATM 2 N N3 J6M . . . C 3 -9.908 -27.494 9.617 1 25.94 ? N3 J6M 302 A 1 HETATM 3 C C4 J6M . . . C 3 -11.903 -31.594 10.196 1 29.37 ? C4 J6M 302 A 1 HETATM 4 C C5 J6M . . . C 3 -10.96 -29.609 10.024 1 27.35 ? C5 J6M 302 A 1 HETATM 5 C C6 J6M . . . C 3 -11.024 -28.163 9.873 1 29.24 ? C6 J6M 302 A 1 HETATM 6 C C7 J6M . . . C 3 -9.97 -26.162 9.488 1 26.37 ? C7 J6M 302 A 1 HETATM 7 C C8 J6M . . . C 3 -11.176 -25.486 9.524 1 26.85 ? C8 J6M 302 A 1 HETATM 8 C C10 J6M . . . C 3 -9.836 -30.365 10.162 1 28.49 ? C10 J6M 302 A 1 HETATM 9 C C13 J6M . . . C 3 -11.955 -36.01 10.822 1 41.32 ? C13 J6M 302 A 1 HETATM 10 C C15 J6M . . . C 3 -10.99 -36.525 13.088 1 46.91 ? C15 J6M 302 A 1 HETATM 11 C C17 J6M . . . C 3 -11.272 -38.682 14.074 1 46.44 ? C17 J6M 302 A 1 HETATM 12 C C20 J6M . . . C 3 -6.387 -40.152 13.068 1 64.12 ? C20 J6M 302 A 1 HETATM 13 C C21 J6M . . . C 3 -6.938 -40.191 15.445 1 64.12 ? C21 J6M 302 A 1 HETATM 14 C C22 J6M . . . C 3 -8.251 -39.422 15.372 1 59.57 ? C22 J6M 302 A 1 HETATM 15 C C24 J6M . . . C 3 -12.206 -38.232 11.924 1 48.41 ? C24 J6M 302 A 1 HETATM 16 C C26 J6M . . . C 3 -12.112 -35.653 8.437 1 37.89 ? C26 J6M 302 A 1 HETATM 17 C C28 J6M . . . C 3 -12.702 -33.419 7.495 1 36.28 ? C28 J6M 302 A 1 HETATM 18 C C1 J6M . . . C 3 -16.474 -32.013 11.397 1 42.62 ? C1 J6M 302 A 1 HETATM 19 C C2 J6M . . . C 3 -14.95 -32.12 11.513 1 40.39 ? C2 J6M 302 A 1 HETATM 20 C C3 J6M . . . C 3 -14.304 -32.11 10.149 1 37.18 ? C3 J6M 302 A 1 HETATM 21 N N2 J6M . . . C 3 -12.149 -30.327 10.085 1 31.26 ? N2 J6M 302 A 1 HETATM 22 N N4 J6M . . . C 3 -8.84 -25.513 9.254 1 27.01 ? N4 J6M 302 A 1 HETATM 23 C C9 J6M . . . C 3 -12.298 -26.265 9.791 1 28.72 ? C9 J6M 302 A 1 HETATM 24 N N5 J6M . . . C 3 -13.487 -25.712 9.922 1 30.61 ? N5 J6M 302 A 1 HETATM 25 N N6 J6M . . . C 3 -12.218 -27.576 9.975 1 27.65 ? N6 J6M 302 A 1 HETATM 26 S S1 J6M . . . C 3 -10.237 -32.036 10.299 1 29.68 ? S1 J6M 302 A 1 HETATM 27 C C11 J6M . . . C 3 -12.55 -33.856 9.952 1 33.11 ? C11 J6M 302 A 1 HETATM 28 C C12 J6M . . . C 3 -12.298 -34.678 11.032 1 38.53 ? C12 J6M 302 A 1 HETATM 29 C C14 J6M . . . C 3 -11.71 -36.925 11.962 1 44.32 ? C14 J6M 302 A 1 HETATM 30 C C16 J6M . . . C 3 -10.75 -37.398 14.134 1 47.77 ? C16 J6M 302 A 1 HETATM 31 S S2 J6M . . . C 3 -10.905 -39.83 15.361 1 48.55 ? S2 J6M 302 A 1 HETATM 32 O O1 J6M . . . C 3 -11.761 -40.953 15.168 1 49.87 ? O1 J6M 302 A 1 HETATM 33 O O2 J6M . . . C 3 -10.859 -39.12 16.602 1 51.03 ? O2 J6M 302 A 1 HETATM 34 N N7 J6M . . . C 3 -9.366 -40.349 15.08 1 60.32 ? N7 J6M 302 A 1 HETATM 35 C C18 J6M . . . C 3 -9.129 -41.112 13.838 1 61.86 ? C18 J6M 302 A 1 HETATM 36 C C19 J6M . . . C 3 -7.824 -41.879 13.969 1 65.18 ? C19 J6M 302 A 1 HETATM 37 N N8 J6M . . . C 3 -6.692 -40.986 14.236 1 71.33 ? N8 J6M 302 A 1 HETATM 38 C C23 J6M . . . C 3 -11.972 -39.114 12.964 1 49.56 ? C23 J6M 302 A 1 HETATM 39 C C25 J6M . . . C 3 -11.838 -36.476 9.513 1 36.93 ? C25 J6M 302 A 1 HETATM 40 C C27 J6M . . . C 3 -12.451 -34.32 8.646 1 33.29 ? C27 J6M 302 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 301 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 40 #