data_7ZI9 # _model_server_result.job_id RRTJ4W2GIkcCcXS-WBkMpQ _model_server_result.datetime_utc '2024-11-17 04:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zi9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7ZI9 # _exptl.entry_id 7ZI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZI9 _cell.length_a 69.051 _cell.length_b 69.051 _cell.length_c 121.638 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.353 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.344 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 499 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 505 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZI9 _atom_sites.fract_transf_matrix[1][1] 0.014482 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014482 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008221 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 301 UDP UDP . C 3 J6M A 1 302 302 J6M LIG . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 110 HOH HOH . E 5 HOH A 2 402 4 HOH HOH . E 5 HOH A 3 403 107 HOH HOH . E 5 HOH A 4 404 90 HOH HOH . E 5 HOH A 5 405 108 HOH HOH . E 5 HOH A 6 406 75 HOH HOH . E 5 HOH A 7 407 32 HOH HOH . E 5 HOH A 8 408 111 HOH HOH . E 5 HOH A 9 409 35 HOH HOH . E 5 HOH A 10 410 29 HOH HOH . E 5 HOH A 11 411 72 HOH HOH . E 5 HOH A 12 412 82 HOH HOH . E 5 HOH A 13 413 1 HOH HOH . E 5 HOH A 14 414 28 HOH HOH . E 5 HOH A 15 415 66 HOH HOH . E 5 HOH A 16 416 102 HOH HOH . E 5 HOH A 17 417 92 HOH HOH . E 5 HOH A 18 418 61 HOH HOH . E 5 HOH A 19 419 116 HOH HOH . E 5 HOH A 20 420 97 HOH HOH . E 5 HOH A 21 421 18 HOH HOH . E 5 HOH A 22 422 50 HOH HOH . E 5 HOH A 23 423 44 HOH HOH . E 5 HOH A 24 424 64 HOH HOH . E 5 HOH A 25 425 52 HOH HOH . E 5 HOH A 26 426 48 HOH HOH . E 5 HOH A 27 427 22 HOH HOH . E 5 HOH A 28 428 41 HOH HOH . E 5 HOH A 29 429 45 HOH HOH . E 5 HOH A 30 430 11 HOH HOH . E 5 HOH A 31 431 80 HOH HOH . E 5 HOH A 32 432 43 HOH HOH . E 5 HOH A 33 433 9 HOH HOH . E 5 HOH A 34 434 23 HOH HOH . E 5 HOH A 35 435 19 HOH HOH . E 5 HOH A 36 436 70 HOH HOH . E 5 HOH A 37 437 33 HOH HOH . E 5 HOH A 38 438 85 HOH HOH . E 5 HOH A 39 439 26 HOH HOH . E 5 HOH A 40 440 59 HOH HOH . E 5 HOH A 41 441 31 HOH HOH . E 5 HOH A 42 442 109 HOH HOH . E 5 HOH A 43 443 100 HOH HOH . E 5 HOH A 44 444 14 HOH HOH . E 5 HOH A 45 445 20 HOH HOH . E 5 HOH A 46 446 5 HOH HOH . E 5 HOH A 47 447 10 HOH HOH . E 5 HOH A 48 448 57 HOH HOH . E 5 HOH A 49 449 71 HOH HOH . E 5 HOH A 50 450 37 HOH HOH . E 5 HOH A 51 451 13 HOH HOH . E 5 HOH A 52 452 27 HOH HOH . E 5 HOH A 53 453 15 HOH HOH . E 5 HOH A 54 454 17 HOH HOH . E 5 HOH A 55 455 88 HOH HOH . E 5 HOH A 56 456 8 HOH HOH . E 5 HOH A 57 457 7 HOH HOH . E 5 HOH A 58 458 21 HOH HOH . E 5 HOH A 59 459 79 HOH HOH . E 5 HOH A 60 460 67 HOH HOH . E 5 HOH A 61 461 46 HOH HOH . E 5 HOH A 62 462 12 HOH HOH . E 5 HOH A 63 463 56 HOH HOH . E 5 HOH A 64 464 69 HOH HOH . E 5 HOH A 65 465 38 HOH HOH . E 5 HOH A 66 466 24 HOH HOH . E 5 HOH A 67 467 58 HOH HOH . E 5 HOH A 68 468 76 HOH HOH . E 5 HOH A 69 469 65 HOH HOH . E 5 HOH A 70 470 40 HOH HOH . E 5 HOH A 71 471 6 HOH HOH . E 5 HOH A 72 472 77 HOH HOH . E 5 HOH A 73 473 54 HOH HOH . E 5 HOH A 74 474 49 HOH HOH . E 5 HOH A 75 475 104 HOH HOH . E 5 HOH A 76 476 81 HOH HOH . E 5 HOH A 77 477 2 HOH HOH . E 5 HOH A 78 478 60 HOH HOH . E 5 HOH A 79 479 87 HOH HOH . E 5 HOH A 80 480 39 HOH HOH . E 5 HOH A 81 481 16 HOH HOH . E 5 HOH A 82 482 3 HOH HOH . E 5 HOH A 83 483 47 HOH HOH . E 5 HOH A 84 484 112 HOH HOH . E 5 HOH A 85 485 25 HOH HOH . E 5 HOH A 86 486 73 HOH HOH . E 5 HOH A 87 487 42 HOH HOH . E 5 HOH A 88 488 53 HOH HOH . E 5 HOH A 89 489 113 HOH HOH . E 5 HOH A 90 490 51 HOH HOH . E 5 HOH A 91 491 36 HOH HOH . E 5 HOH A 92 492 99 HOH HOH . E 5 HOH A 93 493 101 HOH HOH . E 5 HOH A 94 494 89 HOH HOH . E 5 HOH A 95 495 98 HOH HOH . E 5 HOH A 96 496 103 HOH HOH . E 5 HOH A 97 497 106 HOH HOH . E 5 HOH A 98 498 117 HOH HOH . E 5 HOH A 99 499 91 HOH HOH . E 5 HOH A 100 500 118 HOH HOH . E 5 HOH A 101 501 74 HOH HOH . E 5 HOH A 102 502 94 HOH HOH . E 5 HOH A 103 503 84 HOH HOH . E 5 HOH A 104 504 30 HOH HOH . E 5 HOH A 105 505 62 HOH HOH . E 5 HOH A 106 506 55 HOH HOH . E 5 HOH A 107 507 114 HOH HOH . E 5 HOH A 108 508 105 HOH HOH . E 5 HOH A 109 509 96 HOH HOH . E 5 HOH A 110 510 93 HOH HOH . E 5 HOH A 111 511 34 HOH HOH . E 5 HOH A 112 512 115 HOH HOH . E 5 HOH A 113 513 68 HOH HOH . E 5 HOH A 114 514 63 HOH HOH . E 5 HOH A 115 515 78 HOH HOH . E 5 HOH A 116 516 95 HOH HOH . E 5 HOH A 117 517 83 HOH HOH . E 5 HOH A 118 518 86 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -26.443 _atom_site.Cartn_y -7.019 _atom_site.Cartn_z 8.905 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 34.47 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #