data_7ZIA
#
_model_server_result.job_id            3wzV1XdpPTuGig6aRJWMSA 
_model_server_result.datetime_utc      '2024-11-26 00:12:18' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zia 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":302}' 
#
_entry.id    7ZIA 
#
_exptl.entry_id    7ZIA 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              579.74 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            2-[2-[[2-methyl-5-[6-(4-methylpiperazin-1-yl)sulfonylpyridin-3-yl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZIA 
_cell.length_a            69.003 
_cell.length_b            69.003 
_cell.length_c            121.166 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZIA 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        91 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? 
metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? 
metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? 
metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? 
metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? 
#
_chem_comp.formula           'C27 H33 N9 O2 S2' 
_chem_comp.formula_weight    579.74 
_chem_comp.id                J29 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              2-[2-[[2-methyl-5-[6-(4-methylpiperazin-1-yl)sulfonylpyridin-3-yl]phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C27 C26 J29 sing 173 n n 
C25 C26 J29 doub 174 n y 
C25 C24 J29 sing 175 n y 
C26 C11 J29 sing 176 n y 
N5 C9 J29 sing 177 n n 
C9 C8 J29 doub 178 n y 
C9 N6 J29 sing 179 n y 
C8 C7 J29 sing 180 n y 
C24 C13 J29 doub 181 n y 
N6 C6 J29 doub 182 n y 
C7 N4 J29 sing 183 n n 
C7 N3 J29 doub 184 n y 
C6 N3 J29 sing 185 n y 
C6 C5 J29 sing 186 n n 
C11 N1 J29 sing 187 n n 
C11 C12 J29 doub 188 n y 
C5 N2 J29 sing 189 n y 
C5 C10 J29 doub 190 n y 
C3 N1 J29 sing 191 n n 
C3 C2 J29 sing 192 n n 
N2 C4 J29 doub 193 n y 
N1 C4 J29 sing 194 n n 
C4 S1 J29 sing 195 n y 
C10 S1 J29 sing 196 n y 
C13 C12 J29 sing 197 n y 
C13 C14 J29 sing 198 n n 
C1 C2 J29 sing 199 n n 
C14 C15 J29 doub 200 n y 
C14 C23 J29 sing 201 n y 
C15 C16 J29 sing 202 n y 
C20 N8 J29 sing 203 n n 
C23 N9 J29 doub 204 n y 
C16 C17 J29 doub 205 n y 
N9 C17 J29 sing 206 n y 
C21 C22 J29 sing 207 n n 
C21 N8 J29 sing 208 n n 
C22 N7 J29 sing 209 n n 
N8 C19 J29 sing 210 n n 
C17 S2 J29 sing 211 n n 
N7 C18 J29 sing 212 n n 
N7 S2 J29 sing 213 n n 
C19 C18 J29 sing 214 n n 
S2 O2 J29 doub 215 n n 
S2 O1 J29 doub 216 n n 
C8 H1 J29 sing 217 n n 
C10 H2 J29 sing 218 n n 
C15 H3 J29 sing 219 n n 
C20 H4 J29 sing 220 n n 
C20 H5 J29 sing 221 n n 
C20 H6 J29 sing 222 n n 
C21 H7 J29 sing 223 n n 
C21 H8 J29 sing 224 n n 
C22 H9 J29 sing 225 n n 
C22 H10 J29 sing 226 n n 
C24 H11 J29 sing 227 n n 
C1 H12 J29 sing 228 n n 
C1 H13 J29 sing 229 n n 
C1 H14 J29 sing 230 n n 
C2 H15 J29 sing 231 n n 
C2 H16 J29 sing 232 n n 
C3 H17 J29 sing 233 n n 
C3 H18 J29 sing 234 n n 
N4 H19 J29 sing 235 n n 
N4 H20 J29 sing 236 n n 
N5 H21 J29 sing 237 n n 
N5 H22 J29 sing 238 n n 
C12 H23 J29 sing 239 n n 
C16 H24 J29 sing 240 n n 
C18 H25 J29 sing 241 n n 
C18 H26 J29 sing 242 n n 
C19 H27 J29 sing 243 n n 
C19 H28 J29 sing 244 n n 
C23 H30 J29 sing 245 n n 
C25 H31 J29 sing 246 n n 
C27 H32 J29 sing 247 n n 
C27 H33 J29 sing 248 n n 
C27 H34 J29 sing 249 n n 
#
_atom_sites.entry_id                     7ZIA 
_atom_sites.fract_transf_matrix[1][1]    0.014492 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014492 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008253 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 UDP A 1 301 301 UDP UDP . 
C 3 J29 A 1 302 302 J29 LIG . 
D 4 NA A 1 303 1 NA NA . 
E 5 HOH A 1 401 76 HOH HOH . 
E 5 HOH A 2 402 57 HOH HOH . 
E 5 HOH A 3 403 18 HOH HOH . 
E 5 HOH A 4 404 52 HOH HOH . 
E 5 HOH A 5 405 94 HOH HOH . 
E 5 HOH A 6 406 73 HOH HOH . 
E 5 HOH A 7 407 58 HOH HOH . 
E 5 HOH A 8 408 31 HOH HOH . 
E 5 HOH A 9 409 98 HOH HOH . 
E 5 HOH A 10 410 43 HOH HOH . 
E 5 HOH A 11 411 15 HOH HOH . 
E 5 HOH A 12 412 74 HOH HOH . 
E 5 HOH A 13 413 79 HOH HOH . 
E 5 HOH A 14 414 77 HOH HOH . 
E 5 HOH A 15 415 55 HOH HOH . 
E 5 HOH A 16 416 78 HOH HOH . 
E 5 HOH A 17 417 53 HOH HOH . 
E 5 HOH A 18 418 81 HOH HOH . 
E 5 HOH A 19 419 26 HOH HOH . 
E 5 HOH A 20 420 9 HOH HOH . 
E 5 HOH A 21 421 13 HOH HOH . 
E 5 HOH A 22 422 24 HOH HOH . 
E 5 HOH A 23 423 6 HOH HOH . 
E 5 HOH A 24 424 64 HOH HOH . 
E 5 HOH A 25 425 41 HOH HOH . 
E 5 HOH A 26 426 46 HOH HOH . 
E 5 HOH A 27 427 82 HOH HOH . 
E 5 HOH A 28 428 17 HOH HOH . 
E 5 HOH A 29 429 30 HOH HOH . 
E 5 HOH A 30 430 69 HOH HOH . 
E 5 HOH A 31 431 44 HOH HOH . 
E 5 HOH A 32 432 1 HOH HOH . 
E 5 HOH A 33 433 65 HOH HOH . 
E 5 HOH A 34 434 59 HOH HOH . 
E 5 HOH A 35 435 49 HOH HOH . 
E 5 HOH A 36 436 12 HOH HOH . 
E 5 HOH A 37 437 25 HOH HOH . 
E 5 HOH A 38 438 45 HOH HOH . 
E 5 HOH A 39 439 27 HOH HOH . 
E 5 HOH A 40 440 38 HOH HOH . 
E 5 HOH A 41 441 61 HOH HOH . 
E 5 HOH A 42 442 62 HOH HOH . 
E 5 HOH A 43 443 67 HOH HOH . 
E 5 HOH A 44 444 72 HOH HOH . 
E 5 HOH A 45 445 2 HOH HOH . 
E 5 HOH A 46 446 21 HOH HOH . 
E 5 HOH A 47 447 56 HOH HOH . 
E 5 HOH A 48 448 4 HOH HOH . 
E 5 HOH A 49 449 87 HOH HOH . 
E 5 HOH A 50 450 23 HOH HOH . 
E 5 HOH A 51 451 10 HOH HOH . 
E 5 HOH A 52 452 22 HOH HOH . 
E 5 HOH A 53 453 89 HOH HOH . 
E 5 HOH A 54 454 20 HOH HOH . 
E 5 HOH A 55 455 7 HOH HOH . 
E 5 HOH A 56 456 95 HOH HOH . 
E 5 HOH A 57 457 88 HOH HOH . 
E 5 HOH A 58 458 66 HOH HOH . 
E 5 HOH A 59 459 60 HOH HOH . 
E 5 HOH A 60 460 48 HOH HOH . 
E 5 HOH A 61 461 70 HOH HOH . 
E 5 HOH A 62 462 14 HOH HOH . 
E 5 HOH A 63 463 19 HOH HOH . 
E 5 HOH A 64 464 5 HOH HOH . 
E 5 HOH A 65 465 11 HOH HOH . 
E 5 HOH A 66 466 39 HOH HOH . 
E 5 HOH A 67 467 34 HOH HOH . 
E 5 HOH A 68 468 33 HOH HOH . 
E 5 HOH A 69 469 36 HOH HOH . 
E 5 HOH A 70 470 16 HOH HOH . 
E 5 HOH A 71 471 29 HOH HOH . 
E 5 HOH A 72 472 8 HOH HOH . 
E 5 HOH A 73 473 3 HOH HOH . 
E 5 HOH A 74 474 50 HOH HOH . 
E 5 HOH A 75 475 40 HOH HOH . 
E 5 HOH A 76 476 93 HOH HOH . 
E 5 HOH A 77 477 75 HOH HOH . 
E 5 HOH A 78 478 37 HOH HOH . 
E 5 HOH A 79 479 85 HOH HOH . 
E 5 HOH A 80 480 51 HOH HOH . 
E 5 HOH A 81 481 68 HOH HOH . 
E 5 HOH A 82 482 28 HOH HOH . 
E 5 HOH A 83 483 71 HOH HOH . 
E 5 HOH A 84 484 32 HOH HOH . 
E 5 HOH A 85 485 90 HOH HOH . 
E 5 HOH A 86 486 54 HOH HOH . 
E 5 HOH A 87 487 96 HOH HOH . 
E 5 HOH A 88 488 86 HOH HOH . 
E 5 HOH A 89 489 47 HOH HOH . 
E 5 HOH A 90 490 91 HOH HOH . 
E 5 HOH A 91 491 80 HOH HOH . 
E 5 HOH A 92 492 97 HOH HOH . 
E 5 HOH A 93 493 92 HOH HOH . 
E 5 HOH A 94 494 83 HOH HOH . 
E 5 HOH A 95 495 35 HOH HOH . 
E 5 HOH A 96 496 84 HOH HOH . 
E 5 HOH A 97 497 42 HOH HOH . 
E 5 HOH A 98 498 63 HOH HOH . 
E 5 HOH A 99 499 99 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 J29 . . . C 3 -12.721 -32.572 10.111 1 40.33 ? N1 J29 302 A 1 
HETATM 2 N N3 J29 . . . C 3 -12.14 -27.597 10.016 1 34.28 ? N3 J29 302 A 1 
HETATM 3 C C4 J29 . . . C 3 -11.749 -31.621 10.203 1 35.26 ? C4 J29 302 A 1 
HETATM 4 C C5 J29 . . . C 3 -10.853 -29.612 10.041 1 30.47 ? C5 J29 302 A 1 
HETATM 5 C C6 J29 . . . C 3 -10.937 -28.171 9.895 1 33.53 ? C6 J29 302 A 1 
HETATM 6 C C7 J29 . . . C 3 -12.217 -26.281 9.879 1 34.27 ? C7 J29 302 A 1 
HETATM 7 C C8 J29 . . . C 3 -11.089 -25.505 9.602 1 32.02 ? C8 J29 302 A 1 
HETATM 8 C C10 J29 . . . C 3 -9.705 -30.332 10.214 1 35.86 ? C10 J29 302 A 1 
HETATM 9 C C13 J29 . . . C 3 -11.529 -35.983 10.931 1 49.93 ? C13 J29 302 A 1 
HETATM 10 C C15 J29 . . . C 3 -11.948 -37.909 12.456 1 66.77 ? C15 J29 302 A 1 
HETATM 11 C C17 J29 . . . C 3 -10.585 -38.264 14.347 1 74.38 ? C17 J29 302 A 1 
HETATM 12 C C20 J29 . . . C 3 -6.208 -40.637 12.905 1 92.8 ? C20 J29 302 A 1 
HETATM 13 C C21 J29 . . . C 3 -7.785 -42.004 14.153 1 89.1 ? C21 J29 302 A 1 
HETATM 14 C C22 J29 . . . C 3 -8.918 -40.997 14.159 1 87.12 ? C22 J29 302 A 1 
HETATM 15 C C24 J29 . . . C 3 -11.504 -36.538 9.649 1 41.16 ? C24 J29 302 A 1 
HETATM 16 C C26 J29 . . . C 3 -12.306 -34.481 8.667 1 36.25 ? C26 J29 302 A 1 
HETATM 17 C C1 J29 . . . C 3 -16.293 -32.029 11.397 1 50.6 ? C1 J29 302 A 1 
HETATM 18 C C2 J29 . . . C 3 -14.779 -32.192 11.463 1 45.36 ? C2 J29 302 A 1 
HETATM 19 C C3 J29 . . . C 3 -14.168 -32.255 10.087 1 38.52 ? C3 J29 302 A 1 
HETATM 20 N N2 J29 . . . C 3 -12.023 -30.359 10.09 1 35.27 ? N2 J29 302 A 1 
HETATM 21 N N4 J29 . . . C 3 -13.42 -25.718 9.957 1 35.77 ? N4 J29 302 A 1 
HETATM 22 C C9 J29 . . . C 3 -9.88 -26.166 9.537 1 31.21 ? C9 J29 302 A 1 
HETATM 23 N N5 J29 . . . C 3 -8.749 -25.496 9.289 1 32.49 ? N5 J29 302 A 1 
HETATM 24 N N6 J29 . . . C 3 -9.818 -27.497 9.656 1 30.48 ? N6 J29 302 A 1 
HETATM 25 S S1 J29 . . . C 3 -10.066 -32.01 10.334 1 35.8 ? S1 J29 302 A 1 
HETATM 26 C C11 J29 . . . C 3 -12.334 -33.934 9.946 1 36.37 ? C11 J29 302 A 1 
HETATM 27 C C12 J29 . . . C 3 -11.941 -34.663 11.061 1 43.02 ? C12 J29 302 A 1 
HETATM 28 C C14 J29 . . . C 3 -11.194 -36.785 12.132 1 55.68 ? C14 J29 302 A 1 
HETATM 29 C C16 J29 . . . C 3 -11.642 -38.671 13.567 1 63.18 ? C16 J29 302 A 1 
HETATM 30 S S2 J29 . . . C 3 -10.116 -39.242 15.763 1 87.66 ? S2 J29 302 A 1 
HETATM 31 O O1 J29 . . . C 3 -9.702 -38.375 16.827 1 72.02 ? O1 J29 302 A 1 
HETATM 32 O O2 J29 . . . C 3 -11.17 -40.19 15.939 1 73.11 ? O2 J29 302 A 1 
HETATM 33 N N7 J29 . . . C 3 -8.788 -40.109 15.33 1 88.79 ? N7 J29 302 A 1 
HETATM 34 C C18 J29 . . . C 3 -7.473 -39.441 15.38 1 90.9 ? C18 J29 302 A 1 
HETATM 35 C C19 J29 . . . C 3 -6.364 -40.478 15.335 1 93.3 ? C19 J29 302 A 1 
HETATM 36 N N8 J29 . . . C 3 -6.477 -41.347 14.161 1 96.99 ? N8 J29 302 A 1 
HETATM 37 N N9 J29 . . . C 3 -9.844 -37.185 14.082 1 67.94 ? N9 J29 302 A 1 
HETATM 38 C C23 J29 . . . C 3 -10.148 -36.461 12.996 1 64.12 ? C23 J29 302 A 1 
HETATM 39 C C25 J29 . . . C 3 -11.9 -35.81 8.54 1 43.81 ? C25 J29 302 A 1 
HETATM 40 C C27 J29 . . . C 3 -12.667 -33.665 7.488 1 42.76 ? C27 J29 302 A 1 
#
_model_server_stats.io_time_ms              9 
_model_server_stats.parse_time_ms           18 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           252 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           40 
#