data_7ZIA # _model_server_result.job_id J_YJgvfeIOG2Oda2dBaoQQ _model_server_result.datetime_utc '2024-11-22 16:19:29' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zia # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":303}' # _entry.id 7ZIA # _exptl.entry_id 7ZIA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZIA _cell.length_a 69.003 _cell.length_b 69.003 _cell.length_c 121.166 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZIA _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.361 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.338 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.311 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 444 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 D NA NA . A NA 303 1_555 E O HOH . A HOH 490 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.305 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZIA _atom_sites.fract_transf_matrix[1][1] 0.014492 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014492 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008253 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 301 UDP UDP . C 3 J29 A 1 302 302 J29 LIG . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 76 HOH HOH . E 5 HOH A 2 402 57 HOH HOH . E 5 HOH A 3 403 18 HOH HOH . E 5 HOH A 4 404 52 HOH HOH . E 5 HOH A 5 405 94 HOH HOH . E 5 HOH A 6 406 73 HOH HOH . E 5 HOH A 7 407 58 HOH HOH . E 5 HOH A 8 408 31 HOH HOH . E 5 HOH A 9 409 98 HOH HOH . E 5 HOH A 10 410 43 HOH HOH . E 5 HOH A 11 411 15 HOH HOH . E 5 HOH A 12 412 74 HOH HOH . E 5 HOH A 13 413 79 HOH HOH . E 5 HOH A 14 414 77 HOH HOH . E 5 HOH A 15 415 55 HOH HOH . E 5 HOH A 16 416 78 HOH HOH . E 5 HOH A 17 417 53 HOH HOH . E 5 HOH A 18 418 81 HOH HOH . E 5 HOH A 19 419 26 HOH HOH . E 5 HOH A 20 420 9 HOH HOH . E 5 HOH A 21 421 13 HOH HOH . E 5 HOH A 22 422 24 HOH HOH . E 5 HOH A 23 423 6 HOH HOH . E 5 HOH A 24 424 64 HOH HOH . E 5 HOH A 25 425 41 HOH HOH . E 5 HOH A 26 426 46 HOH HOH . E 5 HOH A 27 427 82 HOH HOH . E 5 HOH A 28 428 17 HOH HOH . E 5 HOH A 29 429 30 HOH HOH . E 5 HOH A 30 430 69 HOH HOH . E 5 HOH A 31 431 44 HOH HOH . E 5 HOH A 32 432 1 HOH HOH . E 5 HOH A 33 433 65 HOH HOH . E 5 HOH A 34 434 59 HOH HOH . E 5 HOH A 35 435 49 HOH HOH . E 5 HOH A 36 436 12 HOH HOH . E 5 HOH A 37 437 25 HOH HOH . E 5 HOH A 38 438 45 HOH HOH . E 5 HOH A 39 439 27 HOH HOH . E 5 HOH A 40 440 38 HOH HOH . E 5 HOH A 41 441 61 HOH HOH . E 5 HOH A 42 442 62 HOH HOH . E 5 HOH A 43 443 67 HOH HOH . E 5 HOH A 44 444 72 HOH HOH . E 5 HOH A 45 445 2 HOH HOH . E 5 HOH A 46 446 21 HOH HOH . E 5 HOH A 47 447 56 HOH HOH . E 5 HOH A 48 448 4 HOH HOH . E 5 HOH A 49 449 87 HOH HOH . E 5 HOH A 50 450 23 HOH HOH . E 5 HOH A 51 451 10 HOH HOH . E 5 HOH A 52 452 22 HOH HOH . E 5 HOH A 53 453 89 HOH HOH . E 5 HOH A 54 454 20 HOH HOH . E 5 HOH A 55 455 7 HOH HOH . E 5 HOH A 56 456 95 HOH HOH . E 5 HOH A 57 457 88 HOH HOH . E 5 HOH A 58 458 66 HOH HOH . E 5 HOH A 59 459 60 HOH HOH . E 5 HOH A 60 460 48 HOH HOH . E 5 HOH A 61 461 70 HOH HOH . E 5 HOH A 62 462 14 HOH HOH . E 5 HOH A 63 463 19 HOH HOH . E 5 HOH A 64 464 5 HOH HOH . E 5 HOH A 65 465 11 HOH HOH . E 5 HOH A 66 466 39 HOH HOH . E 5 HOH A 67 467 34 HOH HOH . E 5 HOH A 68 468 33 HOH HOH . E 5 HOH A 69 469 36 HOH HOH . E 5 HOH A 70 470 16 HOH HOH . E 5 HOH A 71 471 29 HOH HOH . E 5 HOH A 72 472 8 HOH HOH . E 5 HOH A 73 473 3 HOH HOH . E 5 HOH A 74 474 50 HOH HOH . E 5 HOH A 75 475 40 HOH HOH . E 5 HOH A 76 476 93 HOH HOH . E 5 HOH A 77 477 75 HOH HOH . E 5 HOH A 78 478 37 HOH HOH . E 5 HOH A 79 479 85 HOH HOH . E 5 HOH A 80 480 51 HOH HOH . E 5 HOH A 81 481 68 HOH HOH . E 5 HOH A 82 482 28 HOH HOH . E 5 HOH A 83 483 71 HOH HOH . E 5 HOH A 84 484 32 HOH HOH . E 5 HOH A 85 485 90 HOH HOH . E 5 HOH A 86 486 54 HOH HOH . E 5 HOH A 87 487 96 HOH HOH . E 5 HOH A 88 488 86 HOH HOH . E 5 HOH A 89 489 47 HOH HOH . E 5 HOH A 90 490 91 HOH HOH . E 5 HOH A 91 491 80 HOH HOH . E 5 HOH A 92 492 97 HOH HOH . E 5 HOH A 93 493 92 HOH HOH . E 5 HOH A 94 494 83 HOH HOH . E 5 HOH A 95 495 35 HOH HOH . E 5 HOH A 96 496 84 HOH HOH . E 5 HOH A 97 497 42 HOH HOH . E 5 HOH A 98 498 63 HOH HOH . E 5 HOH A 99 499 99 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id D _atom_site.label_entity_id 4 _atom_site.Cartn_x -26.374 _atom_site.Cartn_y -6.96 _atom_site.Cartn_z 8.953 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 40.07 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 303 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 252 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 1 #