data_7ZIB # _model_server_result.job_id 01h6VTV35ElRza6fZsjV1A _model_server_result.datetime_utc '2024-10-18 12:33:00' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zib # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":302}' # _entry.id 7ZIB # _exptl.entry_id 7ZIB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 608.778 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[2-[[5-[3-methoxy-4-(4-methylpiperazin-1-yl)sulfonyl-phenyl]-2-methyl-phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZIB _cell.length_a 68.506 _cell.length_b 68.506 _cell.length_c 120.334 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZIB _symmetry.cell_setting ? _symmetry.Int_Tables_number 91 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 41 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 5_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A O LYS 62 A LYS 42 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.264 ? metalc ? metalc2 A O SER 65 A SER 45 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.278 ? metalc ? metalc3 A O TRP 68 A TRP 48 1_555 D NA NA . A NA 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc4 D NA NA . A NA 303 1_555 E O HOH . A HOH 465 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.363 ? # _chem_comp.formula 'C29 H36 N8 O3 S2' _chem_comp.formula_weight 608.778 _chem_comp.id J7I _chem_comp.mon_nstd_flag . _chem_comp.name 2-[2-[[5-[3-methoxy-4-(4-methylpiperazin-1-yl)sulfonyl-phenyl]-2-methyl-phenyl]-propyl-amino]-1,3-thiazol-4-yl]pyrimidine-4,6-diamine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C28 J7I sing 173 n n C27 C28 J7I doub 174 n y C27 C26 J7I sing 175 n y C28 C11 J7I sing 176 n y N4 C7 J7I sing 177 n n C7 C8 J7I doub 178 n y C7 N3 J7I sing 179 n y C8 C9 J7I sing 180 n y N3 C6 J7I doub 181 n y C26 C13 J7I doub 182 n y C9 N5 J7I sing 183 n n C9 N6 J7I doub 184 n y C6 N6 J7I sing 185 n y C6 C5 J7I sing 186 n n C11 N1 J7I sing 187 n n C11 C12 J7I doub 188 n y N2 C5 J7I sing 189 n y N2 C4 J7I doub 190 n y C5 C10 J7I doub 191 n y N1 C4 J7I sing 192 n n N1 C3 J7I sing 193 n n C4 S1 J7I sing 194 n y C3 C2 J7I sing 195 n n C10 S1 J7I sing 196 n y C13 C12 J7I sing 197 n y C13 C14 J7I sing 198 n n C1 C2 J7I sing 199 n n C14 C25 J7I doub 200 n y C14 C15 J7I sing 201 n y C25 C23 J7I sing 202 n y C24 O3 J7I sing 203 n n C15 C16 J7I doub 204 n y C23 O3 J7I sing 205 n n C23 C17 J7I doub 206 n y C20 N8 J7I sing 207 n n C19 N8 J7I sing 208 n n C19 C18 J7I sing 209 n n C16 C17 J7I sing 210 n y C17 S2 J7I sing 211 n n N8 C21 J7I sing 212 n n C21 C22 J7I sing 213 n n C18 N7 J7I sing 214 n n N7 S2 J7I sing 215 n n N7 C22 J7I sing 216 n n S2 O2 J7I doub 217 n n S2 O1 J7I doub 218 n n C8 H1 J7I sing 219 n n C10 H2 J7I sing 220 n n C15 H3 J7I sing 221 n n C20 H4 J7I sing 222 n n C20 H5 J7I sing 223 n n C20 H6 J7I sing 224 n n C21 H7 J7I sing 225 n n C21 H8 J7I sing 226 n n C22 H9 J7I sing 227 n n C22 H10 J7I sing 228 n n C24 H11 J7I sing 229 n n C24 H12 J7I sing 230 n n C24 H13 J7I sing 231 n n C26 H14 J7I sing 232 n n C1 H15 J7I sing 233 n n C1 H16 J7I sing 234 n n C1 H17 J7I sing 235 n n C2 H18 J7I sing 236 n n C2 H19 J7I sing 237 n n C3 H20 J7I sing 238 n n C3 H21 J7I sing 239 n n N4 H22 J7I sing 240 n n N4 H23 J7I sing 241 n n N5 H24 J7I sing 242 n n N5 H25 J7I sing 243 n n C12 H26 J7I sing 244 n n C16 H27 J7I sing 245 n n C18 H28 J7I sing 246 n n C18 H29 J7I sing 247 n n C19 H30 J7I sing 248 n n C19 H31 J7I sing 249 n n C25 H33 J7I sing 250 n n C27 H34 J7I sing 251 n n C29 H35 J7I sing 252 n n C29 H36 J7I sing 253 n n C29 H37 J7I sing 254 n n # _atom_sites.entry_id 7ZIB _atom_sites.fract_transf_matrix[1][1] 0.014597 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014597 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00831 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UDP A 1 301 301 UDP UDP . C 3 J7I A 1 302 302 J7I LIG . D 4 NA A 1 303 1 NA NA . E 5 HOH A 1 401 52 HOH HOH . E 5 HOH A 2 402 40 HOH HOH . E 5 HOH A 3 403 22 HOH HOH . E 5 HOH A 4 404 49 HOH HOH . E 5 HOH A 5 405 24 HOH HOH . E 5 HOH A 6 406 58 HOH HOH . E 5 HOH A 7 407 20 HOH HOH . E 5 HOH A 8 408 23 HOH HOH . E 5 HOH A 9 409 30 HOH HOH . E 5 HOH A 10 410 50 HOH HOH . E 5 HOH A 11 411 48 HOH HOH . E 5 HOH A 12 412 65 HOH HOH . E 5 HOH A 13 413 39 HOH HOH . E 5 HOH A 14 414 57 HOH HOH . E 5 HOH A 15 415 64 HOH HOH . E 5 HOH A 16 416 42 HOH HOH . E 5 HOH A 17 417 25 HOH HOH . E 5 HOH A 18 418 33 HOH HOH . E 5 HOH A 19 419 37 HOH HOH . E 5 HOH A 20 420 1 HOH HOH . E 5 HOH A 21 421 3 HOH HOH . E 5 HOH A 22 422 36 HOH HOH . E 5 HOH A 23 423 27 HOH HOH . E 5 HOH A 24 424 10 HOH HOH . E 5 HOH A 25 425 46 HOH HOH . E 5 HOH A 26 426 41 HOH HOH . E 5 HOH A 27 427 11 HOH HOH . E 5 HOH A 28 428 5 HOH HOH . E 5 HOH A 29 429 26 HOH HOH . E 5 HOH A 30 430 4 HOH HOH . E 5 HOH A 31 431 62 HOH HOH . E 5 HOH A 32 432 9 HOH HOH . E 5 HOH A 33 433 8 HOH HOH . E 5 HOH A 34 434 13 HOH HOH . E 5 HOH A 35 435 6 HOH HOH . E 5 HOH A 36 436 63 HOH HOH . E 5 HOH A 37 437 34 HOH HOH . E 5 HOH A 38 438 15 HOH HOH . E 5 HOH A 39 439 28 HOH HOH . E 5 HOH A 40 440 44 HOH HOH . E 5 HOH A 41 441 51 HOH HOH . E 5 HOH A 42 442 55 HOH HOH . E 5 HOH A 43 443 19 HOH HOH . E 5 HOH A 44 444 68 HOH HOH . E 5 HOH A 45 445 70 HOH HOH . E 5 HOH A 46 446 47 HOH HOH . E 5 HOH A 47 447 16 HOH HOH . E 5 HOH A 48 448 59 HOH HOH . E 5 HOH A 49 449 38 HOH HOH . E 5 HOH A 50 450 2 HOH HOH . E 5 HOH A 51 451 12 HOH HOH . E 5 HOH A 52 452 56 HOH HOH . E 5 HOH A 53 453 53 HOH HOH . E 5 HOH A 54 454 17 HOH HOH . E 5 HOH A 55 455 29 HOH HOH . E 5 HOH A 56 456 69 HOH HOH . E 5 HOH A 57 457 60 HOH HOH . E 5 HOH A 58 458 61 HOH HOH . E 5 HOH A 59 459 66 HOH HOH . E 5 HOH A 60 460 7 HOH HOH . E 5 HOH A 61 461 54 HOH HOH . E 5 HOH A 62 462 31 HOH HOH . E 5 HOH A 63 463 14 HOH HOH . E 5 HOH A 64 464 67 HOH HOH . E 5 HOH A 65 465 45 HOH HOH . E 5 HOH A 66 466 43 HOH HOH . E 5 HOH A 67 467 21 HOH HOH . E 5 HOH A 68 468 18 HOH HOH . E 5 HOH A 69 469 35 HOH HOH . E 5 HOH A 70 470 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 J7I . . . C 3 -12.457 -32.505 10.122 1 41.17 ? N1 J7I 302 A 1 HETATM 2 N N3 J7I . . . C 3 -9.668 -27.396 9.705 1 31.01 ? N3 J7I 302 A 1 HETATM 3 C C4 J7I . . . C 3 -11.547 -31.548 10.167 1 36.88 ? C4 J7I 302 A 1 HETATM 4 C C5 J7I . . . C 3 -10.685 -29.521 10.14 1 32.03 ? C5 J7I 302 A 1 HETATM 5 C C6 J7I . . . C 3 -10.769 -28.089 10 1 35.85 ? C6 J7I 302 A 1 HETATM 6 C C7 J7I . . . C 3 -9.781 -26.072 9.55 1 33.59 ? C7 J7I 302 A 1 HETATM 7 C C8 J7I . . . C 3 -11 -25.438 9.691 1 32.41 ? C8 J7I 302 A 1 HETATM 8 C C10 J7I . . . C 3 -9.536 -30.227 10.327 1 34.85 ? C10 J7I 302 A 1 HETATM 9 C C13 J7I . . . C 3 -11.094 -35.834 10.935 1 42.41 ? C13 J7I 302 A 1 HETATM 10 C C15 J7I . . . C 3 -11.441 -36.63 13.258 1 54.44 ? C15 J7I 302 A 1 HETATM 11 C C17 J7I . . . C 3 -9.776 -37.863 14.437 1 65.42 ? C17 J7I 302 A 1 HETATM 12 C C20 J7I . . . C 3 -6.518 -43.424 13.897 1 110.48 ? C20 J7I 302 A 1 HETATM 13 C C21 J7I . . . C 3 -6.495 -41.334 15.11 1 100.9 ? C21 J7I 302 A 1 HETATM 14 C C22 J7I . . . C 3 -7.256 -40.432 16.059 1 95.45 ? C22 J7I 302 A 1 HETATM 15 C C24 J7I . . . C 3 -6.699 -38.154 12.426 1 64.7 ? C24 J7I 302 A 1 HETATM 16 C C26 J7I . . . C 3 -11.113 -36.424 9.681 1 38.65 ? C26 J7I 302 A 1 HETATM 17 C C28 J7I . . . C 3 -12.063 -34.436 8.711 1 37.87 ? C28 J7I 302 A 1 HETATM 18 C C1 J7I . . . C 3 -15.946 -32.012 11.559 1 51.4 ? C1 J7I 302 A 1 HETATM 19 C C2 J7I . . . C 3 -14.444 -32.248 11.587 1 48.31 ? C2 J7I 302 A 1 HETATM 20 C C3 J7I . . . C 3 -13.907 -32.254 10.178 1 44.73 ? C3 J7I 302 A 1 HETATM 21 N N2 J7I . . . C 3 -11.843 -30.286 10.028 1 36.26 ? N2 J7I 302 A 1 HETATM 22 N N4 J7I . . . C 3 -8.668 -25.375 9.315 1 31.25 ? N4 J7I 302 A 1 HETATM 23 C C9 J7I . . . C 3 -12.089 -26.24 9.948 1 34.07 ? C9 J7I 302 A 1 HETATM 24 N N5 J7I . . . C 3 -13.315 -25.733 10.069 1 37.28 ? N5 J7I 302 A 1 HETATM 25 N N6 J7I . . . C 3 -11.97 -27.549 10.128 1 30.35 ? N6 J7I 302 A 1 HETATM 26 S S1 J7I . . . C 3 -9.857 -31.921 10.314 1 35.14 ? S1 J7I 302 A 1 HETATM 27 C C11 J7I . . . C 3 -12.033 -33.844 9.969 1 39.15 ? C11 J7I 302 A 1 HETATM 28 C C12 J7I . . . C 3 -11.558 -34.531 11.074 1 38.43 ? C12 J7I 302 A 1 HETATM 29 C C14 J7I . . . C 3 -10.631 -36.562 12.136 1 49.71 ? C14 J7I 302 A 1 HETATM 30 C C16 J7I . . . C 3 -11.024 -37.277 14.4 1 56.95 ? C16 J7I 302 A 1 HETATM 31 S S2 J7I . . . C 3 -9.305 -38.708 15.912 1 72.37 ? S2 J7I 302 A 1 HETATM 32 O O1 J7I . . . C 3 -10.519 -39.117 16.539 1 78.28 ? O1 J7I 302 A 1 HETATM 33 O O2 J7I . . . C 3 -8.324 -37.923 16.591 1 65.9 ? O2 J7I 302 A 1 HETATM 34 N N7 J7I . . . C 3 -8.543 -40.078 15.432 1 96.64 ? N7 J7I 302 A 1 HETATM 35 C C18 J7I . . . C 3 -9.368 -41.262 15.128 1 99.69 ? C18 J7I 302 A 1 HETATM 36 C C19 J7I . . . C 3 -8.571 -42.176 14.213 1 106.41 ? C19 J7I 302 A 1 HETATM 37 N N8 J7I . . . C 3 -7.27 -42.535 14.79 1 109.71 ? N8 J7I 302 A 1 HETATM 38 C C23 J7I . . . C 3 -8.936 -37.823 13.303 1 67.86 ? C23 J7I 302 A 1 HETATM 39 O O3 J7I . . . C 3 -7.72 -38.447 13.385 1 70.53 ? O3 J7I 302 A 1 HETATM 40 C C25 J7I . . . C 3 -9.374 -37.161 12.171 1 63.79 ? C25 J7I 302 A 1 HETATM 41 C C27 J7I . . . C 3 -11.61 -35.747 8.587 1 42.47 ? C27 J7I 302 A 1 HETATM 42 C C29 J7I . . . C 3 -12.526 -33.693 7.52 1 36.92 ? C29 J7I 302 A 1 # _model_server_stats.io_time_ms 59 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 42 #