data_7ZIX # _model_server_result.job_id aaB5HlFcNPVeeR5LolydcQ _model_server_result.datetime_utc '2025-07-02 07:07:46' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zix # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7ZIX # _exptl.entry_id 7ZIX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 667.792 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[9-[2-carboxy-5-[2-[2-[4-(methylsulfonylamino)butoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 92.571 _cell.angle_gamma 90 _cell.entry_id 7ZIX _cell.length_a 44.227 _cell.length_b 78.399 _cell.length_c 81.623 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZIX _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,E 1 1 B,D,F 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 D N N # _chem_comp.formula 'C34 H43 N4 O8 S 1' _chem_comp.formula_weight 667.792 _chem_comp.id IYU _chem_comp.mon_nstd_flag . _chem_comp.name '[9-[2-carboxy-5-[2-[2-[4-(methylsulfonylamino)butoxy]ethoxy]ethylcarbamoyl]phenyl]-6-(dimethylamino)xanthen-3-ylidene]-dimethyl-azanium' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C4 IYU sing 173 n n O2 C5 IYU sing 174 n n C4 C3 IYU sing 175 n n O1 C3 IYU sing 176 n n O1 C2 IYU sing 177 n n C5 C6 IYU sing 178 n n C1 C2 IYU sing 179 n n C1 N IYU sing 180 n n N C IYU sing 181 n n C6 C7 IYU sing 182 n n C9 S IYU sing 183 n n C8 C7 IYU sing 184 n n C8 N1 IYU sing 185 n n C11 C12 IYU doub 186 n y C11 C10 IYU sing 187 n y O4 S IYU doub 188 n n C12 C13 IYU sing 189 n y C C10 IYU sing 190 n n C O IYU doub 191 n n C10 C33 IYU doub 192 n y S N1 IYU sing 193 n n S O3 IYU doub 194 n n O6 C14 IYU doub 195 n n C13 C14 IYU sing 196 n n C13 C15 IYU doub 197 n y C14 O5 IYU sing 198 n n C33 C15 IYU sing 199 n y C31 N3 IYU sing 200 n n C26 C27 IYU doub 201 n y C26 C25 IYU sing 202 n y C27 C30 IYU sing 203 n y C15 C16 IYU sing 204 n n C25 C16 IYU sing 205 n n C25 C28 IYU doub 206 n y C30 N3 IYU sing 207 n n C30 C29 IYU doub 208 n y N3 C32 IYU sing 209 n n C16 C17 IYU doub 210 n n C28 C29 IYU sing 211 n y C28 O7 IYU sing 212 n n C17 C18 IYU sing 213 n n C17 C24 IYU sing 214 n n C18 C19 IYU doub 215 n n O7 C24 IYU sing 216 n n C24 C23 IYU doub 217 n n C19 C20 IYU sing 218 n n C23 C20 IYU sing 219 n n C20 N2 IYU doub 220 n n N2 C21 IYU sing 221 n n N2 C22 IYU sing 222 n n N1 H1 IYU sing 223 n n C7 H2 IYU sing 224 n n C7 H3 IYU sing 225 n n C8 H4 IYU sing 226 n n C8 H5 IYU sing 227 n n C9 H6 IYU sing 228 n n C9 H7 IYU sing 229 n n C9 H8 IYU sing 230 n n C1 H9 IYU sing 231 n n C1 H10 IYU sing 232 n n O5 H11 IYU sing 233 n n C5 H12 IYU sing 234 n n C5 H13 IYU sing 235 n n C6 H14 IYU sing 236 n n C6 H15 IYU sing 237 n n C4 H16 IYU sing 238 n n C4 H17 IYU sing 239 n n C3 H18 IYU sing 240 n n C3 H19 IYU sing 241 n n C2 H20 IYU sing 242 n n C2 H21 IYU sing 243 n n N H22 IYU sing 244 n n C11 H23 IYU sing 245 n n C12 H24 IYU sing 246 n n C18 H25 IYU sing 247 n n C19 H26 IYU sing 248 n n C21 H27 IYU sing 249 n n C21 H28 IYU sing 250 n n C21 H29 IYU sing 251 n n C22 H30 IYU sing 252 n n C22 H31 IYU sing 253 n n C22 H32 IYU sing 254 n n C23 H33 IYU sing 255 n n C26 H34 IYU sing 256 n n C27 H35 IYU sing 257 n n C29 H36 IYU sing 258 n n C31 H37 IYU sing 259 n n C31 H38 IYU sing 260 n n C31 H39 IYU sing 261 n n C32 H40 IYU sing 262 n n C32 H41 IYU sing 263 n n C32 H42 IYU sing 264 n n C33 H43 IYU sing 265 n n # _atom_sites.entry_id 7ZIX _atom_sites.fract_transf_matrix[1][1] 0.022611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001015 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012755 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012264 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 IYU A 1 301 301 IYU XXX . D 2 IYU B 1 301 301 IYU XXX . E 3 HOH A 1 401 26 HOH HOH . E 3 HOH A 2 402 24 HOH HOH . E 3 HOH A 3 403 160 HOH HOH . E 3 HOH A 4 404 18 HOH HOH . E 3 HOH A 5 405 151 HOH HOH . E 3 HOH A 6 406 71 HOH HOH . E 3 HOH A 7 407 56 HOH HOH . E 3 HOH A 8 408 21 HOH HOH . E 3 HOH A 9 409 128 HOH HOH . E 3 HOH A 10 410 49 HOH HOH . E 3 HOH A 11 411 13 HOH HOH . E 3 HOH A 12 412 62 HOH HOH . E 3 HOH A 13 413 29 HOH HOH . E 3 HOH A 14 414 48 HOH HOH . E 3 HOH A 15 415 60 HOH HOH . E 3 HOH A 16 416 16 HOH HOH . E 3 HOH A 17 417 53 HOH HOH . E 3 HOH A 18 418 115 HOH HOH . E 3 HOH A 19 419 25 HOH HOH . E 3 HOH A 20 420 27 HOH HOH . E 3 HOH A 21 421 102 HOH HOH . E 3 HOH A 22 422 76 HOH HOH . E 3 HOH A 23 423 136 HOH HOH . E 3 HOH A 24 424 82 HOH HOH . E 3 HOH A 25 425 93 HOH HOH . E 3 HOH A 26 426 142 HOH HOH . E 3 HOH A 27 427 47 HOH HOH . E 3 HOH A 28 428 10 HOH HOH . E 3 HOH A 29 429 70 HOH HOH . E 3 HOH A 30 430 51 HOH HOH . E 3 HOH A 31 431 89 HOH HOH . E 3 HOH A 32 432 5 HOH HOH . E 3 HOH A 33 433 42 HOH HOH . E 3 HOH A 34 434 34 HOH HOH . E 3 HOH A 35 435 94 HOH HOH . E 3 HOH A 36 436 32 HOH HOH . E 3 HOH A 37 437 156 HOH HOH . E 3 HOH A 38 438 43 HOH HOH . E 3 HOH A 39 439 158 HOH HOH . E 3 HOH A 40 440 92 HOH HOH . E 3 HOH A 41 441 31 HOH HOH . E 3 HOH A 42 442 17 HOH HOH . E 3 HOH A 43 443 61 HOH HOH . E 3 HOH A 44 444 134 HOH HOH . E 3 HOH A 45 445 14 HOH HOH . E 3 HOH A 46 446 58 HOH HOH . E 3 HOH A 47 447 1 HOH HOH . E 3 HOH A 48 448 112 HOH HOH . E 3 HOH A 49 449 4 HOH HOH . E 3 HOH A 50 450 57 HOH HOH . E 3 HOH A 51 451 22 HOH HOH . E 3 HOH A 52 452 55 HOH HOH . E 3 HOH A 53 453 67 HOH HOH . E 3 HOH A 54 454 83 HOH HOH . E 3 HOH A 55 455 155 HOH HOH . E 3 HOH A 56 456 99 HOH HOH . E 3 HOH A 57 457 149 HOH HOH . E 3 HOH A 58 458 130 HOH HOH . E 3 HOH A 59 459 69 HOH HOH . E 3 HOH A 60 460 120 HOH HOH . E 3 HOH A 61 461 105 HOH HOH . E 3 HOH A 62 462 122 HOH HOH . E 3 HOH A 63 463 23 HOH HOH . E 3 HOH A 64 464 118 HOH HOH . E 3 HOH A 65 465 84 HOH HOH . E 3 HOH A 66 466 85 HOH HOH . E 3 HOH A 67 467 91 HOH HOH . E 3 HOH A 68 468 153 HOH HOH . E 3 HOH A 69 469 52 HOH HOH . E 3 HOH A 70 470 78 HOH HOH . E 3 HOH A 71 471 35 HOH HOH . E 3 HOH A 72 472 45 HOH HOH . E 3 HOH A 73 473 88 HOH HOH . E 3 HOH A 74 474 143 HOH HOH . E 3 HOH A 75 475 2 HOH HOH . E 3 HOH A 76 476 106 HOH HOH . E 3 HOH A 77 477 137 HOH HOH . E 3 HOH A 78 478 138 HOH HOH . E 3 HOH A 79 479 114 HOH HOH . E 3 HOH A 80 480 66 HOH HOH . E 3 HOH A 81 481 64 HOH HOH . E 3 HOH A 82 482 79 HOH HOH . F 3 HOH B 1 401 132 HOH HOH . F 3 HOH B 2 402 20 HOH HOH . F 3 HOH B 3 403 19 HOH HOH . F 3 HOH B 4 404 147 HOH HOH . F 3 HOH B 5 405 39 HOH HOH . F 3 HOH B 6 406 12 HOH HOH . F 3 HOH B 7 407 73 HOH HOH . F 3 HOH B 8 408 127 HOH HOH . F 3 HOH B 9 409 15 HOH HOH . F 3 HOH B 10 410 148 HOH HOH . F 3 HOH B 11 411 154 HOH HOH . F 3 HOH B 12 412 41 HOH HOH . F 3 HOH B 13 413 135 HOH HOH . F 3 HOH B 14 414 28 HOH HOH . F 3 HOH B 15 415 98 HOH HOH . F 3 HOH B 16 416 36 HOH HOH . F 3 HOH B 17 417 161 HOH HOH . F 3 HOH B 18 418 33 HOH HOH . F 3 HOH B 19 419 38 HOH HOH . F 3 HOH B 20 420 11 HOH HOH . F 3 HOH B 21 421 65 HOH HOH . F 3 HOH B 22 422 9 HOH HOH . F 3 HOH B 23 423 80 HOH HOH . F 3 HOH B 24 424 50 HOH HOH . F 3 HOH B 25 425 159 HOH HOH . F 3 HOH B 26 426 59 HOH HOH . F 3 HOH B 27 427 119 HOH HOH . F 3 HOH B 28 428 7 HOH HOH . F 3 HOH B 29 429 68 HOH HOH . F 3 HOH B 30 430 104 HOH HOH . F 3 HOH B 31 431 40 HOH HOH . F 3 HOH B 32 432 75 HOH HOH . F 3 HOH B 33 433 44 HOH HOH . F 3 HOH B 34 434 125 HOH HOH . F 3 HOH B 35 435 37 HOH HOH . F 3 HOH B 36 436 54 HOH HOH . F 3 HOH B 37 437 123 HOH HOH . F 3 HOH B 38 438 8 HOH HOH . F 3 HOH B 39 439 139 HOH HOH . F 3 HOH B 40 440 140 HOH HOH . F 3 HOH B 41 441 30 HOH HOH . F 3 HOH B 42 442 81 HOH HOH . F 3 HOH B 43 443 6 HOH HOH . F 3 HOH B 44 444 97 HOH HOH . F 3 HOH B 45 445 129 HOH HOH . F 3 HOH B 46 446 101 HOH HOH . F 3 HOH B 47 447 63 HOH HOH . F 3 HOH B 48 448 100 HOH HOH . F 3 HOH B 49 449 95 HOH HOH . F 3 HOH B 50 450 152 HOH HOH . F 3 HOH B 51 451 111 HOH HOH . F 3 HOH B 52 452 157 HOH HOH . F 3 HOH B 53 453 107 HOH HOH . F 3 HOH B 54 454 3 HOH HOH . F 3 HOH B 55 455 46 HOH HOH . F 3 HOH B 56 456 144 HOH HOH . F 3 HOH B 57 457 146 HOH HOH . F 3 HOH B 58 458 131 HOH HOH . F 3 HOH B 59 459 145 HOH HOH . F 3 HOH B 60 460 96 HOH HOH . F 3 HOH B 61 461 108 HOH HOH . F 3 HOH B 62 462 162 HOH HOH . F 3 HOH B 63 463 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IYU . . . D 2 -4.196 -32.663 36.356 1 39.18 ? N1 IYU 301 B 1 HETATM 2 C C7 IYU . . . D 2 -3.663 -30.314 36.83 1 37.7 ? C7 IYU 301 B 1 HETATM 3 C C8 IYU . . . D 2 -3.941 -31.683 37.418 1 38.98 ? C8 IYU 301 B 1 HETATM 4 N N2 IYU . . . D 2 -10.441 -18.43 29.193 1 38.48 ? N2 IYU 301 B 1 HETATM 5 C C9 IYU . . . D 2 -4.938 -34.954 37.616 1 36.29 ? C9 IYU 301 B 1 HETATM 6 O O1 IYU . . . D 2 -6.731 -25.742 39.815 1 38.42 ? O1 IYU 301 B 1 HETATM 7 C C1 IYU . . . D 2 -8.572 -24.819 38.63 1 36.36 ? C1 IYU 301 B 1 HETATM 8 O O5 IYU . . . D 2 -9.84 -16.873 35.056 1 42.96 -1 O5 IYU 301 B 1 HETATM 9 C C5 IYU . . . D 2 -4.28 -28.754 38.734 1 39.48 ? C5 IYU 301 B 1 HETATM 10 C C6 IYU . . . D 2 -3.187 -29.29 37.848 1 38.47 ? C6 IYU 301 B 1 HETATM 11 N N3 IYU . . . D 2 -2.792 -17.554 34.743 1 32.67 ? N3 IYU 301 B 1 HETATM 12 C C4 IYU . . . D 2 -4.527 -26.643 39.844 1 38.71 ? C4 IYU 301 B 1 HETATM 13 O O4 IYU . . . D 2 -6.513 -32.977 37.086 1 35.69 ? O4 IYU 301 B 1 HETATM 14 C C3 IYU . . . D 2 -5.955 -26.876 39.47 1 37.31 ? C3 IYU 301 B 1 HETATM 15 O O3 IYU . . . D 2 -5.619 -34.296 35.212 1 37.1 ? O3 IYU 301 B 1 HETATM 16 C C2 IYU . . . D 2 -7.076 -24.927 38.704 1 36.47 ? C2 IYU 301 B 1 HETATM 17 N N IYU . . . D 2 -9.012 -23.49 38.228 1 36.18 ? N IYU 301 B 1 HETATM 18 C C IYU . . . D 2 -8.847 -23.033 36.985 1 35.13 ? C IYU 301 B 1 HETATM 19 O O IYU . . . D 2 -8.35 -23.72 36.098 1 32.09 ? O IYU 301 B 1 HETATM 20 C C10 IYU . . . D 2 -9.275 -21.626 36.718 1 34.79 ? C10 IYU 301 B 1 HETATM 21 C C11 IYU . . . D 2 -10.281 -20.995 37.438 1 34.2 ? C11 IYU 301 B 1 HETATM 22 C C12 IYU . . . D 2 -10.636 -19.689 37.155 1 33.77 ? C12 IYU 301 B 1 HETATM 23 C C13 IYU . . . D 2 -9.991 -18.977 36.144 1 35.1 ? C13 IYU 301 B 1 HETATM 24 C C14 IYU . . . D 2 -10.461 -17.563 35.9 1 40.52 ? C14 IYU 301 B 1 HETATM 25 C C15 IYU . . . D 2 -8.973 -19.609 35.404 1 34.55 ? C15 IYU 301 B 1 HETATM 26 C C16 IYU . . . D 2 -8.253 -18.947 34.283 1 32 ? C16 IYU 301 B 1 HETATM 27 C C17 IYU . . . D 2 -8.825 -18.814 33.034 1 32.13 ? C17 IYU 301 B 1 HETATM 28 C C18 IYU . . . D 2 -10.139 -19.18 32.773 1 34.16 ? C18 IYU 301 B 1 HETATM 29 C C19 IYU . . . D 2 -10.677 -19.061 31.503 1 37.41 ? C19 IYU 301 B 1 HETATM 30 C C20 IYU . . . D 2 -9.911 -18.562 30.447 1 37.31 ? C20 IYU 301 B 1 HETATM 31 C C21 IYU . . . D 2 -11.822 -18.801 28.933 1 41.3 ? C21 IYU 301 B 1 HETATM 32 C C22 IYU . . . D 2 -9.569 -18.304 28.037 1 36.41 ? C22 IYU 301 B 1 HETATM 33 C C23 IYU . . . D 2 -8.589 -18.194 30.705 1 36.94 ? C23 IYU 301 B 1 HETATM 34 C C24 IYU . . . D 2 -8.061 -18.322 31.972 1 34.37 ? C24 IYU 301 B 1 HETATM 35 C C25 IYU . . . D 2 -6.852 -18.551 34.477 1 32.17 ? C25 IYU 301 B 1 HETATM 36 C C26 IYU . . . D 2 -6.172 -18.639 35.687 1 31.27 ? C26 IYU 301 B 1 HETATM 37 C C27 IYU . . . D 2 -4.834 -18.3 35.779 1 33.97 ? C27 IYU 301 B 1 HETATM 38 C C28 IYU . . . D 2 -6.145 -18.087 33.37 1 33.54 ? C28 IYU 301 B 1 HETATM 39 C C29 IYU . . . D 2 -4.81 -17.749 33.447 1 30.09 ? C29 IYU 301 B 1 HETATM 40 C C30 IYU . . . D 2 -4.124 -17.859 34.659 1 31.32 ? C30 IYU 301 B 1 HETATM 41 C C31 IYU . . . D 2 -2.083 -17.667 36.008 1 32.22 ? C31 IYU 301 B 1 HETATM 42 C C32 IYU . . . D 2 -2.12 -16.855 33.66 1 32.19 ? C32 IYU 301 B 1 HETATM 43 C C33 IYU . . . D 2 -8.628 -20.928 35.703 1 35.26 ? C33 IYU 301 B 1 HETATM 44 O O2 IYU . . . D 2 -3.724 -27.803 39.632 1 42.61 ? O2 IYU 301 B 1 HETATM 45 O O6 IYU . . . D 2 -11.421 -17.133 36.577 1 44.34 ? O6 IYU 301 B 1 HETATM 46 O O7 IYU . . . D 2 -6.732 -17.963 32.124 1 31.8 ? O7 IYU 301 B 1 HETATM 47 S S IYU . . . D 2 -5.428 -33.7 36.495 1 39.38 ? S IYU 301 B 1 # _model_server_stats.io_time_ms 21 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 47 #