data_7ZJM # _model_server_result.job_id IcI9VC93Jez2eAl8FMQZog _model_server_result.datetime_utc '2024-11-24 23:57:02' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zjm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":205}' # _entry.id 7ZJM # _exptl.entry_id 7ZJM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 69.085 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description IMIDAZOLE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZJM _cell.length_a 42.098 _cell.length_b 71.069 _cell.length_c 147.746 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZJM _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N ? 4 G N N ? 4 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 B SG CYS 5 B CYS 5 1_555 B SG CYS 54 B CYS 54 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.064 ? disulf ? disulf2 B SG CYS 37 B CYS 37 1_555 B SG CYS 65 B CYS 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? disulf ? disulf3 B SG CYS 69 B CYS 69 1_555 B SG CYS 111 B CYS 111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.098 ? disulf ? disulf4 B SG CYS 96 B CYS 96 1_555 B SG CYS 122 B CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc1 A OE2 GLU 47 A GLU 47 1_555 M ZN ZN . B ZN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.241 ? metalc ? metalc2 A OD1 ASP 55 A ASP 55 1_555 N ZN ZN . B ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.572 ? metalc ? metalc3 A OE2 GLU 101 A GLU 101 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.056 ? metalc ? metalc4 A NE2 HIS 115 A HIS 115 1_555 C ZN ZN . A ZN 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 A OE2 GLU 210 A GLU 210 1_555 D ZN ZN . A ZN 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.167 ? metalc ? metalc6 A O LEU 221 A LEU 221 1_555 J ZN ZN . B ZN 206 2_454 ? ? ? ? ? ? ? ? ? ? ? ? 1.962 ? metalc ? metalc7 C ZN ZN . A ZN 301 3_555 B OD1 ASP 93 B ASP 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc8 C ZN ZN . A ZN 301 3_555 B OD2 ASP 93 B ASP 93 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.923 ? metalc ? metalc9 C ZN ZN . A ZN 301 1_555 P O HOH . B HOH 307 3_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.127 ? metalc ? metalc10 D ZN ZN . A ZN 302 1_555 O O HOH . A HOH 405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.273 ? metalc ? metalc11 B NE2 HIS 12 B HIS 12 1_555 J ZN ZN . B ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.062 ? metalc ? metalc12 B OE1 GLU 18 B GLU 18 1_555 L ZN ZN . B ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.093 ? metalc ? metalc13 B OE2 GLU 18 B GLU 18 1_555 L ZN ZN . B ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? metalc ? metalc14 B NE2 HIS 40 B HIS 40 1_555 N ZN ZN . B ZN 210 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.097 ? metalc ? metalc15 B NE2 HIS 51 B HIS 51 1_555 K ZN ZN . B ZN 207 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc16 B NE2 HIS 53 B HIS 53 1_555 L ZN ZN . B ZN 208 4_546 ? ? ? ? ? ? ? ? ? ? ? ? 1.815 ? metalc ? metalc17 B NE2 HIS 82 B HIS 82 1_555 M ZN ZN . B ZN 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.103 ? metalc ? metalc18 B OE1 GLU 113 B GLU 113 1_555 J ZN ZN . B ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc19 B OE2 GLU 113 B GLU 113 1_555 J ZN ZN . B ZN 206 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc20 E N1 IMD . B IMD 201 1_555 K ZN ZN . B ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc21 F N3 IMD . B IMD 202 1_555 K ZN ZN . B ZN 207 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.054 ? metalc ? metalc22 G N1 IMD . B IMD 203 1_555 L ZN ZN . B ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc23 I N3 IMD . B IMD 205 1_555 L ZN ZN . B ZN 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.201 ? metalc ? metalc24 J ZN ZN . B ZN 206 1_555 P O HOH . B HOH 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? # _chem_comp.formula 'C3 H5 N2 1' _chem_comp.formula_weight 69.085 _chem_comp.id IMD _chem_comp.mon_nstd_flag . _chem_comp.name IMIDAZOLE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 IMD sing 173 n y N1 C5 IMD sing 174 n y N1 HN1 IMD sing 175 n n C2 N3 IMD doub 176 n y C2 H2 IMD sing 177 n n N3 C4 IMD sing 178 n y N3 HN3 IMD sing 179 n n C4 C5 IMD doub 180 n y C4 H4 IMD sing 181 n n C5 H5 IMD sing 182 n n # _atom_sites.entry_id 7ZJM _atom_sites.fract_transf_matrix[1][1] 0.023754 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014071 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006768 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 301 4 ZN ZN . D 3 ZN A 1 302 9 ZN ZN . E 4 IMD B 1 201 201 IMD IMD . F 4 IMD B 1 202 202 IMD IMD . G 4 IMD B 1 203 203 IMD IMD . H 5 PEG B 1 204 204 PEG PEG . I 4 IMD B 1 205 205 IMD IMD . J 3 ZN B 1 206 1 ZN ZN . K 3 ZN B 1 207 2 ZN ZN . L 3 ZN B 1 208 5 ZN ZN . M 3 ZN B 1 209 6 ZN ZN . N 3 ZN B 1 210 8 ZN ZN . O 6 HOH A 1 401 5 HOH HOH . O 6 HOH A 2 402 7 HOH HOH . O 6 HOH A 3 403 19 HOH HOH . O 6 HOH A 4 404 17 HOH HOH . O 6 HOH A 5 405 31 HOH HOH . O 6 HOH A 6 406 9 HOH HOH . O 6 HOH A 7 407 25 HOH HOH . O 6 HOH A 8 408 18 HOH HOH . O 6 HOH A 9 409 10 HOH HOH . O 6 HOH A 10 410 13 HOH HOH . O 6 HOH A 11 411 1 HOH HOH . O 6 HOH A 12 412 6 HOH HOH . O 6 HOH A 13 413 28 HOH HOH . O 6 HOH A 14 414 2 HOH HOH . O 6 HOH A 15 415 14 HOH HOH . O 6 HOH A 16 416 27 HOH HOH . O 6 HOH A 17 417 11 HOH HOH . O 6 HOH A 18 418 15 HOH HOH . O 6 HOH A 19 419 4 HOH HOH . O 6 HOH A 20 420 8 HOH HOH . O 6 HOH A 21 421 16 HOH HOH . P 6 HOH B 1 301 21 HOH HOH . P 6 HOH B 2 302 3 HOH HOH . P 6 HOH B 3 303 26 HOH HOH . P 6 HOH B 4 304 12 HOH HOH . P 6 HOH B 5 305 29 HOH HOH . P 6 HOH B 6 306 30 HOH HOH . P 6 HOH B 7 307 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 IMD . . . I 4 -6.991 -20.323 69.053 1 47.67 ? N1 IMD 205 B 1 HETATM 2 C C2 IMD . . . I 4 -7.963 -20.809 69.828 1 51.49 ? C2 IMD 205 B 1 HETATM 3 N N3 IMD . . . I 4 -7.578 -20.682 71.087 1 46.5 ? N3 IMD 205 B 1 HETATM 4 C C4 IMD . . . I 4 -6.448 -19.913 71.112 1 47.93 ? C4 IMD 205 B 1 HETATM 5 C C5 IMD . . . I 4 -5.943 -19.987 69.87 1 51.09 ? C5 IMD 205 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 320 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 5 #