data_7ZJV # _model_server_result.job_id H7bPE9rdSgFT7sH77-qWyg _model_server_result.datetime_utc '2024-10-11 08:31:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zjv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 7ZJV # _exptl.entry_id 7ZJV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 57.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description prop-2-en-1-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZJV _cell.length_a 95.708 _cell.length_b 95.708 _cell.length_c 82.88 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZJV _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 _symmetry.space_group_name_Hall 'P 4abw 2nw' _symmetry.space_group_name_H-M 'P 41 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id D _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 21 A CYS 236 1_555 D C2 AYE . A AYE 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.767 ? covale ? covale2 D N1 AYE . A AYE 802 1_555 B C GLY 76 B GLY 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.299 ? metalc ? metalc1 A SG CYS 146 A CYS 361 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.331 ? metalc ? metalc2 A SG CYS 149 A CYS 364 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.324 ? metalc ? metalc3 A SG CYS 182 A CYS 397 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.34 ? metalc ? metalc4 A SG CYS 185 A CYS 400 1_555 C ZN ZN . A ZN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? # _chem_comp.formula 'C3 H7 N' _chem_comp.formula_weight 57.094 _chem_comp.id AYE _chem_comp.mon_nstd_flag . _chem_comp.name prop-2-en-1-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ALLYLAMINE # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C2 C3 AYE doub 70 n n C2 C1 AYE sing 71 n n C1 N1 AYE sing 72 n n C2 H2 AYE sing 73 n n C3 H3 AYE sing 74 n n C3 H3A AYE sing 75 n n C1 H1 AYE sing 76 n n C1 H1A AYE sing 77 n n N1 HN1 AYE sing 78 n n N1 HN1A AYE sing 79 n n # _atom_sites.entry_id 7ZJV _atom_sites.fract_transf_matrix[1][1] 0.010448 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010448 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012066 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN A 1 801 801 ZN ZN . D 4 AYE A 1 802 92 AYE LIG . E 5 CL A 1 803 1 CL CL . F 5 CL A 1 804 2 CL CL . G 5 CL A 1 805 4 CL CL . H 5 CL B 1 101 3 CL CL . I 5 CL B 1 102 5 CL CL . J 6 HOH A 1 901 10 HOH HOH . J 6 HOH A 2 902 19 HOH HOH . J 6 HOH A 3 903 3 HOH HOH . J 6 HOH A 4 904 13 HOH HOH . J 6 HOH A 5 905 11 HOH HOH . J 6 HOH A 6 906 1 HOH HOH . J 6 HOH A 7 907 14 HOH HOH . J 6 HOH A 8 908 9 HOH HOH . J 6 HOH A 9 909 16 HOH HOH . J 6 HOH A 10 910 5 HOH HOH . J 6 HOH A 11 911 12 HOH HOH . J 6 HOH A 12 912 20 HOH HOH . J 6 HOH A 13 913 7 HOH HOH . J 6 HOH A 14 914 24 HOH HOH . J 6 HOH A 15 915 28 HOH HOH . J 6 HOH A 16 916 15 HOH HOH . J 6 HOH A 17 917 17 HOH HOH . J 6 HOH A 18 918 27 HOH HOH . J 6 HOH A 19 919 25 HOH HOH . J 6 HOH A 20 920 4 HOH HOH . J 6 HOH A 21 921 22 HOH HOH . J 6 HOH A 22 922 30 HOH HOH . J 6 HOH A 23 923 6 HOH HOH . J 6 HOH A 24 924 29 HOH HOH . K 6 HOH B 1 201 18 HOH HOH . K 6 HOH B 2 202 8 HOH HOH . K 6 HOH B 3 203 2 HOH HOH . K 6 HOH B 4 204 23 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 AYE . . . D 4 33.718 26.469 11.411 1 97.12 ? C2 AYE 802 A 1 HETATM 2 C C3 AYE . . . D 4 33.263 27.474 10.675 1 107.62 ? C3 AYE 802 A 1 HETATM 3 C C1 AYE . . . D 4 34.943 25.699 11 1 103.97 ? C1 AYE 802 A 1 HETATM 4 N N1 AYE . . . D 4 34.762 25.512 9.577 1 93.67 ? N1 AYE 802 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 308 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #