data_7ZK5
#
_model_server_result.job_id            XtO8zz0EN9hRROyduRKBtw 
_model_server_result.datetime_utc      '2025-09-12 08:38:37' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zk5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":2009}' 
#
_entry.id    7ZK5 
#
_exptl.entry_id    7ZK5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              486.726 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'CHOLESTEROL HEMISUCCINATE' 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZK5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZK5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 F N N 
? 4 G N N 
? 4 H N N 
? 4 I N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 335 A CYS 335 1_555 K S04 JIZ . A JIZ 2010 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
metalc ? metalc1 A OG SER 430 A SER 430 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? 
metalc ? metalc2 A OE1 GLN 471 A GLN 471 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? 
metalc ? metalc3 A OG SER 1073 A SER 1073 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc4 A OE1 GLN 1114 A GLN 1114 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? 
metalc ? metalc5 B O1G ATP . A ATP 2001 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.161 ? 
metalc ? metalc6 B O2B ATP . A ATP 2001 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.379 ? 
metalc ? metalc7 C MG MG . A MG 2002 1_555 L O HOH . A HOH 2107 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc8 C MG MG . A MG 2002 1_555 L O HOH . A HOH 2111 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? 
metalc ? metalc9 D O2G ATP . A ATP 2003 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? 
metalc ? metalc10 D O2B ATP . A ATP 2003 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? 
metalc ? metalc11 E MG MG . A MG 2004 1_555 L O HOH . A HOH 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.078 ? 
metalc ? metalc12 E MG MG . A MG 2004 1_555 L O HOH . A HOH 2109 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
#
_chem_comp.formula           'C31 H50 O4' 
_chem_comp.formula_weight    486.726 
_chem_comp.id                Y01 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'CHOLESTEROL HEMISUCCINATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAA CBA Y01 sing 477 n n 
CBA CAB Y01 sing 478 n n 
CBA CAN Y01 sing 479 n n 
CAN CAJ Y01 sing 480 n n 
CAJ CAO Y01 sing 481 n n 
CAO CBB Y01 sing 482 n n 
CBB CAC Y01 sing 483 n n 
CBB CBE Y01 sing 484 n n 
CBE CAP Y01 sing 485 n n 
CBE CBI Y01 sing 486 n n 
CAP CAQ Y01 sing 487 n n 
CAQ CBG Y01 sing 488 n n 
CBG CBI Y01 sing 489 n n 
CBG CBD Y01 sing 490 n n 
CBI CAE Y01 sing 491 n n 
CBI CAU Y01 sing 492 n n 
CAU CAS Y01 sing 493 n n 
CAS CBF Y01 sing 494 n n 
CBF CBD Y01 sing 495 n n 
CBF CBH Y01 sing 496 n n 
CBD CAK Y01 sing 497 n n 
CAK CAI Y01 sing 498 n n 
CAI CAZ Y01 doub 499 n n 
CAZ CAV Y01 sing 500 n n 
CAZ CBH Y01 sing 501 n n 
CAV CBC Y01 sing 502 n n 
CBH CAD Y01 sing 503 n n 
CBH CAT Y01 sing 504 n n 
CAT CAR Y01 sing 505 n n 
CAR CBC Y01 sing 506 n n 
CBC OAW Y01 sing 507 n n 
OAW CAY Y01 sing 508 n n 
CAY OAG Y01 doub 509 n n 
CAY CAM Y01 sing 510 n n 
CAM CAL Y01 sing 511 n n 
CAL CAX Y01 sing 512 n n 
CAX OAH Y01 sing 513 n n 
CAX OAF Y01 doub 514 n n 
CAA HAA1 Y01 sing 515 n n 
CAA HAA2 Y01 sing 516 n n 
CAA HAA3 Y01 sing 517 n n 
CBA HBA Y01 sing 518 n n 
CAB HAB1 Y01 sing 519 n n 
CAB HAB2 Y01 sing 520 n n 
CAB HAB3 Y01 sing 521 n n 
CAN HAN1 Y01 sing 522 n n 
CAN HAN2 Y01 sing 523 n n 
CAJ HAJ1 Y01 sing 524 n n 
CAJ HAJ2 Y01 sing 525 n n 
CAO HAO1 Y01 sing 526 n n 
CAO HAO2 Y01 sing 527 n n 
CBB HBB Y01 sing 528 n n 
CAC HAC1 Y01 sing 529 n n 
CAC HAC2 Y01 sing 530 n n 
CAC HAC3 Y01 sing 531 n n 
CBE HBE Y01 sing 532 n n 
CAP HAP1 Y01 sing 533 n n 
CAP HAP2 Y01 sing 534 n n 
CAQ HAQ1 Y01 sing 535 n n 
CAQ HAQ2 Y01 sing 536 n n 
CBG HBG Y01 sing 537 n n 
CBD HBD Y01 sing 538 n n 
CAE HAE1 Y01 sing 539 n n 
CAE HAE2 Y01 sing 540 n n 
CAE HAE3 Y01 sing 541 n n 
CAU HAU1 Y01 sing 542 n n 
CAU HAU2 Y01 sing 543 n n 
CAS HAS1 Y01 sing 544 n n 
CAS HAS2 Y01 sing 545 n n 
CBF HBF Y01 sing 546 n n 
CAK HAK1 Y01 sing 547 n n 
CAK HAK2 Y01 sing 548 n n 
CAI HAI Y01 sing 549 n n 
CAV HAV1 Y01 sing 550 n n 
CAV HAV2 Y01 sing 551 n n 
CBC HBC Y01 sing 552 n n 
CAD HAD1 Y01 sing 553 n n 
CAD HAD2 Y01 sing 554 n n 
CAD HAD3 Y01 sing 555 n n 
CAT HAT1 Y01 sing 556 n n 
CAT HAT2 Y01 sing 557 n n 
CAR HAR1 Y01 sing 558 n n 
CAR HAR2 Y01 sing 559 n n 
CAM HAM1 Y01 sing 560 n n 
CAM HAM2 Y01 sing 561 n n 
CAL HAL1 Y01 sing 562 n n 
CAL HAL2 Y01 sing 563 n n 
OAH HAH Y01 sing 564 n n 
#
_atom_sites.entry_id                     7ZK5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ATP A 1 2001 2001 ATP ATP . 
C 3 MG A 1 2002 2002 MG MG . 
D 2 ATP A 1 2003 2005 ATP ATP . 
E 3 MG A 1 2004 2006 MG MG . 
F 4 Y01 A 1 2005 2013 Y01 Y01 . 
G 4 Y01 A 1 2006 2014 Y01 Y01 . 
H 4 Y01 A 1 2007 2015 Y01 Y01 . 
I 4 Y01 A 1 2008 2017 Y01 Y01 . 
J 4 Y01 A 1 2009 2018 Y01 Y01 . 
K 5 JIZ A 1 2010 2000 JIZ LIG . 
L 6 HOH A 1 2101 2031 HOH HOH . 
L 6 HOH A 2 2102 2022 HOH HOH . 
L 6 HOH A 3 2103 2019 HOH HOH . 
L 6 HOH A 4 2104 2007 HOH HOH . 
L 6 HOH A 5 2105 2034 HOH HOH . 
L 6 HOH A 6 2106 2024 HOH HOH . 
L 6 HOH A 7 2107 2004 HOH HOH . 
L 6 HOH A 8 2108 2038 HOH HOH . 
L 6 HOH A 9 2109 2008 HOH HOH . 
L 6 HOH A 10 2110 2010 HOH HOH . 
L 6 HOH A 11 2111 2003 HOH HOH . 
L 6 HOH A 12 2112 2015 HOH HOH . 
L 6 HOH A 13 2113 2017 HOH HOH . 
L 6 HOH A 14 2114 2033 HOH HOH . 
L 6 HOH A 15 2115 2028 HOH HOH . 
L 6 HOH A 16 2116 2012 HOH HOH . 
L 6 HOH A 17 2117 2029 HOH HOH . 
L 6 HOH A 18 2118 2023 HOH HOH . 
L 6 HOH A 19 2119 2037 HOH HOH . 
L 6 HOH A 20 2120 2032 HOH HOH . 
L 6 HOH A 21 2121 2014 HOH HOH . 
L 6 HOH A 22 2122 2026 HOH HOH . 
L 6 HOH A 23 2123 2036 HOH HOH . 
L 6 HOH A 24 2124 2021 HOH HOH . 
L 6 HOH A 25 2125 2016 HOH HOH . 
L 6 HOH A 26 2126 2018 HOH HOH . 
L 6 HOH A 27 2127 2027 HOH HOH . 
L 6 HOH A 28 2128 2030 HOH HOH . 
L 6 HOH A 29 2129 2013 HOH HOH . 
L 6 HOH A 30 2130 2020 HOH HOH . 
L 6 HOH A 31 2131 2025 HOH HOH . 
L 6 HOH A 32 2132 2009 HOH HOH . 
L 6 HOH A 33 2133 2035 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C CAA Y01 . . . J 4 99.898 127.267 139.335 1 69.86 ? CAA Y01 2009 A 1 
HETATM 2 C CBA Y01 . . . J 4 100.905 126.81 140.377 1 69.86 ? CBA Y01 2009 A 1 
HETATM 3 C CAB Y01 . . . J 4 102.321 126.837 139.831 1 69.86 ? CAB Y01 2009 A 1 
HETATM 4 C CAN Y01 . . . J 4 100.548 125.434 140.896 1 69.86 ? CAN Y01 2009 A 1 
HETATM 5 C CAJ Y01 . . . J 4 99.607 125.444 142.052 1 69.86 ? CAJ Y01 2009 A 1 
HETATM 6 C CAO Y01 . . . J 4 99.889 126.6 142.948 1 69.86 ? CAO Y01 2009 A 1 
HETATM 7 C CBB Y01 . . . J 4 99.268 126.524 144.353 1 69.86 ? CBB Y01 2009 A 1 
HETATM 8 C CAC Y01 . . . J 4 99.538 125.16 144.983 1 69.86 ? CAC Y01 2009 A 1 
HETATM 9 C CBE Y01 . . . J 4 99.744 127.697 145.229 1 69.86 ? CBE Y01 2009 A 1 
HETATM 10 C CAP Y01 . . . J 4 99.529 129.057 144.523 1 69.86 ? CAP Y01 2009 A 1 
HETATM 11 C CAQ Y01 . . . J 4 99.312 130.117 145.617 1 69.86 ? CAQ Y01 2009 A 1 
HETATM 12 C CBG Y01 . . . J 4 99.474 129.367 146.935 1 69.86 ? CBG Y01 2009 A 1 
HETATM 13 C CBI Y01 . . . J 4 99.092 127.915 146.624 1 69.86 ? CBI Y01 2009 A 1 
HETATM 14 C CAE Y01 . . . J 4 97.569 127.729 146.514 1 69.86 ? CAE Y01 2009 A 1 
HETATM 15 C CAU Y01 . . . J 4 99.66 127.127 147.802 1 69.86 ? CAU Y01 2009 A 1 
HETATM 16 C CAS Y01 . . . J 4 98.98 127.542 149.108 1 69.86 ? CAS Y01 2009 A 1 
HETATM 17 C CBF Y01 . . . J 4 99.056 129.045 149.407 1 69.86 ? CBF Y01 2009 A 1 
HETATM 18 C CBD Y01 . . . J 4 98.756 129.901 148.163 1 69.86 ? CBD Y01 2009 A 1 
HETATM 19 C CAK Y01 . . . J 4 99.098 131.36 148.448 1 69.86 ? CAK Y01 2009 A 1 
HETATM 20 C CAI Y01 . . . J 4 98.64 131.771 149.811 1 69.86 ? CAI Y01 2009 A 1 
HETATM 21 C CAZ Y01 . . . J 4 98.028 130.962 150.663 1 69.86 ? CAZ Y01 2009 A 1 
HETATM 22 C CAV Y01 . . . J 4 97.223 131.5 151.825 1 69.86 ? CAV Y01 2009 A 1 
HETATM 23 C CBH Y01 . . . J 4 98.11 129.445 150.568 1 69.86 ? CBH Y01 2009 A 1 
HETATM 24 C CAD Y01 . . . J 4 96.694 128.89 150.334 1 69.86 ? CAD Y01 2009 A 1 
HETATM 25 C CAT Y01 . . . J 4 98.65 128.95 151.927 1 69.86 ? CAT Y01 2009 A 1 
HETATM 26 C CAR Y01 . . . J 4 97.808 129.442 153.109 1 69.86 ? CAR Y01 2009 A 1 
HETATM 27 C CBC Y01 . . . J 4 97.675 130.944 153.157 1 69.86 ? CBC Y01 2009 A 1 
HETATM 28 O OAW Y01 . . . J 4 96.604 131.289 154.084 1 69.86 ? OAW Y01 2009 A 1 
HETATM 29 C CAY Y01 . . . J 4 96.824 131.249 155.395 1 69.86 ? CAY Y01 2009 A 1 
HETATM 30 O OAG Y01 . . . J 4 97.892 131.439 155.902 1 69.86 ? OAG Y01 2009 A 1 
HETATM 31 C CAM Y01 . . . J 4 95.563 130.952 156.159 1 69.86 ? CAM Y01 2009 A 1 
HETATM 32 C CAL Y01 . . . J 4 95.682 130.879 157.667 1 69.86 ? CAL Y01 2009 A 1 
HETATM 33 C CAX Y01 . . . J 4 94.393 130.545 158.398 1 69.86 ? CAX Y01 2009 A 1 
HETATM 34 O OAH Y01 . . . J 4 93.415 131.306 158.252 1 69.86 ? OAH Y01 2009 A 1 
HETATM 35 O OAF Y01 . . . J 4 94.372 129.527 159.117 1 69.86 ? OAF Y01 2009 A 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    8 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           35 
#