data_7ZK8 # _model_server_result.job_id aWzh_poHhnRerpaD13NQpw _model_server_result.datetime_utc '2024-12-03 12:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zk8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":2007}' # _entry.id 7ZK8 # _exptl.entry_id 7ZK8 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZK8 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZK8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 G N N ? 5 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 971 A CYS 971 1_555 F S04 JIZ . A JIZ 2005 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc1 A OG SER 430 A SER 430 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.253 ? metalc ? metalc2 A OE1 GLN 471 A GLN 471 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? metalc ? metalc3 A OG SER 1073 A SER 1073 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.348 ? metalc ? metalc4 A OE1 GLN 1114 A GLN 1114 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc5 B O1G ATP . A ATP 2001 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.191 ? metalc ? metalc6 B O2B ATP . A ATP 2001 1_555 C MG MG . A MG 2002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc7 C MG MG . A MG 2002 1_555 I O HOH . A HOH 2101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc8 C MG MG . A MG 2002 1_555 I O HOH . A HOH 2102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? metalc ? metalc9 D O2G ATP . A ATP 2003 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc10 D O2B ATP . A ATP 2003 1_555 E MG MG . A MG 2004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.366 ? metalc ? metalc11 E MG MG . A MG 2004 1_555 I O HOH . A HOH 2103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? metalc ? metalc12 E MG MG . A MG 2004 1_555 I O HOH . A HOH 2104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 477 n n CBA CAB Y01 sing 478 n n CBA CAN Y01 sing 479 n n CAN CAJ Y01 sing 480 n n CAJ CAO Y01 sing 481 n n CAO CBB Y01 sing 482 n n CBB CAC Y01 sing 483 n n CBB CBE Y01 sing 484 n n CBE CAP Y01 sing 485 n n CBE CBI Y01 sing 486 n n CAP CAQ Y01 sing 487 n n CAQ CBG Y01 sing 488 n n CBG CBI Y01 sing 489 n n CBG CBD Y01 sing 490 n n CBI CAE Y01 sing 491 n n CBI CAU Y01 sing 492 n n CAU CAS Y01 sing 493 n n CAS CBF Y01 sing 494 n n CBF CBD Y01 sing 495 n n CBF CBH Y01 sing 496 n n CBD CAK Y01 sing 497 n n CAK CAI Y01 sing 498 n n CAI CAZ Y01 doub 499 n n CAZ CAV Y01 sing 500 n n CAZ CBH Y01 sing 501 n n CAV CBC Y01 sing 502 n n CBH CAD Y01 sing 503 n n CBH CAT Y01 sing 504 n n CAT CAR Y01 sing 505 n n CAR CBC Y01 sing 506 n n CBC OAW Y01 sing 507 n n OAW CAY Y01 sing 508 n n CAY OAG Y01 doub 509 n n CAY CAM Y01 sing 510 n n CAM CAL Y01 sing 511 n n CAL CAX Y01 sing 512 n n CAX OAH Y01 sing 513 n n CAX OAF Y01 doub 514 n n CAA HAA1 Y01 sing 515 n n CAA HAA2 Y01 sing 516 n n CAA HAA3 Y01 sing 517 n n CBA HBA Y01 sing 518 n n CAB HAB1 Y01 sing 519 n n CAB HAB2 Y01 sing 520 n n CAB HAB3 Y01 sing 521 n n CAN HAN1 Y01 sing 522 n n CAN HAN2 Y01 sing 523 n n CAJ HAJ1 Y01 sing 524 n n CAJ HAJ2 Y01 sing 525 n n CAO HAO1 Y01 sing 526 n n CAO HAO2 Y01 sing 527 n n CBB HBB Y01 sing 528 n n CAC HAC1 Y01 sing 529 n n CAC HAC2 Y01 sing 530 n n CAC HAC3 Y01 sing 531 n n CBE HBE Y01 sing 532 n n CAP HAP1 Y01 sing 533 n n CAP HAP2 Y01 sing 534 n n CAQ HAQ1 Y01 sing 535 n n CAQ HAQ2 Y01 sing 536 n n CBG HBG Y01 sing 537 n n CBD HBD Y01 sing 538 n n CAE HAE1 Y01 sing 539 n n CAE HAE2 Y01 sing 540 n n CAE HAE3 Y01 sing 541 n n CAU HAU1 Y01 sing 542 n n CAU HAU2 Y01 sing 543 n n CAS HAS1 Y01 sing 544 n n CAS HAS2 Y01 sing 545 n n CBF HBF Y01 sing 546 n n CAK HAK1 Y01 sing 547 n n CAK HAK2 Y01 sing 548 n n CAI HAI Y01 sing 549 n n CAV HAV1 Y01 sing 550 n n CAV HAV2 Y01 sing 551 n n CBC HBC Y01 sing 552 n n CAD HAD1 Y01 sing 553 n n CAD HAD2 Y01 sing 554 n n CAD HAD3 Y01 sing 555 n n CAT HAT1 Y01 sing 556 n n CAT HAT2 Y01 sing 557 n n CAR HAR1 Y01 sing 558 n n CAR HAR2 Y01 sing 559 n n CAM HAM1 Y01 sing 560 n n CAM HAM2 Y01 sing 561 n n CAL HAL1 Y01 sing 562 n n CAL HAL2 Y01 sing 563 n n OAH HAH Y01 sing 564 n n # _atom_sites.entry_id 7ZK8 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 ATP A 1 2001 2001 ATP ATP . C 3 MG A 1 2002 2002 MG MG . D 2 ATP A 1 2003 2005 ATP ATP . E 3 MG A 1 2004 2006 MG MG . F 4 JIZ A 1 2005 2010 JIZ LIG . G 5 Y01 A 1 2006 2013 Y01 Y01 . H 5 Y01 A 1 2007 2014 Y01 Y01 . I 6 HOH A 1 2101 2003 HOH HOH . I 6 HOH A 2 2102 2004 HOH HOH . I 6 HOH A 3 2103 2007 HOH HOH . I 6 HOH A 4 2104 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . H 5 129.696 118.413 120.183 1 52.52 ? CAA Y01 2007 A 1 HETATM 2 C CBA Y01 . . . H 5 129.001 117.068 120.331 1 52.52 ? CBA Y01 2007 A 1 HETATM 3 C CAB Y01 . . . H 5 129.816 115.972 119.663 1 52.52 ? CAB Y01 2007 A 1 HETATM 4 C CAN Y01 . . . H 5 128.736 116.745 121.797 1 52.52 ? CAN Y01 2007 A 1 HETATM 5 C CAJ Y01 . . . H 5 127.882 115.537 122.048 1 52.52 ? CAJ Y01 2007 A 1 HETATM 6 C CAO Y01 . . . H 5 126.436 115.765 121.715 1 52.52 ? CAO Y01 2007 A 1 HETATM 7 C CBB Y01 . . . H 5 125.544 114.517 121.795 1 52.52 ? CBB Y01 2007 A 1 HETATM 8 C CAC Y01 . . . H 5 124.231 114.798 122.52 1 52.52 ? CAC Y01 2007 A 1 HETATM 9 C CBE Y01 . . . H 5 125.36 113.805 120.438 1 52.52 ? CBE Y01 2007 A 1 HETATM 10 C CAP Y01 . . . H 5 124.101 112.897 120.466 1 52.52 ? CAP Y01 2007 A 1 HETATM 11 C CAQ Y01 . . . H 5 123.628 112.743 119.013 1 52.52 ? CAQ Y01 2007 A 1 HETATM 12 C CBG Y01 . . . H 5 124.752 113.377 118.2 1 52.52 ? CBG Y01 2007 A 1 HETATM 13 C CBI Y01 . . . H 5 125.263 114.546 119.063 1 52.52 ? CBI Y01 2007 A 1 HETATM 14 C CAE Y01 . . . H 5 124.254 115.702 119.106 1 52.52 ? CAE Y01 2007 A 1 HETATM 15 C CAU Y01 . . . H 5 126.566 115.002 118.395 1 52.52 ? CAU Y01 2007 A 1 HETATM 16 C CAS Y01 . . . H 5 126.379 115.389 116.92 1 52.52 ? CAS Y01 2007 A 1 HETATM 17 C CBF Y01 . . . H 5 125.762 114.26 116.083 1 52.52 ? CBF Y01 2007 A 1 HETATM 18 C CBD Y01 . . . H 5 124.478 113.734 116.749 1 52.52 ? CBD Y01 2007 A 1 HETATM 19 C CAK Y01 . . . H 5 124.01 112.501 115.999 1 52.52 ? CAK Y01 2007 A 1 HETATM 20 C CAI Y01 . . . H 5 123.838 112.814 114.556 1 52.52 ? CAI Y01 2007 A 1 HETATM 21 C CAZ Y01 . . . H 5 124.711 113.544 113.898 1 52.52 ? CAZ Y01 2007 A 1 HETATM 22 C CAV Y01 . . . H 5 124.919 113.332 112.42 1 52.52 ? CAV Y01 2007 A 1 HETATM 23 C CBH Y01 . . . H 5 125.566 114.606 114.576 1 52.52 ? CBH Y01 2007 A 1 HETATM 24 C CAD Y01 . . . H 5 124.885 115.969 114.371 1 52.52 ? CAD Y01 2007 A 1 HETATM 25 C CAT Y01 . . . H 5 126.939 114.598 113.875 1 52.52 ? CAT Y01 2007 A 1 HETATM 26 C CAR Y01 . . . H 5 127.266 113.25 113.237 1 52.52 ? CAR Y01 2007 A 1 HETATM 27 C CBC Y01 . . . H 5 126.334 112.921 112.102 1 52.52 ? CBC Y01 2007 A 1 HETATM 28 O OAW Y01 . . . H 5 126.73 113.686 110.935 1 52.52 ? OAW Y01 2007 A 1 HETATM 29 C CAY Y01 . . . H 5 126.059 113.485 109.824 1 52.52 ? CAY Y01 2007 A 1 HETATM 30 O OAG Y01 . . . H 5 125.052 114.064 109.543 1 52.52 ? OAG Y01 2007 A 1 HETATM 31 C CAM Y01 . . . H 5 126.716 112.441 108.97 1 52.52 ? CAM Y01 2007 A 1 HETATM 32 C CAL Y01 . . . H 5 126.143 112.195 107.601 1 52.52 ? CAL Y01 2007 A 1 HETATM 33 C CAX Y01 . . . H 5 124.862 111.385 107.575 1 52.52 ? CAX Y01 2007 A 1 HETATM 34 O OAH Y01 . . . H 5 123.84 111.861 108.095 1 52.52 ? OAH Y01 2007 A 1 HETATM 35 O OAF Y01 . . . H 5 124.896 110.281 107.03 1 52.52 ? OAF Y01 2007 A 1 # _model_server_stats.io_time_ms 78 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 20 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #