data_7ZKA # _model_server_result.job_id Oyyy5thYz66UsQCGbQjCtg _model_server_result.datetime_utc '2025-02-05 05:53:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":1402}' # _entry.id 7ZKA # _exptl.entry_id 7ZKA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZKA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 978 A CYS 978 1_555 B S04 JIZ . A JIZ 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A OG SER 430 A SER 430 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 A OE1 GLN 471 A GLN 471 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A OG SER 1073 A SER 1073 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 A OE1 GLN 1114 A GLN 1114 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 C O1G ATP . A ATP 1402 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc6 C O2B ATP . A ATP 1402 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc7 D MG MG . A MG 1403 1_555 K O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc8 D MG MG . A MG 1403 1_555 K O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 E O2G ATP . A ATP 1404 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc10 E O2B ATP . A ATP 1404 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc11 F MG MG . A MG 1405 1_555 K O HOH . A HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc12 F MG MG . A MG 1405 1_555 K O HOH . A HOH 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7ZKA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JIZ A 1 1401 2000 JIZ LIG . C 3 ATP A 1 1402 2001 ATP ATP . D 4 MG A 1 1403 2002 MG MG . E 3 ATP A 1 1404 2005 ATP ATP . F 4 MG A 1 1405 2006 MG MG . G 5 LMN A 1 1406 2010 LMN LMN . H 6 Y01 A 1 1407 2013 Y01 Y01 . I 6 Y01 A 1 1408 2014 Y01 Y01 . J 6 Y01 A 1 1409 2015 Y01 Y01 . K 7 HOH A 1 1501 2003 HOH HOH . K 7 HOH A 2 1502 2004 HOH HOH . K 7 HOH A 3 1503 2007 HOH HOH . K 7 HOH A 4 1504 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . C 3 122.612 108.448 63.628 1 0 ? PG ATP 1402 A 1 HETATM 2 O O1G ATP . . . C 3 121.637 109.339 64.32 1 0 ? O1G ATP 1402 A 1 HETATM 3 O O2G ATP . . . C 3 122.517 106.982 64.064 1 0 ? O2G ATP 1402 A 1 HETATM 4 O O3G ATP . . . C 3 122.542 108.526 62.099 1 0 ? O3G ATP 1402 A 1 HETATM 5 P PB ATP . . . C 3 124.974 110.184 64.228 1 0 ? PB ATP 1402 A 1 HETATM 6 O O1B ATP . . . C 3 125.731 110.583 63.03 1 0 ? O1B ATP 1402 A 1 HETATM 7 O O2B ATP . . . C 3 124.033 111.24 64.806 1 0 ? O2B ATP 1402 A 1 HETATM 8 O O3B ATP . . . C 3 124.111 108.875 63.984 1 0 ? O3B ATP 1402 A 1 HETATM 9 P PA ATP . . . C 3 126.301 110.203 66.868 1 0 ? PA ATP 1402 A 1 HETATM 10 O O1A ATP . . . C 3 125.1 110.293 67.723 1 0 ? O1A ATP 1402 A 1 HETATM 11 O O2A ATP . . . C 3 127.103 111.494 66.736 1 0 ? O2A ATP 1402 A 1 HETATM 12 O O3A ATP . . . C 3 125.943 109.719 65.401 1 0 ? O3A ATP 1402 A 1 HETATM 13 O O5' ATP . . . C 3 127.271 109.062 67.364 1 0 ? O5' ATP 1402 A 1 HETATM 14 C C5' ATP . . . C 3 128.702 109.248 67.38 1 0 ? C5' ATP 1402 A 1 HETATM 15 C C4' ATP . . . C 3 129.329 108.227 68.298 1 0 ? C4' ATP 1402 A 1 HETATM 16 O O4' ATP . . . C 3 129.411 108.763 69.637 1 0 ? O4' ATP 1402 A 1 HETATM 17 C C3' ATP . . . C 3 128.589 106.897 68.42 1 0 ? C3' ATP 1402 A 1 HETATM 18 O O3' ATP . . . C 3 129.504 105.817 68.563 1 0 ? O3' ATP 1402 A 1 HETATM 19 C C2' ATP . . . C 3 127.736 107.093 69.676 1 0 ? C2' ATP 1402 A 1 HETATM 20 O O2' ATP . . . C 3 127.478 105.859 70.336 1 0 ? O2' ATP 1402 A 1 HETATM 21 C C1' ATP . . . C 3 128.639 107.983 70.532 1 0 ? C1' ATP 1402 A 1 HETATM 22 N N9 ATP . . . C 3 127.911 108.891 71.412 1 0 ? N9 ATP 1402 A 1 HETATM 23 C C8 ATP . . . C 3 126.816 109.65 71.092 1 0 ? C8 ATP 1402 A 1 HETATM 24 N N7 ATP . . . C 3 126.364 110.382 72.08 1 0 ? N7 ATP 1402 A 1 HETATM 25 C C5 ATP . . . C 3 127.224 110.085 73.127 1 0 ? C5 ATP 1402 A 1 HETATM 26 C C6 ATP . . . C 3 127.289 110.534 74.46 1 0 ? C6 ATP 1402 A 1 HETATM 27 N N6 ATP . . . C 3 126.435 111.415 74.992 1 0 ? N6 ATP 1402 A 1 HETATM 28 N N1 ATP . . . C 3 128.272 110.038 75.244 1 0 ? N1 ATP 1402 A 1 HETATM 29 C C2 ATP . . . C 3 129.126 109.155 74.721 1 0 ? C2 ATP 1402 A 1 HETATM 30 N N3 ATP . . . C 3 129.165 108.662 73.481 1 0 ? N3 ATP 1402 A 1 HETATM 31 C C4 ATP . . . C 3 128.182 109.167 72.729 1 0 ? C4 ATP 1402 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 311 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #