data_7ZKA # _model_server_result.job_id RPlPLbYgwxDhRt3-rg939Q _model_server_result.datetime_utc '2025-02-05 06:08:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zka # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":1409}' # _entry.id 7ZKA # _exptl.entry_id 7ZKA _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 486.726 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHOLESTEROL HEMISUCCINATE' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZKA _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZKA _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 H N N ? 6 I N N ? 6 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 978 A CYS 978 1_555 B S04 JIZ . A JIZ 1401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc1 A OG SER 430 A SER 430 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? metalc ? metalc2 A OE1 GLN 471 A GLN 471 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? metalc ? metalc3 A OG SER 1073 A SER 1073 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc4 A OE1 GLN 1114 A GLN 1114 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 C O1G ATP . A ATP 1402 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc6 C O2B ATP . A ATP 1402 1_555 D MG MG . A MG 1403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.144 ? metalc ? metalc7 D MG MG . A MG 1403 1_555 K O HOH . A HOH 1501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? metalc ? metalc8 D MG MG . A MG 1403 1_555 K O HOH . A HOH 1502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.12 ? metalc ? metalc9 E O2G ATP . A ATP 1404 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc10 E O2B ATP . A ATP 1404 1_555 F MG MG . A MG 1405 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc11 F MG MG . A MG 1405 1_555 K O HOH . A HOH 1503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc12 F MG MG . A MG 1405 1_555 K O HOH . A HOH 1504 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? # _chem_comp.formula 'C31 H50 O4' _chem_comp.formula_weight 486.726 _chem_comp.id Y01 _chem_comp.mon_nstd_flag . _chem_comp.name 'CHOLESTEROL HEMISUCCINATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CAA CBA Y01 sing 637 n n CBA CAB Y01 sing 638 n n CBA CAN Y01 sing 639 n n CAN CAJ Y01 sing 640 n n CAJ CAO Y01 sing 641 n n CAO CBB Y01 sing 642 n n CBB CAC Y01 sing 643 n n CBB CBE Y01 sing 644 n n CBE CAP Y01 sing 645 n n CBE CBI Y01 sing 646 n n CAP CAQ Y01 sing 647 n n CAQ CBG Y01 sing 648 n n CBG CBI Y01 sing 649 n n CBG CBD Y01 sing 650 n n CBI CAE Y01 sing 651 n n CBI CAU Y01 sing 652 n n CAU CAS Y01 sing 653 n n CAS CBF Y01 sing 654 n n CBF CBD Y01 sing 655 n n CBF CBH Y01 sing 656 n n CBD CAK Y01 sing 657 n n CAK CAI Y01 sing 658 n n CAI CAZ Y01 doub 659 n n CAZ CAV Y01 sing 660 n n CAZ CBH Y01 sing 661 n n CAV CBC Y01 sing 662 n n CBH CAD Y01 sing 663 n n CBH CAT Y01 sing 664 n n CAT CAR Y01 sing 665 n n CAR CBC Y01 sing 666 n n CBC OAW Y01 sing 667 n n OAW CAY Y01 sing 668 n n CAY OAG Y01 doub 669 n n CAY CAM Y01 sing 670 n n CAM CAL Y01 sing 671 n n CAL CAX Y01 sing 672 n n CAX OAH Y01 sing 673 n n CAX OAF Y01 doub 674 n n CAA HAA1 Y01 sing 675 n n CAA HAA2 Y01 sing 676 n n CAA HAA3 Y01 sing 677 n n CBA HBA Y01 sing 678 n n CAB HAB1 Y01 sing 679 n n CAB HAB2 Y01 sing 680 n n CAB HAB3 Y01 sing 681 n n CAN HAN1 Y01 sing 682 n n CAN HAN2 Y01 sing 683 n n CAJ HAJ1 Y01 sing 684 n n CAJ HAJ2 Y01 sing 685 n n CAO HAO1 Y01 sing 686 n n CAO HAO2 Y01 sing 687 n n CBB HBB Y01 sing 688 n n CAC HAC1 Y01 sing 689 n n CAC HAC2 Y01 sing 690 n n CAC HAC3 Y01 sing 691 n n CBE HBE Y01 sing 692 n n CAP HAP1 Y01 sing 693 n n CAP HAP2 Y01 sing 694 n n CAQ HAQ1 Y01 sing 695 n n CAQ HAQ2 Y01 sing 696 n n CBG HBG Y01 sing 697 n n CBD HBD Y01 sing 698 n n CAE HAE1 Y01 sing 699 n n CAE HAE2 Y01 sing 700 n n CAE HAE3 Y01 sing 701 n n CAU HAU1 Y01 sing 702 n n CAU HAU2 Y01 sing 703 n n CAS HAS1 Y01 sing 704 n n CAS HAS2 Y01 sing 705 n n CBF HBF Y01 sing 706 n n CAK HAK1 Y01 sing 707 n n CAK HAK2 Y01 sing 708 n n CAI HAI Y01 sing 709 n n CAV HAV1 Y01 sing 710 n n CAV HAV2 Y01 sing 711 n n CBC HBC Y01 sing 712 n n CAD HAD1 Y01 sing 713 n n CAD HAD2 Y01 sing 714 n n CAD HAD3 Y01 sing 715 n n CAT HAT1 Y01 sing 716 n n CAT HAT2 Y01 sing 717 n n CAR HAR1 Y01 sing 718 n n CAR HAR2 Y01 sing 719 n n CAM HAM1 Y01 sing 720 n n CAM HAM2 Y01 sing 721 n n CAL HAL1 Y01 sing 722 n n CAL HAL2 Y01 sing 723 n n OAH HAH Y01 sing 724 n n # _atom_sites.entry_id 7ZKA _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JIZ A 1 1401 2000 JIZ LIG . C 3 ATP A 1 1402 2001 ATP ATP . D 4 MG A 1 1403 2002 MG MG . E 3 ATP A 1 1404 2005 ATP ATP . F 4 MG A 1 1405 2006 MG MG . G 5 LMN A 1 1406 2010 LMN LMN . H 6 Y01 A 1 1407 2013 Y01 Y01 . I 6 Y01 A 1 1408 2014 Y01 Y01 . J 6 Y01 A 1 1409 2015 Y01 Y01 . K 7 HOH A 1 1501 2003 HOH HOH . K 7 HOH A 2 1502 2004 HOH HOH . K 7 HOH A 3 1503 2007 HOH HOH . K 7 HOH A 4 1504 2008 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CAA Y01 . . . J 6 134.028 122.196 129.544 1 0 ? CAA Y01 1409 A 1 HETATM 2 C CBA Y01 . . . J 6 135.407 122.295 130.173 1 0 ? CBA Y01 1409 A 1 HETATM 3 C CAB Y01 . . . J 6 135.751 123.75 130.447 1 0 ? CAB Y01 1409 A 1 HETATM 4 C CAN Y01 . . . J 6 136.463 121.643 129.285 1 0 ? CAN Y01 1409 A 1 HETATM 5 C CAJ Y01 . . . J 6 136.954 122.501 128.146 1 0 ? CAJ Y01 1409 A 1 HETATM 6 C CAO Y01 . . . J 6 137.592 121.712 127.032 1 0 ? CAO Y01 1409 A 1 HETATM 7 C CBB Y01 . . . J 6 136.614 120.979 126.102 1 0 ? CBB Y01 1409 A 1 HETATM 8 C CAC Y01 . . . J 6 135.449 121.9 125.745 1 0 ? CAC Y01 1409 A 1 HETATM 9 C CBE Y01 . . . J 6 137.372 120.475 124.86 1 0 ? CBE Y01 1409 A 1 HETATM 10 C CAP Y01 . . . J 6 138.81 119.999 125.198 1 0 ? CAP Y01 1409 A 1 HETATM 11 C CAQ Y01 . . . J 6 139.208 118.992 124.099 1 0 ? CAQ Y01 1409 A 1 HETATM 12 C CBG Y01 . . . J 6 138.043 119.054 123.115 1 0 ? CBG Y01 1409 A 1 HETATM 13 C CBI Y01 . . . J 6 136.815 119.291 124.017 1 0 ? CBI Y01 1409 A 1 HETATM 14 C CAE Y01 . . . J 6 136.519 118.088 124.929 1 0 ? CAE Y01 1409 A 1 HETATM 15 C CAU Y01 . . . J 6 135.625 119.594 123.102 1 0 ? CAU Y01 1409 A 1 HETATM 16 C CAS Y01 . . . J 6 135.416 118.496 122.054 1 0 ? CAS Y01 1409 A 1 HETATM 17 C CBF Y01 . . . J 6 136.664 118.247 121.195 1 0 ? CBF Y01 1409 A 1 HETATM 18 C CBD Y01 . . . J 6 137.899 117.957 122.069 1 0 ? CBD Y01 1409 A 1 HETATM 19 C CAK Y01 . . . J 6 139.155 117.886 121.204 1 0 ? CAK Y01 1409 A 1 HETATM 20 C CAI Y01 . . . J 6 138.922 117.244 119.874 1 0 ? CAI Y01 1409 A 1 HETATM 21 C CAZ Y01 . . . J 6 137.751 116.815 119.431 1 0 ? CAZ Y01 1409 A 1 HETATM 22 C CAV Y01 . . . J 6 137.648 115.978 118.175 1 0 ? CAV Y01 1409 A 1 HETATM 23 C CBH Y01 . . . J 6 136.43 117.165 120.105 1 0 ? CBH Y01 1409 A 1 HETATM 24 C CAD Y01 . . . J 6 135.839 115.873 120.695 1 0 ? CAD Y01 1409 A 1 HETATM 25 C CAT Y01 . . . J 6 135.474 117.729 119.029 1 0 ? CAT Y01 1409 A 1 HETATM 26 C CAR Y01 . . . J 6 135.379 116.854 117.777 1 0 ? CAR Y01 1409 A 1 HETATM 27 C CBC Y01 . . . J 6 136.735 116.63 117.164 1 0 ? CBC Y01 1409 A 1 HETATM 28 O OAW Y01 . . . J 6 136.631 115.719 116.025 1 0 ? OAW Y01 1409 A 1 HETATM 29 C CAY Y01 . . . J 6 136.244 116.189 114.833 1 0 ? CAY Y01 1409 A 1 HETATM 30 O OAG Y01 . . . J 6 135.303 116.91 114.667 1 0 ? OAG Y01 1409 A 1 HETATM 31 C CAM Y01 . . . J 6 137.143 115.707 113.72 1 0 ? CAM Y01 1409 A 1 HETATM 32 C CAL Y01 . . . J 6 136.762 116.049 112.285 1 0 ? CAL Y01 1409 A 1 HETATM 33 C CAX Y01 . . . J 6 137.866 115.845 111.263 1 0 ? CAX Y01 1409 A 1 HETATM 34 O OAH Y01 . . . J 6 137.616 116.097 110.067 1 0 ? OAH Y01 1409 A 1 HETATM 35 O OAF Y01 . . . J 6 138.973 115.436 111.664 1 0 ? OAF Y01 1409 A 1 # _model_server_stats.io_time_ms 26 _model_server_stats.parse_time_ms 20 _model_server_stats.create_model_time_ms 51 _model_server_stats.query_time_ms 374 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 35 #