data_7ZKG
#
_model_server_result.job_id            IAe3XxuxA_ezneVjWUnbLQ 
_model_server_result.datetime_utc      '2024-10-20 00:38:20' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zkg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"M","auth_seq_id":303}' 
#
_entry.id    7ZKG 
#
_exptl.entry_id    7ZKG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7ZKG 
_cell.length_a            138.71 
_cell.length_b            138.71 
_cell.length_c            162.06 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZKG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 I N N 
? 3 L N N 
? 3 M N N 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 237 n n 
C1 H11 MPD sing 238 n n 
C1 H12 MPD sing 239 n n 
C1 H13 MPD sing 240 n n 
C2 O2 MPD sing 241 n n 
C2 CM MPD sing 242 n n 
C2 C3 MPD sing 243 n n 
O2 HO2 MPD sing 244 n n 
CM HM1 MPD sing 245 n n 
CM HM2 MPD sing 246 n n 
CM HM3 MPD sing 247 n n 
C3 C4 MPD sing 248 n n 
C3 H31 MPD sing 249 n n 
C3 H32 MPD sing 250 n n 
C4 O4 MPD sing 251 n n 
C4 C5 MPD sing 252 n n 
C4 H4 MPD sing 253 n n 
O4 HO4 MPD sing 254 n n 
C5 H51 MPD sing 255 n n 
C5 H52 MPD sing 256 n n 
C5 H53 MPD sing 257 n n 
#
_atom_sites.entry_id                     7ZKG 
_atom_sites.fract_transf_matrix[1][1]    0.007209 
_atom_sites.fract_transf_matrix[1][2]    0.004162 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008325 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 301 311 PO4 PO4 . 
D 2 PO4 A 1 302 312 PO4 PO4 . 
E 2 PO4 A 1 303 313 PO4 PO4 . 
F 2 PO4 A 1 304 314 PO4 PO4 . 
G 2 PO4 A 1 305 315 PO4 PO4 . 
H 3 MPD A 1 306 321 MPD MPD . 
I 3 MPD A 1 307 322 MPD MPD . 
J 4 SAH A 1 308 301 SAH SAH . 
K 2 PO4 B 1 301 311 PO4 PO4 . 
L 3 MPD B 1 302 321 MPD MPD . 
M 3 MPD B 1 303 322 MPD MPD . 
N 4 SAH B 1 304 301 SAH SAH . 
O 5 HOH A 1 401 44 HOH HOH . 
O 5 HOH A 2 402 79 HOH HOH . 
O 5 HOH A 3 403 69 HOH HOH . 
O 5 HOH A 4 404 72 HOH HOH . 
O 5 HOH A 5 405 86 HOH HOH . 
O 5 HOH A 6 406 4 HOH HOH . 
O 5 HOH A 7 407 68 HOH HOH . 
O 5 HOH A 8 408 2 HOH HOH . 
O 5 HOH A 9 409 73 HOH HOH . 
O 5 HOH A 10 410 15 HOH HOH . 
O 5 HOH A 11 411 56 HOH HOH . 
O 5 HOH A 12 412 1 HOH HOH . 
O 5 HOH A 13 413 24 HOH HOH . 
O 5 HOH A 14 414 74 HOH HOH . 
O 5 HOH A 15 415 22 HOH HOH . 
O 5 HOH A 16 416 81 HOH HOH . 
O 5 HOH A 17 417 9 HOH HOH . 
O 5 HOH A 18 418 21 HOH HOH . 
O 5 HOH A 19 419 85 HOH HOH . 
O 5 HOH A 20 420 19 HOH HOH . 
O 5 HOH A 21 421 20 HOH HOH . 
O 5 HOH A 22 422 14 HOH HOH . 
O 5 HOH A 23 423 57 HOH HOH . 
O 5 HOH A 24 424 29 HOH HOH . 
O 5 HOH A 25 425 5 HOH HOH . 
O 5 HOH A 26 426 51 HOH HOH . 
O 5 HOH A 27 427 12 HOH HOH . 
O 5 HOH A 28 428 13 HOH HOH . 
O 5 HOH A 29 429 7 HOH HOH . 
O 5 HOH A 30 430 41 HOH HOH . 
O 5 HOH A 31 431 83 HOH HOH . 
O 5 HOH A 32 432 23 HOH HOH . 
O 5 HOH A 33 433 54 HOH HOH . 
O 5 HOH A 34 434 46 HOH HOH . 
O 5 HOH A 35 435 16 HOH HOH . 
O 5 HOH A 36 436 10 HOH HOH . 
O 5 HOH A 37 437 75 HOH HOH . 
O 5 HOH A 38 438 34 HOH HOH . 
O 5 HOH A 39 439 11 HOH HOH . 
O 5 HOH A 40 440 38 HOH HOH . 
O 5 HOH A 41 441 3 HOH HOH . 
O 5 HOH A 42 442 35 HOH HOH . 
O 5 HOH A 43 443 25 HOH HOH . 
O 5 HOH A 44 444 6 HOH HOH . 
O 5 HOH A 45 445 31 HOH HOH . 
O 5 HOH A 46 446 52 HOH HOH . 
O 5 HOH A 47 447 36 HOH HOH . 
O 5 HOH A 48 448 30 HOH HOH . 
O 5 HOH A 49 449 61 HOH HOH . 
O 5 HOH A 50 450 71 HOH HOH . 
O 5 HOH A 51 451 59 HOH HOH . 
O 5 HOH A 52 452 58 HOH HOH . 
O 5 HOH A 53 453 80 HOH HOH . 
O 5 HOH A 54 454 65 HOH HOH . 
O 5 HOH A 55 455 55 HOH HOH . 
O 5 HOH A 56 456 37 HOH HOH . 
O 5 HOH A 57 457 66 HOH HOH . 
O 5 HOH A 58 458 48 HOH HOH . 
O 5 HOH A 59 459 62 HOH HOH . 
O 5 HOH A 60 460 49 HOH HOH . 
P 5 HOH B 1 401 63 HOH HOH . 
P 5 HOH B 2 402 64 HOH HOH . 
P 5 HOH B 3 403 78 HOH HOH . 
P 5 HOH B 4 404 43 HOH HOH . 
P 5 HOH B 5 405 42 HOH HOH . 
P 5 HOH B 6 406 67 HOH HOH . 
P 5 HOH B 7 407 28 HOH HOH . 
P 5 HOH B 8 408 47 HOH HOH . 
P 5 HOH B 9 409 27 HOH HOH . 
P 5 HOH B 10 410 76 HOH HOH . 
P 5 HOH B 11 411 39 HOH HOH . 
P 5 HOH B 12 412 18 HOH HOH . 
P 5 HOH B 13 413 32 HOH HOH . 
P 5 HOH B 14 414 26 HOH HOH . 
P 5 HOH B 15 415 50 HOH HOH . 
P 5 HOH B 16 416 77 HOH HOH . 
P 5 HOH B 17 417 53 HOH HOH . 
P 5 HOH B 18 418 60 HOH HOH . 
P 5 HOH B 19 419 17 HOH HOH . 
P 5 HOH B 20 420 8 HOH HOH . 
P 5 HOH B 21 421 33 HOH HOH . 
P 5 HOH B 22 422 70 HOH HOH . 
P 5 HOH B 23 423 82 HOH HOH . 
P 5 HOH B 24 424 40 HOH HOH . 
P 5 HOH B 25 425 45 HOH HOH . 
P 5 HOH B 26 426 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . M 3 6.049 34.486 80.504 1 86.72 ? C1 MPD 303 B 1 
HETATM 2 C C2 MPD . . . M 3 6.083 33.646 81.77 1 79.8 ? C2 MPD 303 B 1 
HETATM 3 O O2 MPD . . . M 3 5.457 34.401 82.82 1 99.23 ? O2 MPD 303 B 1 
HETATM 4 C CM MPD . . . M 3 7.515 33.368 82.198 1 63.84 ? CM MPD 303 B 1 
HETATM 5 C C3 MPD . . . M 3 5.299 32.344 81.588 1 83.4 ? C3 MPD 303 B 1 
HETATM 6 C C4 MPD . . . M 3 5.061 31.67 82.911 1 85.15 ? C4 MPD 303 B 1 
HETATM 7 O O4 MPD . . . M 3 4.156 32.467 83.671 1 89.25 ? O4 MPD 303 B 1 
HETATM 8 C C5 MPD . . . M 3 4.527 30.273 82.785 1 72.51 ? C5 MPD 303 B 1 
#
_model_server_stats.io_time_ms              17 
_model_server_stats.parse_time_ms           38 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           262 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           8 
#