data_7ZKG
#
_model_server_result.job_id            G2xtutbawzmo74n-IyPS2g 
_model_server_result.datetime_utc      '2024-10-20 00:51:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zkg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":308}' 
#
_entry.id    7ZKG 
#
_exptl.entry_id    7ZKG 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              384.411 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            S-ADENOSYL-L-HOMOCYSTEINE 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            7ZKG 
_cell.length_a            138.71 
_cell.length_b            138.71 
_cell.length_c            162.06 
_cell.Z_PDB               24 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZKG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        178 
_symmetry.space_group_name_Hall    'P 61 2 (x,y,z+5/12)' 
_symmetry.space_group_name_H-M     'P 61 2 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 J N N 
? 4 N N N 
#
_chem_comp.formula           'C14 H20 N6 O5 S' 
_chem_comp.formula_weight    384.411 
_chem_comp.id                SAH 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              S-ADENOSYL-L-HOMOCYSTEINE 
_chem_comp.type              'l-peptide linking' 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA SAH sing 302 n n 
N HN1 SAH sing 303 n n 
N HN2 SAH sing 304 n n 
CA CB SAH sing 305 n n 
CA C SAH sing 306 n n 
CA HA SAH sing 307 n n 
CB CG SAH sing 308 n n 
CB HB1 SAH sing 309 n n 
CB HB2 SAH sing 310 n n 
CG SD SAH sing 311 n n 
CG HG1 SAH sing 312 n n 
CG HG2 SAH sing 313 n n 
SD C5' SAH sing 314 n n 
C O SAH doub 315 n n 
C OXT SAH sing 316 n n 
OXT HXT SAH sing 317 n n 
C5' C4' SAH sing 318 n n 
C5' "H5'1" SAH sing 319 n n 
C5' "H5'2" SAH sing 320 n n 
C4' O4' SAH sing 321 n n 
C4' C3' SAH sing 322 n n 
C4' H4' SAH sing 323 n n 
O4' C1' SAH sing 324 n n 
C3' O3' SAH sing 325 n n 
C3' C2' SAH sing 326 n n 
C3' H3' SAH sing 327 n n 
O3' HO3' SAH sing 328 n n 
C2' O2' SAH sing 329 n n 
C2' C1' SAH sing 330 n n 
C2' H2' SAH sing 331 n n 
O2' HO2' SAH sing 332 n n 
C1' N9 SAH sing 333 n n 
C1' H1' SAH sing 334 n n 
N9 C8 SAH sing 335 n y 
N9 C4 SAH sing 336 n y 
C8 N7 SAH doub 337 n y 
C8 H8 SAH sing 338 n n 
N7 C5 SAH sing 339 n y 
C5 C6 SAH sing 340 n y 
C5 C4 SAH doub 341 n y 
C6 N6 SAH sing 342 n n 
C6 N1 SAH doub 343 n y 
N6 HN61 SAH sing 344 n n 
N6 HN62 SAH sing 345 n n 
N1 C2 SAH sing 346 n y 
C2 N3 SAH doub 347 n y 
C2 H2 SAH sing 348 n n 
N3 C4 SAH sing 349 n y 
#
_atom_sites.entry_id                     7ZKG 
_atom_sites.fract_transf_matrix[1][1]    0.007209 
_atom_sites.fract_transf_matrix[1][2]    0.004162 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008325 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006171 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 PO4 A 1 301 311 PO4 PO4 . 
D 2 PO4 A 1 302 312 PO4 PO4 . 
E 2 PO4 A 1 303 313 PO4 PO4 . 
F 2 PO4 A 1 304 314 PO4 PO4 . 
G 2 PO4 A 1 305 315 PO4 PO4 . 
H 3 MPD A 1 306 321 MPD MPD . 
I 3 MPD A 1 307 322 MPD MPD . 
J 4 SAH A 1 308 301 SAH SAH . 
K 2 PO4 B 1 301 311 PO4 PO4 . 
L 3 MPD B 1 302 321 MPD MPD . 
M 3 MPD B 1 303 322 MPD MPD . 
N 4 SAH B 1 304 301 SAH SAH . 
O 5 HOH A 1 401 44 HOH HOH . 
O 5 HOH A 2 402 79 HOH HOH . 
O 5 HOH A 3 403 69 HOH HOH . 
O 5 HOH A 4 404 72 HOH HOH . 
O 5 HOH A 5 405 86 HOH HOH . 
O 5 HOH A 6 406 4 HOH HOH . 
O 5 HOH A 7 407 68 HOH HOH . 
O 5 HOH A 8 408 2 HOH HOH . 
O 5 HOH A 9 409 73 HOH HOH . 
O 5 HOH A 10 410 15 HOH HOH . 
O 5 HOH A 11 411 56 HOH HOH . 
O 5 HOH A 12 412 1 HOH HOH . 
O 5 HOH A 13 413 24 HOH HOH . 
O 5 HOH A 14 414 74 HOH HOH . 
O 5 HOH A 15 415 22 HOH HOH . 
O 5 HOH A 16 416 81 HOH HOH . 
O 5 HOH A 17 417 9 HOH HOH . 
O 5 HOH A 18 418 21 HOH HOH . 
O 5 HOH A 19 419 85 HOH HOH . 
O 5 HOH A 20 420 19 HOH HOH . 
O 5 HOH A 21 421 20 HOH HOH . 
O 5 HOH A 22 422 14 HOH HOH . 
O 5 HOH A 23 423 57 HOH HOH . 
O 5 HOH A 24 424 29 HOH HOH . 
O 5 HOH A 25 425 5 HOH HOH . 
O 5 HOH A 26 426 51 HOH HOH . 
O 5 HOH A 27 427 12 HOH HOH . 
O 5 HOH A 28 428 13 HOH HOH . 
O 5 HOH A 29 429 7 HOH HOH . 
O 5 HOH A 30 430 41 HOH HOH . 
O 5 HOH A 31 431 83 HOH HOH . 
O 5 HOH A 32 432 23 HOH HOH . 
O 5 HOH A 33 433 54 HOH HOH . 
O 5 HOH A 34 434 46 HOH HOH . 
O 5 HOH A 35 435 16 HOH HOH . 
O 5 HOH A 36 436 10 HOH HOH . 
O 5 HOH A 37 437 75 HOH HOH . 
O 5 HOH A 38 438 34 HOH HOH . 
O 5 HOH A 39 439 11 HOH HOH . 
O 5 HOH A 40 440 38 HOH HOH . 
O 5 HOH A 41 441 3 HOH HOH . 
O 5 HOH A 42 442 35 HOH HOH . 
O 5 HOH A 43 443 25 HOH HOH . 
O 5 HOH A 44 444 6 HOH HOH . 
O 5 HOH A 45 445 31 HOH HOH . 
O 5 HOH A 46 446 52 HOH HOH . 
O 5 HOH A 47 447 36 HOH HOH . 
O 5 HOH A 48 448 30 HOH HOH . 
O 5 HOH A 49 449 61 HOH HOH . 
O 5 HOH A 50 450 71 HOH HOH . 
O 5 HOH A 51 451 59 HOH HOH . 
O 5 HOH A 52 452 58 HOH HOH . 
O 5 HOH A 53 453 80 HOH HOH . 
O 5 HOH A 54 454 65 HOH HOH . 
O 5 HOH A 55 455 55 HOH HOH . 
O 5 HOH A 56 456 37 HOH HOH . 
O 5 HOH A 57 457 66 HOH HOH . 
O 5 HOH A 58 458 48 HOH HOH . 
O 5 HOH A 59 459 62 HOH HOH . 
O 5 HOH A 60 460 49 HOH HOH . 
P 5 HOH B 1 401 63 HOH HOH . 
P 5 HOH B 2 402 64 HOH HOH . 
P 5 HOH B 3 403 78 HOH HOH . 
P 5 HOH B 4 404 43 HOH HOH . 
P 5 HOH B 5 405 42 HOH HOH . 
P 5 HOH B 6 406 67 HOH HOH . 
P 5 HOH B 7 407 28 HOH HOH . 
P 5 HOH B 8 408 47 HOH HOH . 
P 5 HOH B 9 409 27 HOH HOH . 
P 5 HOH B 10 410 76 HOH HOH . 
P 5 HOH B 11 411 39 HOH HOH . 
P 5 HOH B 12 412 18 HOH HOH . 
P 5 HOH B 13 413 32 HOH HOH . 
P 5 HOH B 14 414 26 HOH HOH . 
P 5 HOH B 15 415 50 HOH HOH . 
P 5 HOH B 16 416 77 HOH HOH . 
P 5 HOH B 17 417 53 HOH HOH . 
P 5 HOH B 18 418 60 HOH HOH . 
P 5 HOH B 19 419 17 HOH HOH . 
P 5 HOH B 20 420 8 HOH HOH . 
P 5 HOH B 21 421 33 HOH HOH . 
P 5 HOH B 22 422 70 HOH HOH . 
P 5 HOH B 23 423 82 HOH HOH . 
P 5 HOH B 24 424 40 HOH HOH . 
P 5 HOH B 25 425 45 HOH HOH . 
P 5 HOH B 26 426 84 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N SAH . . . J 4 15.814 61.659 55.704 0.91 58.66 ? N SAH 308 A 1 
HETATM 2 C CA SAH . . . J 4 16.206 60.537 56.577 0.91 77.48 ? CA SAH 308 A 1 
HETATM 3 C CB SAH . . . J 4 15.505 60.588 57.936 0.91 63.26 ? CB SAH 308 A 1 
HETATM 4 C CG SAH . . . J 4 15.896 61.785 58.79 0.91 73.65 ? CG SAH 308 A 1 
HETATM 5 S SD SAH . . . J 4 14.67 62.274 60.036 0.91 82.3 ? SD SAH 308 A 1 
HETATM 6 C C SAH . . . J 4 15.911 59.208 55.896 0.91 75.87 ? C SAH 308 A 1 
HETATM 7 O O SAH . . . J 4 16.128 58.138 56.423 0.91 65.43 ? O SAH 308 A 1 
HETATM 8 O OXT SAH . . . J 4 15.399 59.351 54.701 0.91 61.14 ? OXT SAH 308 A 1 
HETATM 9 C C5' SAH . . . J 4 15.698 62.623 61.486 0.91 65.28 ? C5' SAH 308 A 1 
HETATM 10 C C4' SAH . . . J 4 16.803 63.585 61.093 0.91 59.3 ? C4' SAH 308 A 1 
HETATM 11 O O4' SAH . . . J 4 16.286 64.924 60.922 0.91 54.44 ? O4' SAH 308 A 1 
HETATM 12 C C3' SAH . . . J 4 17.918 63.673 62.144 0.91 52.67 ? C3' SAH 308 A 1 
HETATM 13 O O3' SAH . . . J 4 19.2 63.564 61.537 0.91 56.16 ? O3' SAH 308 A 1 
HETATM 14 C C2' SAH . . . J 4 17.702 65.051 62.778 0.91 46.6 ? C2' SAH 308 A 1 
HETATM 15 O O2' SAH . . . J 4 18.931 65.633 63.198 0.91 50.24 ? O2' SAH 308 A 1 
HETATM 16 C C1' SAH . . . J 4 17.122 65.834 61.606 0.91 56.54 ? C1' SAH 308 A 1 
HETATM 17 N N9 SAH . . . J 4 16.328 66.993 61.996 0.91 55.19 ? N9 SAH 308 A 1 
HETATM 18 C C8 SAH . . . J 4 15.191 66.999 62.763 0.91 58.72 ? C8 SAH 308 A 1 
HETATM 19 N N7 SAH . . . J 4 14.692 68.192 62.971 0.91 55.05 ? N7 SAH 308 A 1 
HETATM 20 C C5 SAH . . . J 4 15.559 69.034 62.294 0.91 52.33 ? C5 SAH 308 A 1 
HETATM 21 C C6 SAH . . . J 4 15.589 70.433 62.124 0.91 56.44 ? C6 SAH 308 A 1 
HETATM 22 N N6 SAH . . . J 4 14.691 71.267 62.659 0.91 44.7 ? N6 SAH 308 A 1 
HETATM 23 N N1 SAH . . . J 4 16.592 70.955 61.386 0.91 53.51 ? N1 SAH 308 A 1 
HETATM 24 C C2 SAH . . . J 4 17.5 70.128 60.858 0.91 55.64 ? C2 SAH 308 A 1 
HETATM 25 N N3 SAH . . . J 4 17.575 68.799 60.952 0.91 52.51 ? N3 SAH 308 A 1 
HETATM 26 C C4 SAH . . . J 4 16.571 68.311 61.686 0.91 55.35 ? C4 SAH 308 A 1 
#
_model_server_stats.io_time_ms              16 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           265 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           26 
#