data_7ZKM # _model_server_result.job_id Ll6yKAXPt8WRd8GQ6Hq8Kw _model_server_result.datetime_utc '2024-12-26 19:52:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zkm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":103}' # _entry.id 7ZKM # _exptl.entry_id 7ZKM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 39.098 _entity.id 9 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'POTASSIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZKM _cell.length_a 76.6 _cell.length_b 76.6 _cell.length_c 129.38 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZKM _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 9 J N N ? 9 M N N # _pdbx_entity_branch.entity_id 4 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 4 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 4 n E NAG 1 C 1 NAG H 303 NAG 4 n E NAG 2 C 2 NAG H 304 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 9 L CYS 1 1_555 B SG CYS 119 H CYS 122 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? disulf ? disulf2 B SG CYS 28 H CYS 42 1_555 B SG CYS 44 H CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.068 ? disulf ? disulf3 B SG CYS 173 H CYS 168 1_555 B SG CYS 187 H CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf4 B SG CYS 201 H CYS 191 1_555 B SG CYS 231 H CYS 220 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? covale ? covale1 B NE2 HIS 43 H HIS 57 1_555 F C3 0G6 . H 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.498 ? covale ? covale2 B ND2 ASN 53 H ASN 60 1_555 E C1 NAG . C NAG 1 1_555 G ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale3 B OG SER 205 H SER 195 1_555 F C2 0G6 . H 0G6 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.415 ? covale ? covale4 C P DG 1 A DG 1 1_555 H O18 JL0 . A JL0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.63 ? covale ? covale5 C O3' DG 15 A DG 15 1_555 I P1 JKR . A JKR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.619 ? covale ? covale6 D P DG 1 B DG 1 1_555 K O18 JL0 . B JL0 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.604 ? covale ? covale7 D O3' DG 15 B DG 15 1_555 L P1 JKR . B JKR 102 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.638 ? covale ? covale8 E O4 NAG . C NAG 1 1_555 E C1 NAG . C NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.454 ? metalc ? metalc1 B O ARG 233 H ARG 221 1_555 G NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.208 ? metalc ? metalc2 B O LYS 236 H LYS 224 1_555 G NA NA . H NA 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.38 ? metalc ? metalc3 G NA NA . H NA 302 1_555 O O HOH . H HOH 406 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 G NA NA . H NA 302 1_555 O O HOH . H HOH 421 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.433 ? metalc ? metalc5 G NA NA . H NA 302 1_555 O O HOH . H HOH 422 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.7 ? metalc ? metalc6 G NA NA . H NA 302 1_555 O O HOH . H HOH 426 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.585 ? metalc ? metalc7 C O6 DG 1 A DG 1 1_555 J K K . A K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.046 ? metalc ? metalc8 C O6 DG 2 A DG 2 1_555 J K K . A K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.997 ? metalc ? metalc9 C O6 DG 5 A DG 5 1_555 J K K . A K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.806 ? metalc ? metalc10 C O6 DG 11 A DG 11 1_555 J K K . A K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.884 ? metalc ? metalc11 C O6 DG 14 A DG 14 1_555 J K K . A K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.831 ? metalc ? metalc12 C O6 DG 15 A DG 15 1_555 J K K . A K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.826 ? metalc ? metalc13 D O6 DG 1 B DG 1 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.853 ? metalc ? metalc14 D O6 DG 2 B DG 2 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc15 D O6 DG 5 B DG 5 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.861 ? metalc ? metalc16 D O6 DG 6 B DG 6 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.863 ? metalc ? metalc17 D O6 DG 10 B DG 10 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.799 ? metalc ? metalc18 D O6 DG 11 B DG 11 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.871 ? metalc ? metalc19 D O6 DG 14 B DG 14 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.688 ? metalc ? metalc20 D O6 DG 15 B DG 15 1_555 M K K . B K 103 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? hydrog TYPE_6_PAIR hydrog1 C N1 DG 1 A DG 1 1_555 C O6 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog2 C N2 DG 1 A DG 1 1_555 C N7 DG 6 A DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog3 C N7 DG 1 A DG 1 1_555 C N2 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog4 C O6 DG 1 A DG 1 1_555 C N1 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog5 C N7 DG 2 A DG 2 1_555 C N2 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog6 C O6 DG 2 A DG 2 1_555 C N1 DG 5 A DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog7 C N1 DG 2 A DG 2 1_555 C O6 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog8 C N2 DG 2 A DG 2 1_555 C N7 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog9 C N7 DG 5 A DG 5 1_555 C N2 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog10 C O6 DG 5 A DG 5 1_555 C N1 DG 11 A DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog11 C N1 DG 6 A DG 6 1_555 C O6 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog12 C N2 DG 6 A DG 6 1_555 C N7 DG 10 A DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog13 C N1 DG 10 A DG 10 1_555 C O6 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog14 C N2 DG 10 A DG 10 1_555 C N7 DG 15 A DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'DG-DG MISPAIR' hydrog15 C N7 DG 11 A DG 11 1_555 C N2 DG 14 A DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog16 D N1 DG 1 B DG 1 1_555 D O6 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog17 D N2 DG 1 B DG 1 1_555 D N7 DG 6 B DG 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog18 D N7 DG 1 B DG 1 1_555 D N2 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog19 D O6 DG 1 B DG 1 1_555 D N1 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog20 D N7 DG 2 B DG 2 1_555 D N2 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog21 D O6 DG 2 B DG 2 1_555 D N1 DG 5 B DG 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog22 D N1 DG 2 B DG 2 1_555 D O6 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog23 D N2 DG 2 B DG 2 1_555 D N7 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog24 D N7 DG 5 B DG 5 1_555 D N2 DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog25 D O6 DG 5 B DG 5 1_555 D N1 DG 11 B DG 11 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog26 D N1 DG 6 B DG 6 1_555 D O6 DG 10 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog27 D N2 DG 6 B DG 6 1_555 D N7 DG 10 B DG 10 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog28 D N1 DG 10 B DG 10 1_555 D O6 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog29 D N2 DG 10 B DG 10 1_555 D N7 DG 15 B DG 15 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog30 D N7 DG 11 B DG 11 1_555 D N2 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog TYPE_6_PAIR hydrog31 D O6 DG 11 B DG 11 1_555 D N1 DG 14 B DG 14 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'K 1' _chem_comp.formula_weight 39.098 _chem_comp.id K _chem_comp.mon_nstd_flag . _chem_comp.name 'POTASSIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZKM _atom_sites.fract_transf_matrix[1][1] 0.013055 _atom_sites.fract_transf_matrix[1][2] 0.007537 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015074 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007729 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code F 5 0G6 H 1 301 301 0G6 0G6 . G 6 NA H 1 302 302 NA NA . H 7 JL0 A 1 101 101 JL0 5NN . I 8 JKR A 1 102 102 JKR 3DD . J 9 K A 1 103 103 K K . K 7 JL0 B 1 101 101 JL0 5NN . L 8 JKR B 1 102 102 JKR 3DD . M 9 K B 1 103 103 K K . N 10 HOH L 1 101 102 HOH HOH . N 10 HOH L 2 102 103 HOH HOH . N 10 HOH L 3 103 101 HOH HOH . O 10 HOH H 1 401 439 HOH HOH . O 10 HOH H 2 402 423 HOH HOH . O 10 HOH H 3 403 428 HOH HOH . O 10 HOH H 4 404 422 HOH HOH . O 10 HOH H 5 405 431 HOH HOH . O 10 HOH H 6 406 411 HOH HOH . O 10 HOH H 7 407 433 HOH HOH . O 10 HOH H 8 408 426 HOH HOH . O 10 HOH H 9 409 430 HOH HOH . O 10 HOH H 10 410 425 HOH HOH . O 10 HOH H 11 411 436 HOH HOH . O 10 HOH H 12 412 421 HOH HOH . O 10 HOH H 13 413 401 HOH HOH . O 10 HOH H 14 414 412 HOH HOH . O 10 HOH H 15 415 429 HOH HOH . O 10 HOH H 16 416 420 HOH HOH . O 10 HOH H 17 417 403 HOH HOH . O 10 HOH H 18 418 410 HOH HOH . O 10 HOH H 19 419 435 HOH HOH . O 10 HOH H 20 420 432 HOH HOH . O 10 HOH H 21 421 405 HOH HOH . O 10 HOH H 22 422 424 HOH HOH . O 10 HOH H 23 423 416 HOH HOH . O 10 HOH H 24 424 406 HOH HOH . O 10 HOH H 25 425 437 HOH HOH . O 10 HOH H 26 426 404 HOH HOH . O 10 HOH H 27 427 417 HOH HOH . O 10 HOH H 28 428 409 HOH HOH . O 10 HOH H 29 429 419 HOH HOH . O 10 HOH H 30 430 414 HOH HOH . O 10 HOH H 31 431 402 HOH HOH . O 10 HOH H 32 432 413 HOH HOH . O 10 HOH H 33 433 427 HOH HOH . O 10 HOH H 34 434 418 HOH HOH . O 10 HOH H 35 435 438 HOH HOH . O 10 HOH H 36 436 407 HOH HOH . O 10 HOH H 37 437 434 HOH HOH . O 10 HOH H 38 438 408 HOH HOH . O 10 HOH H 39 439 415 HOH HOH . P 10 HOH A 1 201 201 HOH HOH . Q 10 HOH B 1 201 201 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol K _atom_site.label_atom_id K _atom_site.label_comp_id K _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id J _atom_site.label_entity_id 9 _atom_site.Cartn_x -22.968 _atom_site.Cartn_y 25.289 _atom_site.Cartn_z 6.549 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 83.43 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id K _atom_site.auth_comp_id K _atom_site.auth_seq_id 103 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 314 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #