data_7ZKX # _model_server_result.job_id ubczHPHRdCtR4PbK8HROqQ _model_server_result.datetime_utc '2024-11-24 19:12:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zkx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":701}' # _entry.id 7ZKX # _exptl.entry_id 7ZKX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 461.9 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description N-[3-[[[2-(6-chloranyl-5-fluoranyl-1H-benzimidazol-2-yl)pyrimidin-4-yl]amino]methyl]pyridin-2-yl]-N-methyl-methanesulfonamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZKX _cell.length_a 107.755 _cell.length_b 107.755 _cell.length_c 90.228 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZKX _symmetry.cell_setting ? _symmetry.Int_Tables_number 152 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 31 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C19 H17 Cl F N7 O2 S' _chem_comp.formula_weight 461.9 _chem_comp.id IXQ _chem_comp.mon_nstd_flag . _chem_comp.name N-[3-[[[2-(6-chloranyl-5-fluoranyl-1H-benzimidazol-2-yl)pyrimidin-4-yl]amino]methyl]pyridin-2-yl]-N-methyl-methanesulfonamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms N-(3-{[2-(5-Chloro-6-fluoro-1H-benzoimidazol-2-yl)-pyrimidin-4-ylamino]-methyl}-pyridin-2-yl)-N-methyl-methanesulfonamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 N5 IXQ sing 188 n n O4 S2 IXQ doub 189 n n C13 N14 IXQ sing 190 n n C13 C12 IXQ sing 191 n n N5 S2 IXQ sing 192 n n N5 C7 IXQ sing 193 n n S2 C1 IXQ sing 194 n n S2 O3 IXQ doub 195 n n N14 C15 IXQ sing 196 n n C15 N16 IXQ doub 197 n y C15 C20 IXQ sing 198 n y C12 C7 IXQ doub 199 n y C12 C11 IXQ sing 200 n y N16 C17 IXQ sing 201 n y C7 N8 IXQ sing 202 n y C20 C19 IXQ doub 203 n y C17 C21 IXQ sing 204 n n C17 N18 IXQ doub 205 n y N31 C21 IXQ doub 206 n y N31 C30 IXQ sing 207 n y C19 N18 IXQ sing 208 n y C21 N22 IXQ sing 209 n y C29 C30 IXQ sing 210 n y C29 C27 IXQ doub 211 n y C30 C23 IXQ doub 212 n y C11 C10 IXQ doub 213 n y N8 C9 IXQ doub 214 n y N22 C23 IXQ sing 215 n y C27 F28 IXQ sing 216 n n C27 C25 IXQ sing 217 n y C23 C24 IXQ sing 218 n y C25 C24 IXQ doub 219 n y C25 CL26 IXQ sing 220 n n C9 C10 IXQ sing 221 n y C1 H1 IXQ sing 222 n n C1 H2 IXQ sing 223 n n C1 H3 IXQ sing 224 n n C6 H4 IXQ sing 225 n n C6 H5 IXQ sing 226 n n C6 H6 IXQ sing 227 n n C11 H7 IXQ sing 228 n n C19 H8 IXQ sing 229 n n N22 H9 IXQ sing 230 n n C24 H10 IXQ sing 231 n n C9 H11 IXQ sing 232 n n C10 H12 IXQ sing 233 n n C13 H13 IXQ sing 234 n n C13 H14 IXQ sing 235 n n N14 H15 IXQ sing 236 n n C20 H16 IXQ sing 237 n n C29 H17 IXQ sing 238 n n # _atom_sites.entry_id 7ZKX _atom_sites.fract_transf_matrix[1][1] 0.00928 _atom_sites.fract_transf_matrix[1][2] 0.005358 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010716 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011083 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 IXQ A 1 701 1 IXQ INX . C 3 SO4 A 1 702 1 SO4 SO4 . D 3 SO4 A 1 703 2 SO4 SO4 . E 3 SO4 A 1 704 3 SO4 SO4 . F 3 SO4 A 1 705 4 SO4 SO4 . G 4 EDO A 1 706 5 EDO EDO . H 5 NO3 A 1 707 6 NO3 NO3 . I 4 EDO A 1 708 7 EDO EDO . J 4 EDO A 1 709 8 EDO EDO . K 5 NO3 A 1 710 9 NO3 NO3 . L 6 ACT A 1 711 10 ACT ACT . M 3 SO4 A 1 712 11 SO4 SO4 . N 7 HOH A 1 801 78 HOH HOH . N 7 HOH A 2 802 92 HOH HOH . N 7 HOH A 3 803 136 HOH HOH . N 7 HOH A 4 804 12 HOH HOH . N 7 HOH A 5 805 118 HOH HOH . N 7 HOH A 6 806 82 HOH HOH . N 7 HOH A 7 807 51 HOH HOH . N 7 HOH A 8 808 40 HOH HOH . N 7 HOH A 9 809 100 HOH HOH . N 7 HOH A 10 810 107 HOH HOH . N 7 HOH A 11 811 57 HOH HOH . N 7 HOH A 12 812 81 HOH HOH . N 7 HOH A 13 813 104 HOH HOH . N 7 HOH A 14 814 140 HOH HOH . N 7 HOH A 15 815 93 HOH HOH . N 7 HOH A 16 816 31 HOH HOH . N 7 HOH A 17 817 62 HOH HOH . N 7 HOH A 18 818 106 HOH HOH . N 7 HOH A 19 819 5 HOH HOH . N 7 HOH A 20 820 111 HOH HOH . N 7 HOH A 21 821 83 HOH HOH . N 7 HOH A 22 822 84 HOH HOH . N 7 HOH A 23 823 109 HOH HOH . N 7 HOH A 24 824 55 HOH HOH . N 7 HOH A 25 825 42 HOH HOH . N 7 HOH A 26 826 130 HOH HOH . N 7 HOH A 27 827 30 HOH HOH . N 7 HOH A 28 828 27 HOH HOH . N 7 HOH A 29 829 10 HOH HOH . N 7 HOH A 30 830 36 HOH HOH . N 7 HOH A 31 831 139 HOH HOH . N 7 HOH A 32 832 76 HOH HOH . N 7 HOH A 33 833 35 HOH HOH . N 7 HOH A 34 834 24 HOH HOH . N 7 HOH A 35 835 71 HOH HOH . N 7 HOH A 36 836 13 HOH HOH . N 7 HOH A 37 837 145 HOH HOH . N 7 HOH A 38 838 39 HOH HOH . N 7 HOH A 39 839 77 HOH HOH . N 7 HOH A 40 840 108 HOH HOH . N 7 HOH A 41 841 115 HOH HOH . N 7 HOH A 42 842 114 HOH HOH . N 7 HOH A 43 843 44 HOH HOH . N 7 HOH A 44 844 80 HOH HOH . N 7 HOH A 45 845 66 HOH HOH . N 7 HOH A 46 846 3 HOH HOH . N 7 HOH A 47 847 85 HOH HOH . N 7 HOH A 48 848 116 HOH HOH . N 7 HOH A 49 849 41 HOH HOH . N 7 HOH A 50 850 20 HOH HOH . N 7 HOH A 51 851 90 HOH HOH . N 7 HOH A 52 852 17 HOH HOH . N 7 HOH A 53 853 22 HOH HOH . N 7 HOH A 54 854 45 HOH HOH . N 7 HOH A 55 855 43 HOH HOH . N 7 HOH A 56 856 29 HOH HOH . N 7 HOH A 57 857 75 HOH HOH . N 7 HOH A 58 858 49 HOH HOH . N 7 HOH A 59 859 68 HOH HOH . N 7 HOH A 60 860 110 HOH HOH . N 7 HOH A 61 861 1 HOH HOH . N 7 HOH A 62 862 113 HOH HOH . N 7 HOH A 63 863 33 HOH HOH . N 7 HOH A 64 864 2 HOH HOH . N 7 HOH A 65 865 56 HOH HOH . N 7 HOH A 66 866 50 HOH HOH . N 7 HOH A 67 867 19 HOH HOH . N 7 HOH A 68 868 61 HOH HOH . N 7 HOH A 69 869 91 HOH HOH . N 7 HOH A 70 870 26 HOH HOH . N 7 HOH A 71 871 46 HOH HOH . N 7 HOH A 72 872 21 HOH HOH . N 7 HOH A 73 873 105 HOH HOH . N 7 HOH A 74 874 69 HOH HOH . N 7 HOH A 75 875 16 HOH HOH . N 7 HOH A 76 876 134 HOH HOH . N 7 HOH A 77 877 8 HOH HOH . N 7 HOH A 78 878 141 HOH HOH . N 7 HOH A 79 879 132 HOH HOH . N 7 HOH A 80 880 15 HOH HOH . N 7 HOH A 81 881 32 HOH HOH . N 7 HOH A 82 882 47 HOH HOH . N 7 HOH A 83 883 89 HOH HOH . N 7 HOH A 84 884 121 HOH HOH . N 7 HOH A 85 885 120 HOH HOH . N 7 HOH A 86 886 70 HOH HOH . N 7 HOH A 87 887 127 HOH HOH . N 7 HOH A 88 888 97 HOH HOH . N 7 HOH A 89 889 99 HOH HOH . N 7 HOH A 90 890 95 HOH HOH . N 7 HOH A 91 891 59 HOH HOH . N 7 HOH A 92 892 147 HOH HOH . N 7 HOH A 93 893 98 HOH HOH . N 7 HOH A 94 894 129 HOH HOH . N 7 HOH A 95 895 9 HOH HOH . N 7 HOH A 96 896 60 HOH HOH . N 7 HOH A 97 897 126 HOH HOH . N 7 HOH A 98 898 87 HOH HOH . N 7 HOH A 99 899 25 HOH HOH . N 7 HOH A 100 900 14 HOH HOH . N 7 HOH A 101 901 64 HOH HOH . N 7 HOH A 102 902 131 HOH HOH . N 7 HOH A 103 903 86 HOH HOH . N 7 HOH A 104 904 123 HOH HOH . N 7 HOH A 105 905 128 HOH HOH . N 7 HOH A 106 906 135 HOH HOH . N 7 HOH A 107 907 124 HOH HOH . N 7 HOH A 108 908 137 HOH HOH . N 7 HOH A 109 909 28 HOH HOH . N 7 HOH A 110 910 146 HOH HOH . N 7 HOH A 111 911 96 HOH HOH . N 7 HOH A 112 912 53 HOH HOH . N 7 HOH A 113 913 138 HOH HOH . N 7 HOH A 114 914 150 HOH HOH . N 7 HOH A 115 915 94 HOH HOH . N 7 HOH A 116 916 144 HOH HOH . N 7 HOH A 117 917 112 HOH HOH . N 7 HOH A 118 918 117 HOH HOH . N 7 HOH A 119 919 119 HOH HOH . N 7 HOH A 120 920 74 HOH HOH . N 7 HOH A 121 921 11 HOH HOH . N 7 HOH A 122 922 52 HOH HOH . N 7 HOH A 123 923 103 HOH HOH . N 7 HOH A 124 924 125 HOH HOH . N 7 HOH A 125 925 88 HOH HOH . N 7 HOH A 126 926 142 HOH HOH . N 7 HOH A 127 927 143 HOH HOH . N 7 HOH A 128 928 65 HOH HOH . N 7 HOH A 129 929 133 HOH HOH . N 7 HOH A 130 930 148 HOH HOH . N 7 HOH A 131 931 149 HOH HOH . N 7 HOH A 132 932 101 HOH HOH . N 7 HOH A 133 933 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IXQ . . . B 2 -28.408 39.16 -14.512 1 67.53 ? C1 IXQ 701 A 1 HETATM 2 C C6 IXQ . . . B 2 -27.815 41.713 -12.1 1 65.33 ? C6 IXQ 701 A 1 HETATM 3 C C7 IXQ . . . B 2 -27.168 39.505 -11.216 1 67.32 ? C7 IXQ 701 A 1 HETATM 4 C C11 IXQ . . . B 2 -26.152 38.607 -9.209 1 65.59 ? C11 IXQ 701 A 1 HETATM 5 C C12 IXQ . . . B 2 -26.103 39.517 -10.279 1 71.7 ? C12 IXQ 701 A 1 HETATM 6 C C15 IXQ . . . B 2 -22.726 39.294 -10.419 1 55.32 ? C15 IXQ 701 A 1 HETATM 7 C C17 IXQ . . . B 2 -21.995 38.037 -12.246 1 62.33 ? C17 IXQ 701 A 1 HETATM 8 C C19 IXQ . . . B 2 -20.606 38.13 -10.418 1 63.93 ? C19 IXQ 701 A 1 HETATM 9 C C21 IXQ . . . B 2 -22.294 37.576 -13.61 1 63.85 ? C21 IXQ 701 A 1 HETATM 10 N N22 IXQ . . . B 2 -21.571 36.749 -14.315 1 60.32 ? N22 IXQ 701 A 1 HETATM 11 C C23 IXQ . . . B 2 -22.163 36.587 -15.514 1 78.39 ? C23 IXQ 701 A 1 HETATM 12 C C24 IXQ . . . B 2 -21.842 35.822 -16.647 1 73.49 ? C24 IXQ 701 A 1 HETATM 13 C C27 IXQ . . . B 2 -23.831 36.655 -17.776 1 80.24 ? C27 IXQ 701 A 1 HETATM 14 C C30 IXQ . . . B 2 -23.339 37.386 -15.534 1 76.15 ? C30 IXQ 701 A 1 HETATM 15 S S2 IXQ . . . B 2 -26.859 39.842 -13.848 1 70.73 ? S2 IXQ 701 A 1 HETATM 16 O O3 IXQ . . . B 2 -26.499 41.022 -14.551 1 78.79 ? O3 IXQ 701 A 1 HETATM 17 O O4 IXQ . . . B 2 -25.904 38.801 -13.693 1 59.37 ? O4 IXQ 701 A 1 HETATM 18 N N5 IXQ . . . B 2 -27.271 40.361 -12.315 1 73.31 ? N5 IXQ 701 A 1 HETATM 19 N N8 IXQ . . . B 2 -28.177 38.651 -11.079 1 76.94 ? N8 IXQ 701 A 1 HETATM 20 C C9 IXQ . . . B 2 -28.237 37.786 -10.086 1 68.38 ? C9 IXQ 701 A 1 HETATM 21 C C10 IXQ . . . B 2 -27.239 37.724 -9.116 1 73.49 ? C10 IXQ 701 A 1 HETATM 22 C C13 IXQ . . . B 2 -24.959 40.495 -10.441 1 61.27 ? C13 IXQ 701 A 1 HETATM 23 N N14 IXQ . . . B 2 -23.678 40.112 -9.815 1 51.76 ? N14 IXQ 701 A 1 HETATM 24 N N16 IXQ . . . B 2 -22.897 38.821 -11.659 1 54.38 ? N16 IXQ 701 A 1 HETATM 25 N N18 IXQ . . . B 2 -20.854 37.692 -11.644 1 57.9 ? N18 IXQ 701 A 1 HETATM 26 C C20 IXQ . . . B 2 -21.524 38.938 -9.769 1 52.59 ? C20 IXQ 701 A 1 HETATM 27 C C25 IXQ . . . B 2 -22.667 35.867 -17.747 1 80.32 ? C25 IXQ 701 A 1 HETATM 28 CL CL26 IXQ . . . B 2 -22.237 34.916 -19.112 1 93.06 ? CL26 IXQ 701 A 1 HETATM 29 F F28 IXQ . . . B 2 -24.621 36.675 -18.874 1 71 ? F28 IXQ 701 A 1 HETATM 30 C C29 IXQ . . . B 2 -24.167 37.418 -16.663 1 80.26 ? C29 IXQ 701 A 1 HETATM 31 N N31 IXQ . . . B 2 -23.385 38 -14.314 1 71.63 ? N31 IXQ 701 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 32 _model_server_stats.query_time_ms 257 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 31 #