data_7ZM2
#
_model_server_result.job_id            cWllCAeCZfyiJVHBqLIELA 
_model_server_result.datetime_utc      '2025-04-21 13:22:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zm2 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    7ZM2 
#
_exptl.entry_id    7ZM2 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              420.52 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'methoxy-[(3~{R})-3-[(2~{R})-1-methoxy-1,3-bis(oxidanylidene)butan-2-yl]pentadecyl]phosphinic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZM2 
_cell.length_a            76.834 
_cell.length_b            87.187 
_cell.length_c            105.914 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZM2 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        17 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 2 2 21' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,D,E,F,J 1 1,3 
B,G,H,I,K 1 2,4 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_775 -x+2,-y+2,z+1/2 -1 0 0 0 -1 0 0 0 1 153.668 174.374 52.957 
3 'crystal symmetry operation' 3_756 -x+2,y,-z+3/2 -1 0 0 0 1 0 0 0 -1 153.668 0 158.871 
4 'crystal symmetry operation' 4_576 x,-y+2,-z+1 1 0 0 0 -1 0 0 0 -1 0 174.374 105.914 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 G N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A OG SER 114 A SER 114 1_555 C P01 9SW . A 9SW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.618 ? 
covale ? covale2 B OG SER 114 B SER 114 1_555 G P01 9SW . B 9SW 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.578 ? 
#
_chem_comp.formula           'C21 H41 O6 P' 
_chem_comp.formula_weight    420.52 
_chem_comp.id                9SW 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'methoxy-[(3~{R})-3-[(2~{R})-1-methoxy-1,3-bis(oxidanylidene)butan-2-yl]pentadecyl]phosphinic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O07 P01 9SW doub 1 n n 
C15 O05 9SW sing 2 n n 
O05 P01 9SW sing 3 n n 
O17 P01 9SW sing 4 n n 
P01 C03 9SW sing 5 n n 
C03 C11 9SW sing 6 n n 
C14 C12 9SW sing 7 n n 
C11 C08 9SW sing 8 n n 
C12 O04 9SW doub 9 n n 
C12 C09 9SW sing 10 n n 
C08 C09 9SW sing 11 n n 
C08 C10 9SW sing 12 n n 
C09 C13 9SW sing 13 n n 
C18 C10 9SW sing 14 n n 
C18 C19 9SW sing 15 n n 
C13 O02 9SW sing 16 n n 
C13 O06 9SW doub 17 n n 
O02 C16 9SW sing 18 n n 
C19 C20 9SW sing 19 n n 
C20 C21 9SW sing 20 n n 
C21 C22 9SW sing 21 n n 
C22 C23 9SW sing 22 n n 
C23 C24 9SW sing 23 n n 
C24 C25 9SW sing 24 n n 
C25 C26 9SW sing 25 n n 
C26 C27 9SW sing 26 n n 
C27 C28 9SW sing 27 n n 
C10 H1 9SW sing 28 n n 
C10 H2 9SW sing 29 n n 
C15 H3 9SW sing 30 n n 
C15 H4 9SW sing 31 n n 
C15 H5 9SW sing 32 n n 
C20 H6 9SW sing 33 n n 
C20 H7 9SW sing 34 n n 
C21 H8 9SW sing 35 n n 
C21 H9 9SW sing 36 n n 
C22 H10 9SW sing 37 n n 
C22 H11 9SW sing 38 n n 
C24 H12 9SW sing 39 n n 
C24 H13 9SW sing 40 n n 
C26 H14 9SW sing 41 n n 
C26 H15 9SW sing 42 n n 
C28 H16 9SW sing 43 n n 
C28 H17 9SW sing 44 n n 
C28 H18 9SW sing 45 n n 
C03 H19 9SW sing 46 n n 
C08 H20 9SW sing 47 n n 
C09 H21 9SW sing 48 n n 
C11 H22 9SW sing 49 n n 
C14 H23 9SW sing 50 n n 
C14 H24 9SW sing 51 n n 
C14 H25 9SW sing 52 n n 
C16 H26 9SW sing 53 n n 
C16 H27 9SW sing 54 n n 
C16 H28 9SW sing 55 n n 
C18 H29 9SW sing 56 n n 
C18 H30 9SW sing 57 n n 
C19 H31 9SW sing 58 n n 
C19 H32 9SW sing 59 n n 
C23 H33 9SW sing 60 n n 
C23 H34 9SW sing 61 n n 
C25 H35 9SW sing 62 n n 
C25 H36 9SW sing 63 n n 
C27 H37 9SW sing 64 n n 
C27 H38 9SW sing 65 n n 
O17 H39 9SW sing 66 n n 
C03 H40 9SW sing 67 n n 
C11 H41 9SW sing 68 n n 
#
_atom_sites.entry_id                     7ZM2 
_atom_sites.fract_transf_matrix[1][1]    0.013015 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01147 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.009442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 9SW A 1 301 301 9SW 9SW . 
D 3 SO4 A 1 302 1 SO4 SO4 . 
E 3 SO4 A 1 303 2 SO4 SO4 . 
F 3 SO4 A 1 304 4 SO4 SO4 . 
G 2 9SW B 1 301 301 9SW 9SW . 
H 3 SO4 B 1 302 3 SO4 SO4 . 
I 3 SO4 B 1 303 5 SO4 SO4 . 
J 4 HOH A 1 401 82 HOH HOH . 
J 4 HOH A 2 402 45 HOH HOH . 
J 4 HOH A 3 403 32 HOH HOH . 
J 4 HOH A 4 404 40 HOH HOH . 
J 4 HOH A 5 405 79 HOH HOH . 
J 4 HOH A 6 406 100 HOH HOH . 
J 4 HOH A 7 407 119 HOH HOH . 
J 4 HOH A 8 408 47 HOH HOH . 
J 4 HOH A 9 409 71 HOH HOH . 
J 4 HOH A 10 410 39 HOH HOH . 
J 4 HOH A 11 411 22 HOH HOH . 
J 4 HOH A 12 412 105 HOH HOH . 
J 4 HOH A 13 413 21 HOH HOH . 
J 4 HOH A 14 414 18 HOH HOH . 
J 4 HOH A 15 415 55 HOH HOH . 
J 4 HOH A 16 416 56 HOH HOH . 
J 4 HOH A 17 417 15 HOH HOH . 
J 4 HOH A 18 418 43 HOH HOH . 
J 4 HOH A 19 419 27 HOH HOH . 
J 4 HOH A 20 420 23 HOH HOH . 
J 4 HOH A 21 421 57 HOH HOH . 
J 4 HOH A 22 422 76 HOH HOH . 
J 4 HOH A 23 423 17 HOH HOH . 
J 4 HOH A 24 424 50 HOH HOH . 
J 4 HOH A 25 425 30 HOH HOH . 
J 4 HOH A 26 426 25 HOH HOH . 
J 4 HOH A 27 427 75 HOH HOH . 
J 4 HOH A 28 428 98 HOH HOH . 
J 4 HOH A 29 429 38 HOH HOH . 
J 4 HOH A 30 430 117 HOH HOH . 
J 4 HOH A 31 431 49 HOH HOH . 
J 4 HOH A 32 432 34 HOH HOH . 
J 4 HOH A 33 433 74 HOH HOH . 
J 4 HOH A 34 434 46 HOH HOH . 
J 4 HOH A 35 435 101 HOH HOH . 
J 4 HOH A 36 436 54 HOH HOH . 
J 4 HOH A 37 437 53 HOH HOH . 
J 4 HOH A 38 438 14 HOH HOH . 
J 4 HOH A 39 439 6 HOH HOH . 
J 4 HOH A 40 440 80 HOH HOH . 
J 4 HOH A 41 441 66 HOH HOH . 
J 4 HOH A 42 442 44 HOH HOH . 
J 4 HOH A 43 443 113 HOH HOH . 
J 4 HOH A 44 444 51 HOH HOH . 
J 4 HOH A 45 445 48 HOH HOH . 
J 4 HOH A 46 446 24 HOH HOH . 
J 4 HOH A 47 447 7 HOH HOH . 
J 4 HOH A 48 448 58 HOH HOH . 
J 4 HOH A 49 449 12 HOH HOH . 
J 4 HOH A 50 450 9 HOH HOH . 
J 4 HOH A 51 451 68 HOH HOH . 
J 4 HOH A 52 452 62 HOH HOH . 
J 4 HOH A 53 453 2 HOH HOH . 
J 4 HOH A 54 454 85 HOH HOH . 
J 4 HOH A 55 455 73 HOH HOH . 
J 4 HOH A 56 456 29 HOH HOH . 
J 4 HOH A 57 457 87 HOH HOH . 
K 4 HOH B 1 401 35 HOH HOH . 
K 4 HOH B 2 402 41 HOH HOH . 
K 4 HOH B 3 403 60 HOH HOH . 
K 4 HOH B 4 404 94 HOH HOH . 
K 4 HOH B 5 405 77 HOH HOH . 
K 4 HOH B 6 406 111 HOH HOH . 
K 4 HOH B 7 407 36 HOH HOH . 
K 4 HOH B 8 408 106 HOH HOH . 
K 4 HOH B 9 409 83 HOH HOH . 
K 4 HOH B 10 410 115 HOH HOH . 
K 4 HOH B 11 411 93 HOH HOH . 
K 4 HOH B 12 412 61 HOH HOH . 
K 4 HOH B 13 413 97 HOH HOH . 
K 4 HOH B 14 414 95 HOH HOH . 
K 4 HOH B 15 415 42 HOH HOH . 
K 4 HOH B 16 416 52 HOH HOH . 
K 4 HOH B 17 417 110 HOH HOH . 
K 4 HOH B 18 418 20 HOH HOH . 
K 4 HOH B 19 419 109 HOH HOH . 
K 4 HOH B 20 420 28 HOH HOH . 
K 4 HOH B 21 421 72 HOH HOH . 
K 4 HOH B 22 422 104 HOH HOH . 
K 4 HOH B 23 423 103 HOH HOH . 
K 4 HOH B 24 424 96 HOH HOH . 
K 4 HOH B 25 425 19 HOH HOH . 
K 4 HOH B 26 426 31 HOH HOH . 
K 4 HOH B 27 427 90 HOH HOH . 
K 4 HOH B 28 428 16 HOH HOH . 
K 4 HOH B 29 429 112 HOH HOH . 
K 4 HOH B 30 430 99 HOH HOH . 
K 4 HOH B 31 431 102 HOH HOH . 
K 4 HOH B 32 432 91 HOH HOH . 
K 4 HOH B 33 433 11 HOH HOH . 
K 4 HOH B 34 434 114 HOH HOH . 
K 4 HOH B 35 435 13 HOH HOH . 
K 4 HOH B 36 436 8 HOH HOH . 
K 4 HOH B 37 437 64 HOH HOH . 
K 4 HOH B 38 438 118 HOH HOH . 
K 4 HOH B 39 439 81 HOH HOH . 
K 4 HOH B 40 440 26 HOH HOH . 
K 4 HOH B 41 441 33 HOH HOH . 
K 4 HOH B 42 442 107 HOH HOH . 
K 4 HOH B 43 443 108 HOH HOH . 
K 4 HOH B 44 444 69 HOH HOH . 
K 4 HOH B 45 445 59 HOH HOH . 
K 4 HOH B 46 446 92 HOH HOH . 
K 4 HOH B 47 447 86 HOH HOH . 
K 4 HOH B 48 448 84 HOH HOH . 
K 4 HOH B 49 449 63 HOH HOH . 
K 4 HOH B 50 450 70 HOH HOH . 
K 4 HOH B 51 451 65 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 9SW . . . C 2 97.338 83.077 75.074 1 62.09 ? C15 9SW 301 A 1 
HETATM 2 C C03 9SW . . . C 2 95.779 85.838 72.548 1 56.02 ? C03 9SW 301 A 1 
HETATM 3 O O05 9SW . . . C 2 96.382 84.082 74.669 1 67.22 ? O05 9SW 301 A 1 
HETATM 4 O O07 9SW . . . C 2 96.632 83.218 72.47 1 48.69 ? O07 9SW 301 A 1 
HETATM 5 P P01 9SW . . . C 2 95.67 84.106 73.238 1 71.67 ? P01 9SW 301 A 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           22 
_model_server_stats.create_model_time_ms    23 
_model_server_stats.query_time_ms           322 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           5 
#