data_7ZPB # _model_server_result.job_id Oxdr6dpapl_X3gZEjy2MIQ _model_server_result.datetime_utc '2024-11-27 20:56:59' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zpb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":606}' # _entry.id 7ZPB # _exptl.entry_id 7ZPB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 195.237 _entity.id 8 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZPB _cell.length_a 154.244 _cell.length_b 154.244 _cell.length_c 128.113 _cell.Z_PDB 16 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZPB _symmetry.cell_setting ? _symmetry.Int_Tables_number 97 _symmetry.space_group_name_Hall 'I 4 2' _symmetry.space_group_name_H-M 'I 4 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 8 _struct_asym.id L _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _pdbx_entity_branch.entity_id _pdbx_entity_branch.type 2 oligosaccharide 3 oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 1 FUC NAG C1 O1 . O6 HO6 . sing 3 ? 3 2 1 FUC NAG C1 O1 . O6 HO6 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 530 NAG 2 n B NAG 2 B 2 NAG A 531 NAG 2 n B FUC 3 B 3 FUC A 532 FUC 3 n C NAG 1 C 1 NAG A 533 NAG 3 n C FUC 2 C 2 FUC A 548 FUC 3 n D NAG 1 D 1 NAG A 534 NAG 3 n D FUC 2 D 2 FUC A 535 FUC 2 n E NAG 1 E 1 NAG A 537 NAG 2 n E NAG 2 E 2 NAG A 538 NAG 2 n E FUC 3 E 3 FUC A 539 FUC 3 n F NAG 1 F 1 NAG A 540 NAG 3 n F FUC 2 F 2 FUC A 541 FUC # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 65 A CYS 65 1_555 A SG CYS 92 A CYS 92 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 252 A CYS 252 1_555 A SG CYS 263 A CYS 263 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf3 A SG CYS 400 A CYS 400 1_555 A SG CYS 519 A CYS 519 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? covale ? covale1 A ND2 ASN 57 A ASN 57 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale2 A ND2 ASN 106 A ASN 106 1_555 C C1 NAG . C NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.464 ? covale ? covale3 A OG SER 198 A SER 198 1_555 J C02 JS0 . A JS0 604 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.424 ? covale ? covale4 A ND2 ASN 241 A ASN 241 1_555 D C1 NAG . D NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.462 ? covale ? covale5 A ND2 ASN 256 A ASN 256 1_555 G C1 NAG . A NAG 601 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.442 ? covale ? covale6 A ND2 ASN 341 A ASN 341 1_555 E C1 NAG . E NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.449 ? covale ? covale7 A ND2 ASN 485 A ASN 485 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.465 ? covale ? covale8 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.466 ? covale ? covale9 B O6 NAG . B NAG 1 1_555 B C1 FUC . B FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.447 ? covale ? covale10 C O6 NAG . C NAG 1 1_555 C C1 FUC . C FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.468 ? covale ? covale11 D O6 NAG . D NAG 1 1_555 D C1 FUC . D FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale12 E O4 NAG . E NAG 1 1_555 E C1 NAG . E NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale13 E O6 NAG . E NAG 1 1_555 E C1 FUC . E FUC 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale14 F O6 NAG . F NAG 1 1_555 F C1 FUC . F FUC 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? # _chem_comp.formula 'C6 H13 N O4 S' _chem_comp.formula_weight 195.237 _chem_comp.id MES _chem_comp.mon_nstd_flag . _chem_comp.name '2-(N-MORPHOLINO)-ETHANESULFONIC ACID' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 C2 MES sing 306 n n O1 C6 MES sing 307 n n C2 C3 MES sing 308 n n C2 H21 MES sing 309 n n C2 H22 MES sing 310 n n C3 N4 MES sing 311 n n C3 H31 MES sing 312 n n C3 H32 MES sing 313 n n N4 C5 MES sing 314 n n N4 C7 MES sing 315 n n N4 HN4 MES sing 316 n n C5 C6 MES sing 317 n n C5 H51 MES sing 318 n n C5 H52 MES sing 319 n n C6 H61 MES sing 320 n n C6 H62 MES sing 321 n n C7 C8 MES sing 322 n n C7 H71 MES sing 323 n n C7 H72 MES sing 324 n n C8 S MES sing 325 n n C8 H81 MES sing 326 n n C8 H82 MES sing 327 n n S O1S MES doub 328 n n S O2S MES doub 329 n n S O3S MES sing 330 n n # _atom_sites.entry_id 7ZPB _atom_sites.fract_transf_matrix[1][1] 0.006483 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006483 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007806 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAG A 1 601 536 NAG NAG . H 5 GOL A 1 602 542 GOL GOL . I 5 GOL A 1 603 543 GOL GOL . J 6 JS0 A 1 604 544 JS0 XB8 . K 7 SIA A 1 605 545 SIA SIA . L 8 MES A 1 606 546 MES MES . M 9 PPI A 1 607 547 PPI PPI . N 5 GOL A 1 608 549 GOL GOL . O 10 SO4 A 1 609 1 SO4 SO4 . P 10 SO4 A 1 610 2 SO4 SO4 . Q 10 SO4 A 1 611 3 SO4 SO4 . R 10 SO4 A 1 612 4 SO4 SO4 . S 10 SO4 A 1 613 5 SO4 SO4 . T 11 HOH A 1 701 91 HOH HOH . T 11 HOH A 2 702 94 HOH HOH . T 11 HOH A 3 703 109 HOH HOH . T 11 HOH A 4 704 106 HOH HOH . T 11 HOH A 5 705 64 HOH HOH . T 11 HOH A 6 706 97 HOH HOH . T 11 HOH A 7 707 11 HOH HOH . T 11 HOH A 8 708 68 HOH HOH . T 11 HOH A 9 709 107 HOH HOH . T 11 HOH A 10 710 38 HOH HOH . T 11 HOH A 11 711 26 HOH HOH . T 11 HOH A 12 712 23 HOH HOH . T 11 HOH A 13 713 25 HOH HOH . T 11 HOH A 14 714 82 HOH HOH . T 11 HOH A 15 715 101 HOH HOH . T 11 HOH A 16 716 31 HOH HOH . T 11 HOH A 17 717 83 HOH HOH . T 11 HOH A 18 718 98 HOH HOH . T 11 HOH A 19 719 72 HOH HOH . T 11 HOH A 20 720 41 HOH HOH . T 11 HOH A 21 721 52 HOH HOH . T 11 HOH A 22 722 92 HOH HOH . T 11 HOH A 23 723 4 HOH HOH . T 11 HOH A 24 724 6 HOH HOH . T 11 HOH A 25 725 20 HOH HOH . T 11 HOH A 26 726 37 HOH HOH . T 11 HOH A 27 727 85 HOH HOH . T 11 HOH A 28 728 39 HOH HOH . T 11 HOH A 29 729 89 HOH HOH . T 11 HOH A 30 730 69 HOH HOH . T 11 HOH A 31 731 27 HOH HOH . T 11 HOH A 32 732 58 HOH HOH . T 11 HOH A 33 733 40 HOH HOH . T 11 HOH A 34 734 15 HOH HOH . T 11 HOH A 35 735 44 HOH HOH . T 11 HOH A 36 736 66 HOH HOH . T 11 HOH A 37 737 60 HOH HOH . T 11 HOH A 38 738 5 HOH HOH . T 11 HOH A 39 739 22 HOH HOH . T 11 HOH A 40 740 87 HOH HOH . T 11 HOH A 41 741 42 HOH HOH . T 11 HOH A 42 742 65 HOH HOH . T 11 HOH A 43 743 28 HOH HOH . T 11 HOH A 44 744 90 HOH HOH . T 11 HOH A 45 745 24 HOH HOH . T 11 HOH A 46 746 18 HOH HOH . T 11 HOH A 47 747 9 HOH HOH . T 11 HOH A 48 748 12 HOH HOH . T 11 HOH A 49 749 100 HOH HOH . T 11 HOH A 50 750 36 HOH HOH . T 11 HOH A 51 751 35 HOH HOH . T 11 HOH A 52 752 19 HOH HOH . T 11 HOH A 53 753 32 HOH HOH . T 11 HOH A 54 754 50 HOH HOH . T 11 HOH A 55 755 3 HOH HOH . T 11 HOH A 56 756 62 HOH HOH . T 11 HOH A 57 757 59 HOH HOH . T 11 HOH A 58 758 84 HOH HOH . T 11 HOH A 59 759 29 HOH HOH . T 11 HOH A 60 760 54 HOH HOH . T 11 HOH A 61 761 14 HOH HOH . T 11 HOH A 62 762 56 HOH HOH . T 11 HOH A 63 763 1 HOH HOH . T 11 HOH A 64 764 71 HOH HOH . T 11 HOH A 65 765 70 HOH HOH . T 11 HOH A 66 766 49 HOH HOH . T 11 HOH A 67 767 16 HOH HOH . T 11 HOH A 68 768 47 HOH HOH . T 11 HOH A 69 769 30 HOH HOH . T 11 HOH A 70 770 88 HOH HOH . T 11 HOH A 71 771 63 HOH HOH . T 11 HOH A 72 772 33 HOH HOH . T 11 HOH A 73 773 43 HOH HOH . T 11 HOH A 74 774 55 HOH HOH . T 11 HOH A 75 775 7 HOH HOH . T 11 HOH A 76 776 2 HOH HOH . T 11 HOH A 77 777 10 HOH HOH . T 11 HOH A 78 778 95 HOH HOH . T 11 HOH A 79 779 53 HOH HOH . T 11 HOH A 80 780 104 HOH HOH . T 11 HOH A 81 781 99 HOH HOH . T 11 HOH A 82 782 78 HOH HOH . T 11 HOH A 83 783 93 HOH HOH . T 11 HOH A 84 784 74 HOH HOH . T 11 HOH A 85 785 111 HOH HOH . T 11 HOH A 86 786 103 HOH HOH . T 11 HOH A 87 787 13 HOH HOH . T 11 HOH A 88 788 76 HOH HOH . T 11 HOH A 89 789 46 HOH HOH . T 11 HOH A 90 790 67 HOH HOH . T 11 HOH A 91 791 79 HOH HOH . T 11 HOH A 92 792 105 HOH HOH . T 11 HOH A 93 793 34 HOH HOH . T 11 HOH A 94 794 45 HOH HOH . T 11 HOH A 95 795 51 HOH HOH . T 11 HOH A 96 796 17 HOH HOH . T 11 HOH A 97 797 8 HOH HOH . T 11 HOH A 98 798 110 HOH HOH . T 11 HOH A 99 799 77 HOH HOH . T 11 HOH A 100 800 73 HOH HOH . T 11 HOH A 101 801 102 HOH HOH . T 11 HOH A 102 802 80 HOH HOH . T 11 HOH A 103 803 96 HOH HOH . T 11 HOH A 104 804 75 HOH HOH . T 11 HOH A 105 805 81 HOH HOH . T 11 HOH A 106 806 86 HOH HOH . T 11 HOH A 107 807 21 HOH HOH . T 11 HOH A 108 808 114 HOH HOH . T 11 HOH A 109 809 108 HOH HOH . T 11 HOH A 110 810 113 HOH HOH . T 11 HOH A 111 811 57 HOH HOH . T 11 HOH A 112 812 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O1 MES . . . L 8 15.388 29.26 62.607 1 80.11 ? O1 MES 606 A 1 HETATM 2 C C2 MES . . . L 8 16.015 30.522 62.813 1 67.06 ? C2 MES 606 A 1 HETATM 3 C C3 MES . . . L 8 16.94 30.803 61.647 1 67.26 ? C3 MES 606 A 1 HETATM 4 N N4 MES . . . L 8 17.878 29.696 61.629 1 71.74 ? N4 MES 606 A 1 HETATM 5 C C5 MES . . . L 8 17.314 28.361 61.495 1 66.13 ? C5 MES 606 A 1 HETATM 6 C C6 MES . . . L 8 16.295 28.167 62.606 1 62.57 ? C6 MES 606 A 1 HETATM 7 C C7 MES . . . L 8 19.218 29.92 61.068 1 71.21 ? C7 MES 606 A 1 HETATM 8 C C8 MES . . . L 8 19.723 31.265 61.61 1 80.16 ? C8 MES 606 A 1 HETATM 9 S S MES . . . L 8 20.912 31.934 60.636 1 115.75 ? S MES 606 A 1 HETATM 10 O O1S MES . . . L 8 21.527 30.919 59.743 1 66.3 ? O1S MES 606 A 1 HETATM 11 O O2S MES . . . L 8 20.343 33.056 59.839 1 86.53 ? O2S MES 606 A 1 HETATM 12 O O3S MES . . . L 8 21.979 32.495 61.493 1 99.77 ? O3S MES 606 A 1 # _model_server_stats.io_time_ms 43 _model_server_stats.parse_time_ms 16 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 11 _model_server_stats.element_count 12 #