data_7ZQI # _model_server_result.job_id vFWCL_iv2tcHoWo7gaNgug _model_server_result.datetime_utc '2024-12-08 03:11:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zqi # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7ZQI # _exptl.entry_id 7ZQI _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 118.174 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (4S)-2-METHYL-2,4-PENTANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZQI _cell.length_a 39.202 _cell.length_b 48.78 _cell.length_c 202.135 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZQI _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 100 A CYS 101 1_555 A SG CYS 163 A CYS 164 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? disulf ? disulf2 A SG CYS 201 A CYS 202 1_555 A SG CYS 257 A CYS 258 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 48 B CYS 30 1_555 B SG CYS 103 B CYS 85 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.999 ? metalc ? metalc1 A O GLY 118 A GLY 119 1_555 D MG MG . A MG 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.145 ? metalc ? metalc2 D MG MG . A MG 301 1_555 G O HOH . A HOH 435 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.334 ? metalc ? metalc3 D MG MG . A MG 301 1_555 B O LYS 82 B LYS 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.302 ? metalc ? metalc4 D MG MG . A MG 301 1_555 H O HOH . B HOH 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.209 ? metalc ? metalc5 D MG MG . A MG 301 1_555 H O HOH . B HOH 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.234 ? metalc ? metalc6 D MG MG . A MG 301 1_555 H O HOH . B HOH 311 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? # _chem_comp.formula 'C6 H14 O2' _chem_comp.formula_weight 118.174 _chem_comp.id MPD _chem_comp.mon_nstd_flag . _chem_comp.name (4S)-2-METHYL-2,4-PENTANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MPD sing 237 n n C1 H11 MPD sing 238 n n C1 H12 MPD sing 239 n n C1 H13 MPD sing 240 n n C2 O2 MPD sing 241 n n C2 CM MPD sing 242 n n C2 C3 MPD sing 243 n n O2 HO2 MPD sing 244 n n CM HM1 MPD sing 245 n n CM HM2 MPD sing 246 n n CM HM3 MPD sing 247 n n C3 C4 MPD sing 248 n n C3 H31 MPD sing 249 n n C3 H32 MPD sing 250 n n C4 O4 MPD sing 251 n n C4 C5 MPD sing 252 n n C4 H4 MPD sing 253 n n O4 HO4 MPD sing 254 n n C5 H51 MPD sing 255 n n C5 H52 MPD sing 256 n n C5 H53 MPD sing 257 n n # _atom_sites.entry_id 7ZQI _atom_sites.fract_transf_matrix[1][1] 0.025509 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0205 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004947 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 MG A 1 301 1 MG MG . E 5 CL A 1 302 1 CL CL . F 6 MPD B 1 201 201 MPD MPD . G 7 HOH A 1 401 201 HOH HOH . G 7 HOH A 2 402 189 HOH HOH . G 7 HOH A 3 403 53 HOH HOH . G 7 HOH A 4 404 41 HOH HOH . G 7 HOH A 5 405 95 HOH HOH . G 7 HOH A 6 406 202 HOH HOH . G 7 HOH A 7 407 17 HOH HOH . G 7 HOH A 8 408 161 HOH HOH . G 7 HOH A 9 409 143 HOH HOH . G 7 HOH A 10 410 82 HOH HOH . G 7 HOH A 11 411 56 HOH HOH . G 7 HOH A 12 412 81 HOH HOH . G 7 HOH A 13 413 1 HOH HOH . G 7 HOH A 14 414 51 HOH HOH . G 7 HOH A 15 415 61 HOH HOH . G 7 HOH A 16 416 76 HOH HOH . G 7 HOH A 17 417 144 HOH HOH . G 7 HOH A 18 418 18 HOH HOH . G 7 HOH A 19 419 33 HOH HOH . G 7 HOH A 20 420 160 HOH HOH . G 7 HOH A 21 421 152 HOH HOH . G 7 HOH A 22 422 73 HOH HOH . G 7 HOH A 23 423 31 HOH HOH . G 7 HOH A 24 424 77 HOH HOH . G 7 HOH A 25 425 35 HOH HOH . G 7 HOH A 26 426 10 HOH HOH . G 7 HOH A 27 427 14 HOH HOH . G 7 HOH A 28 428 75 HOH HOH . G 7 HOH A 29 429 156 HOH HOH . G 7 HOH A 30 430 150 HOH HOH . G 7 HOH A 31 431 96 HOH HOH . G 7 HOH A 32 432 117 HOH HOH . G 7 HOH A 33 433 128 HOH HOH . G 7 HOH A 34 434 9 HOH HOH . G 7 HOH A 35 435 49 HOH HOH . G 7 HOH A 36 436 115 HOH HOH . G 7 HOH A 37 437 42 HOH HOH . G 7 HOH A 38 438 138 HOH HOH . G 7 HOH A 39 439 55 HOH HOH . G 7 HOH A 40 440 92 HOH HOH . G 7 HOH A 41 441 192 HOH HOH . G 7 HOH A 42 442 98 HOH HOH . G 7 HOH A 43 443 38 HOH HOH . G 7 HOH A 44 444 126 HOH HOH . G 7 HOH A 45 445 40 HOH HOH . G 7 HOH A 46 446 16 HOH HOH . G 7 HOH A 47 447 6 HOH HOH . G 7 HOH A 48 448 187 HOH HOH . G 7 HOH A 49 449 57 HOH HOH . G 7 HOH A 50 450 58 HOH HOH . G 7 HOH A 51 451 145 HOH HOH . G 7 HOH A 52 452 8 HOH HOH . G 7 HOH A 53 453 90 HOH HOH . G 7 HOH A 54 454 148 HOH HOH . G 7 HOH A 55 455 28 HOH HOH . G 7 HOH A 56 456 13 HOH HOH . G 7 HOH A 57 457 54 HOH HOH . G 7 HOH A 58 458 27 HOH HOH . G 7 HOH A 59 459 30 HOH HOH . G 7 HOH A 60 460 86 HOH HOH . G 7 HOH A 61 461 5 HOH HOH . G 7 HOH A 62 462 7 HOH HOH . G 7 HOH A 63 463 72 HOH HOH . G 7 HOH A 64 464 191 HOH HOH . G 7 HOH A 65 465 122 HOH HOH . G 7 HOH A 66 466 69 HOH HOH . G 7 HOH A 67 467 59 HOH HOH . G 7 HOH A 68 468 184 HOH HOH . G 7 HOH A 69 469 34 HOH HOH . G 7 HOH A 70 470 180 HOH HOH . G 7 HOH A 71 471 131 HOH HOH . G 7 HOH A 72 472 147 HOH HOH . G 7 HOH A 73 473 45 HOH HOH . G 7 HOH A 74 474 88 HOH HOH . G 7 HOH A 75 475 139 HOH HOH . G 7 HOH A 76 476 99 HOH HOH . G 7 HOH A 77 477 11 HOH HOH . G 7 HOH A 78 478 133 HOH HOH . G 7 HOH A 79 479 87 HOH HOH . G 7 HOH A 80 480 142 HOH HOH . G 7 HOH A 81 481 74 HOH HOH . G 7 HOH A 82 482 154 HOH HOH . G 7 HOH A 83 483 39 HOH HOH . G 7 HOH A 84 484 15 HOH HOH . G 7 HOH A 85 485 149 HOH HOH . G 7 HOH A 86 486 101 HOH HOH . G 7 HOH A 87 487 43 HOH HOH . G 7 HOH A 88 488 94 HOH HOH . G 7 HOH A 89 489 132 HOH HOH . G 7 HOH A 90 490 80 HOH HOH . G 7 HOH A 91 491 203 HOH HOH . G 7 HOH A 92 492 84 HOH HOH . G 7 HOH A 93 493 114 HOH HOH . G 7 HOH A 94 494 164 HOH HOH . G 7 HOH A 95 495 50 HOH HOH . G 7 HOH A 96 496 85 HOH HOH . G 7 HOH A 97 497 159 HOH HOH . G 7 HOH A 98 498 186 HOH HOH . G 7 HOH A 99 499 193 HOH HOH . G 7 HOH A 100 500 185 HOH HOH . G 7 HOH A 101 501 91 HOH HOH . G 7 HOH A 102 502 153 HOH HOH . G 7 HOH A 103 503 83 HOH HOH . G 7 HOH A 104 504 93 HOH HOH . G 7 HOH A 105 505 155 HOH HOH . G 7 HOH A 106 506 78 HOH HOH . G 7 HOH A 107 507 26 HOH HOH . G 7 HOH A 108 508 127 HOH HOH . G 7 HOH A 109 509 113 HOH HOH . G 7 HOH A 110 510 79 HOH HOH . G 7 HOH A 111 511 158 HOH HOH . G 7 HOH A 112 512 146 HOH HOH . G 7 HOH A 113 513 116 HOH HOH . G 7 HOH A 114 514 166 HOH HOH . G 7 HOH A 115 515 200 HOH HOH . H 7 HOH B 1 301 104 HOH HOH . H 7 HOH B 2 302 67 HOH HOH . H 7 HOH B 3 303 44 HOH HOH . H 7 HOH B 4 304 173 HOH HOH . H 7 HOH B 5 305 47 HOH HOH . H 7 HOH B 6 306 157 HOH HOH . H 7 HOH B 7 307 107 HOH HOH . H 7 HOH B 8 308 48 HOH HOH . H 7 HOH B 9 309 22 HOH HOH . H 7 HOH B 10 310 121 HOH HOH . H 7 HOH B 11 311 46 HOH HOH . H 7 HOH B 12 312 178 HOH HOH . H 7 HOH B 13 313 170 HOH HOH . H 7 HOH B 14 314 120 HOH HOH . H 7 HOH B 15 315 20 HOH HOH . H 7 HOH B 16 316 29 HOH HOH . H 7 HOH B 17 317 103 HOH HOH . H 7 HOH B 18 318 195 HOH HOH . H 7 HOH B 19 319 19 HOH HOH . H 7 HOH B 20 320 111 HOH HOH . H 7 HOH B 21 321 3 HOH HOH . H 7 HOH B 22 322 102 HOH HOH . H 7 HOH B 23 323 124 HOH HOH . H 7 HOH B 24 324 60 HOH HOH . H 7 HOH B 25 325 32 HOH HOH . H 7 HOH B 26 326 23 HOH HOH . H 7 HOH B 27 327 68 HOH HOH . H 7 HOH B 28 328 2 HOH HOH . H 7 HOH B 29 329 174 HOH HOH . H 7 HOH B 30 330 63 HOH HOH . H 7 HOH B 31 331 21 HOH HOH . H 7 HOH B 32 332 176 HOH HOH . H 7 HOH B 33 333 62 HOH HOH . H 7 HOH B 34 334 169 HOH HOH . H 7 HOH B 35 335 175 HOH HOH . H 7 HOH B 36 336 66 HOH HOH . H 7 HOH B 37 337 168 HOH HOH . H 7 HOH B 38 338 172 HOH HOH . H 7 HOH B 39 339 110 HOH HOH . H 7 HOH B 40 340 129 HOH HOH . H 7 HOH B 41 341 177 HOH HOH . H 7 HOH B 42 342 135 HOH HOH . H 7 HOH B 43 343 179 HOH HOH . H 7 HOH B 44 344 105 HOH HOH . H 7 HOH B 45 345 109 HOH HOH . H 7 HOH B 46 346 64 HOH HOH . H 7 HOH B 47 347 65 HOH HOH . H 7 HOH B 48 348 4 HOH HOH . I 7 HOH F 1 101 151 HOH HOH . I 7 HOH F 2 102 71 HOH HOH . I 7 HOH F 3 103 37 HOH HOH . I 7 HOH F 4 104 36 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MPD . . . F 6 -17.42 18.882 -21.262 1 75 ? C1 MPD 201 B 1 HETATM 2 C C2 MPD . . . F 6 -16.444 18.541 -22.404 1 71.01 ? C2 MPD 201 B 1 HETATM 3 O O2 MPD . . . F 6 -15.773 19.699 -22.854 1 59.43 ? O2 MPD 201 B 1 HETATM 4 C CM MPD . . . F 6 -15.412 17.556 -21.905 1 75.28 ? CM MPD 201 B 1 HETATM 5 C C3 MPD . . . F 6 -17.176 17.923 -23.569 1 73.96 ? C3 MPD 201 B 1 HETATM 6 C C4 MPD . . . F 6 -18.373 18.809 -23.964 1 76.29 ? C4 MPD 201 B 1 HETATM 7 O O4 MPD . . . F 6 -17.929 20.077 -24.488 1 64.25 ? O4 MPD 201 B 1 HETATM 8 C C5 MPD . . . F 6 -19.185 18.053 -25.012 1 80.81 ? C5 MPD 201 B 1 # _model_server_stats.io_time_ms 62 _model_server_stats.parse_time_ms 82 _model_server_stats.create_model_time_ms 67 _model_server_stats.query_time_ms 506 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 8 #