data_7ZQV
#
_model_server_result.job_id            us3adsITT7fO7TkqJf3tlg 
_model_server_result.datetime_utc      '2024-11-19 07:37:29' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zqv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    7ZQV 
#
_exptl.entry_id    7ZQV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              525.554 
_entity.id                          2 
_entity.src_method                  nat 
_entity.type                        non-polymer 
_entity.pdbx_description            'ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-yl)carbonyl]amino}-2-oxopyridin-1(2H)-yl]pent-4-ynoyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          100.34 
_cell.angle_gamma         90 
_cell.entry_id            7ZQV 
_cell.length_a            45.309 
_cell.length_b            54.082 
_cell.length_c            115.011 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZQV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 C C06 XNV . A XNV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.831 ? 
covale ? covale2 B SG CYS 145 B CYS 145 1_555 D C06 XNV . B XNV 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.825 ? 
#
_chem_comp.formula           'C26 H31 N5 O7' 
_chem_comp.formula_weight    525.554 
_chem_comp.id                XNV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-yl)carbonyl]amino}-2-oxopyridin-1(2H)-yl]pent-4-ynoyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'AG7404, bound form' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
H01B C01 XNV sing 376 n n 
C02 C01 XNV sing 377 n n 
H01 C01 XNV sing 378 n n 
C01 H01A XNV sing 379 n n 
O03 C02 XNV sing 380 n n 
H02A C02 XNV sing 381 n n 
C02 H02 XNV sing 382 n n 
O03 C04 XNV sing 383 n n 
C05 C04 XNV sing 384 n n 
C04 O38 XNV doub 385 n n 
H05A C05 XNV sing 386 n n 
H05 C05 XNV sing 387 n n 
C05 C06 XNV sing 388 n n 
C06 H06 XNV sing 389 n n 
C06 C07 XNV sing 390 n n 
C06 H06A XNV sing 391 n n 
N08 C07 XNV sing 392 n n 
C07 H07 XNV sing 393 n n 
C07 C31 XNV sing 394 n n 
HN08 N08 XNV sing 395 n n 
C09 N08 XNV sing 396 n n 
C10 C09 XNV sing 397 n n 
C09 O30 XNV doub 398 n n 
C27 C10 XNV sing 399 n n 
H10 C10 XNV sing 400 n n 
C10 N11 XNV sing 401 n n 
C25 N11 XNV sing 402 n n 
N11 C12 XNV sing 403 n n 
C12 O26 XNV doub 404 n n 
C12 C13 XNV sing 405 n n 
C23 C13 XNV doub 406 n n 
C13 N14 XNV sing 407 n n 
C15 N14 XNV sing 408 n n 
N14 HN14 XNV sing 409 n n 
O22 C15 XNV doub 410 n n 
C15 C16 XNV sing 411 n n 
C16 C21 XNV sing 412 n y 
C16 N17 XNV doub 413 n y 
N17 O18 XNV sing 414 n y 
C19 O18 XNV sing 415 n y 
C21 C19 XNV doub 416 n y 
C19 C20 XNV sing 417 n n 
H20B C20 XNV sing 418 n n 
C20 H20 XNV sing 419 n n 
C20 H20A XNV sing 420 n n 
H21 C21 XNV sing 421 n n 
C24 C23 XNV sing 422 n n 
C23 H23 XNV sing 423 n n 
C25 C24 XNV doub 424 n n 
H24 C24 XNV sing 425 n n 
H25 C25 XNV sing 426 n n 
C28 C27 XNV sing 427 n n 
H27 C27 XNV sing 428 n n 
C27 H27A XNV sing 429 n n 
C29 C28 XNV trip 430 n n 
H29 C29 XNV sing 431 n n 
H31 C31 XNV sing 432 n n 
C31 H31A XNV sing 433 n n 
C31 C32 XNV sing 434 n n 
H32 C32 XNV sing 435 n n 
C32 C33 XNV sing 436 n n 
C32 C36 XNV sing 437 n n 
H33 C33 XNV sing 438 n n 
C33 H33A XNV sing 439 n n 
C33 C34 XNV sing 440 n n 
H34 C34 XNV sing 441 n n 
C34 N35 XNV sing 442 n n 
C34 H34A XNV sing 443 n n 
C36 N35 XNV sing 444 n n 
N35 HN35 XNV sing 445 n n 
O37 C36 XNV doub 446 n n 
#
_atom_sites.entry_id                     7ZQV 
_atom_sites.fract_transf_matrix[1][1]    0.022071 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.004028 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.01849 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.008838 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 XNV A 1 401 401 XNV XNV . 
D 2 XNV B 1 401 401 XNV XNV . 
E 3 HOH A 1 501 96 HOH HOH . 
E 3 HOH A 2 502 70 HOH HOH . 
E 3 HOH A 3 503 19 HOH HOH . 
E 3 HOH A 4 504 68 HOH HOH . 
E 3 HOH A 5 505 32 HOH HOH . 
E 3 HOH A 6 506 22 HOH HOH . 
E 3 HOH A 7 507 23 HOH HOH . 
E 3 HOH A 8 508 87 HOH HOH . 
E 3 HOH A 9 509 11 HOH HOH . 
E 3 HOH A 10 510 49 HOH HOH . 
E 3 HOH A 11 511 25 HOH HOH . 
E 3 HOH A 12 512 38 HOH HOH . 
E 3 HOH A 13 513 97 HOH HOH . 
E 3 HOH A 14 514 12 HOH HOH . 
E 3 HOH A 15 515 81 HOH HOH . 
E 3 HOH A 16 516 98 HOH HOH . 
E 3 HOH A 17 517 55 HOH HOH . 
E 3 HOH A 18 518 51 HOH HOH . 
E 3 HOH A 19 519 27 HOH HOH . 
E 3 HOH A 20 520 65 HOH HOH . 
E 3 HOH A 21 521 89 HOH HOH . 
E 3 HOH A 22 522 103 HOH HOH . 
E 3 HOH A 23 523 93 HOH HOH . 
E 3 HOH A 24 524 29 HOH HOH . 
E 3 HOH A 25 525 14 HOH HOH . 
E 3 HOH A 26 526 24 HOH HOH . 
E 3 HOH A 27 527 26 HOH HOH . 
E 3 HOH A 28 528 28 HOH HOH . 
E 3 HOH A 29 529 79 HOH HOH . 
E 3 HOH A 30 530 100 HOH HOH . 
E 3 HOH A 31 531 20 HOH HOH . 
E 3 HOH A 32 532 102 HOH HOH . 
E 3 HOH A 33 533 92 HOH HOH . 
E 3 HOH A 34 534 80 HOH HOH . 
E 3 HOH A 35 535 3 HOH HOH . 
E 3 HOH A 36 536 50 HOH HOH . 
E 3 HOH A 37 537 10 HOH HOH . 
E 3 HOH A 38 538 9 HOH HOH . 
E 3 HOH A 39 539 17 HOH HOH . 
E 3 HOH A 40 540 76 HOH HOH . 
E 3 HOH A 41 541 16 HOH HOH . 
E 3 HOH A 42 542 86 HOH HOH . 
E 3 HOH A 43 543 90 HOH HOH . 
E 3 HOH A 44 544 13 HOH HOH . 
E 3 HOH A 45 545 18 HOH HOH . 
E 3 HOH A 46 546 91 HOH HOH . 
E 3 HOH A 47 547 44 HOH HOH . 
E 3 HOH A 48 548 31 HOH HOH . 
E 3 HOH A 49 549 95 HOH HOH . 
E 3 HOH A 50 550 15 HOH HOH . 
E 3 HOH A 51 551 63 HOH HOH . 
E 3 HOH A 52 552 104 HOH HOH . 
E 3 HOH A 53 553 4 HOH HOH . 
E 3 HOH A 54 554 101 HOH HOH . 
F 3 HOH B 1 501 71 HOH HOH . 
F 3 HOH B 2 502 33 HOH HOH . 
F 3 HOH B 3 503 69 HOH HOH . 
F 3 HOH B 4 504 62 HOH HOH . 
F 3 HOH B 5 505 82 HOH HOH . 
F 3 HOH B 6 506 42 HOH HOH . 
F 3 HOH B 7 507 45 HOH HOH . 
F 3 HOH B 8 508 46 HOH HOH . 
F 3 HOH B 9 509 47 HOH HOH . 
F 3 HOH B 10 510 2 HOH HOH . 
F 3 HOH B 11 511 58 HOH HOH . 
F 3 HOH B 12 512 77 HOH HOH . 
F 3 HOH B 13 513 56 HOH HOH . 
F 3 HOH B 14 514 73 HOH HOH . 
F 3 HOH B 15 515 84 HOH HOH . 
F 3 HOH B 16 516 61 HOH HOH . 
F 3 HOH B 17 517 21 HOH HOH . 
F 3 HOH B 18 518 1 HOH HOH . 
F 3 HOH B 19 519 8 HOH HOH . 
F 3 HOH B 20 520 60 HOH HOH . 
F 3 HOH B 21 521 78 HOH HOH . 
F 3 HOH B 22 522 57 HOH HOH . 
F 3 HOH B 23 523 64 HOH HOH . 
F 3 HOH B 24 524 66 HOH HOH . 
F 3 HOH B 25 525 83 HOH HOH . 
F 3 HOH B 26 526 5 HOH HOH . 
F 3 HOH B 27 527 34 HOH HOH . 
F 3 HOH B 28 528 35 HOH HOH . 
F 3 HOH B 29 529 40 HOH HOH . 
F 3 HOH B 30 530 30 HOH HOH . 
F 3 HOH B 31 531 54 HOH HOH . 
F 3 HOH B 32 532 53 HOH HOH . 
F 3 HOH B 33 533 7 HOH HOH . 
F 3 HOH B 34 534 67 HOH HOH . 
F 3 HOH B 35 535 88 HOH HOH . 
F 3 HOH B 36 536 72 HOH HOH . 
F 3 HOH B 37 537 94 HOH HOH . 
F 3 HOH B 38 538 48 HOH HOH . 
F 3 HOH B 39 539 59 HOH HOH . 
F 3 HOH B 40 540 52 HOH HOH . 
F 3 HOH B 41 541 75 HOH HOH . 
F 3 HOH B 42 542 37 HOH HOH . 
F 3 HOH B 43 543 36 HOH HOH . 
F 3 HOH B 44 544 74 HOH HOH . 
F 3 HOH B 45 545 39 HOH HOH . 
F 3 HOH B 46 546 85 HOH HOH . 
F 3 HOH B 47 547 43 HOH HOH . 
F 3 HOH B 48 548 99 HOH HOH . 
F 3 HOH B 49 549 6 HOH HOH . 
F 3 HOH B 50 550 41 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C01 XNV . . . C 2 -16.444 7.187 -39.075 1 67.09 ? C01 XNV 401 A 1 
HETATM 2 C C02 XNV . . . C 2 -16.181 5.851 -39.651 1 70.98 ? C02 XNV 401 A 1 
HETATM 3 O O03 XNV . . . C 2 -14.802 5.783 -40.106 1 73.88 ? O03 XNV 401 A 1 
HETATM 4 C C04 XNV . . . C 2 -13.866 5.534 -39.187 1 66.95 ? C04 XNV 401 A 1 
HETATM 5 C C05 XNV . . . C 2 -13.513 4.079 -39.113 1 56.64 ? C05 XNV 401 A 1 
HETATM 6 C C06 XNV . . . C 2 -13.083 3.483 -40.424 1 49.08 ? C06 XNV 401 A 1 
HETATM 7 C C07 XNV . . . C 2 -13.303 1.971 -40.44 1 52.29 ? C07 XNV 401 A 1 
HETATM 8 N N08 XNV . . . C 2 -13.477 1.514 -41.819 1 52.75 ? N08 XNV 401 A 1 
HETATM 9 C C09 XNV . . . C 2 -14.657 1.11 -42.291 1 54.45 ? C09 XNV 401 A 1 
HETATM 10 C C10 XNV . . . C 2 -14.784 0.913 -43.799 1 52.76 ? C10 XNV 401 A 1 
HETATM 11 N N11 XNV . . . C 2 -15.698 -0.22 -44.059 1 54.13 ? N11 XNV 401 A 1 
HETATM 12 C C12 XNV . . . C 2 -15.229 -1.519 -43.775 1 55.78 ? C12 XNV 401 A 1 
HETATM 13 C C13 XNV . . . C 2 -16.13 -2.562 -43.994 1 54.23 ? C13 XNV 401 A 1 
HETATM 14 N N14 XNV . . . C 2 -15.689 -3.875 -43.723 1 65.1 ? N14 XNV 401 A 1 
HETATM 15 C C15 XNV . . . C 2 -15.526 -4.94 -44.55 1 81.14 ? C15 XNV 401 A 1 
HETATM 16 C C16 XNV . . . C 2 -15.29 -6.224 -43.841 1 86.68 ? C16 XNV 401 A 1 
HETATM 17 N N17 XNV . . . C 2 -14.675 -6.269 -42.682 1 82.92 ? N17 XNV 401 A 1 
HETATM 18 O O18 XNV . . . C 2 -14.625 -7.626 -42.318 1 84.86 ? O18 XNV 401 A 1 
HETATM 19 C C19 XNV . . . C 2 -15.235 -8.351 -43.277 1 85.41 ? C19 XNV 401 A 1 
HETATM 20 C C20 XNV . . . C 2 -15.291 -9.816 -43.053 1 81.85 ? C20 XNV 401 A 1 
HETATM 21 C C21 XNV . . . C 2 -15.661 -7.515 -44.247 1 88.13 ? C21 XNV 401 A 1 
HETATM 22 O O22 XNV . . . C 2 -15.535 -4.869 -45.779 1 88.73 ? O22 XNV 401 A 1 
HETATM 23 C C23 XNV . . . C 2 -17.433 -2.314 -44.409 1 49.22 ? C23 XNV 401 A 1 
HETATM 24 C C24 XNV . . . C 2 -17.851 -1.009 -44.63 1 45.46 ? C24 XNV 401 A 1 
HETATM 25 C C25 XNV . . . C 2 -16.991 0.005 -44.444 1 48.99 ? C25 XNV 401 A 1 
HETATM 26 O O26 XNV . . . C 2 -14.075 -1.65 -43.381 1 55.94 ? O26 XNV 401 A 1 
HETATM 27 C C27 XNV . . . C 2 -15.18 2.243 -44.436 1 54.93 ? C27 XNV 401 A 1 
HETATM 28 C C28 XNV . . . C 2 -14.623 2.417 -45.789 1 60.29 ? C28 XNV 401 A 1 
HETATM 29 C C29 XNV . . . C 2 -14.367 2.694 -46.929 1 59.65 ? C29 XNV 401 A 1 
HETATM 30 O O30 XNV . . . C 2 -15.62 0.897 -41.553 1 58.43 ? O30 XNV 401 A 1 
HETATM 31 C C31 XNV . . . C 2 -12.211 1.157 -39.731 1 51.42 ? C31 XNV 401 A 1 
HETATM 32 C C32 XNV . . . C 2 -12.706 -0.246 -39.374 1 50.78 ? C32 XNV 401 A 1 
HETATM 33 C C33 XNV . . . C 2 -13.862 -0.357 -38.384 1 51.71 ? C33 XNV 401 A 1 
HETATM 34 C C34 XNV . . . C 2 -13.661 -1.723 -37.736 1 53.61 ? C34 XNV 401 A 1 
HETATM 35 N N35 XNV . . . C 2 -12.22 -1.923 -37.854 1 52.16 ? N35 XNV 401 A 1 
HETATM 36 C C36 XNV . . . C 2 -11.648 -1.138 -38.757 1 50.84 ? C36 XNV 401 A 1 
HETATM 37 O O37 XNV . . . C 2 -10.449 -1.141 -39.058 1 57.3 ? O37 XNV 401 A 1 
HETATM 38 O O38 XNV . . . C 2 -13.351 6.383 -38.503 1 75.38 ? O38 XNV 401 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           274 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           38 
#