data_7ZQW # _model_server_result.job_id YOHzy02Tzt4HVaFDvwyacg _model_server_result.datetime_utc '2024-11-21 08:59:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zqw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 7ZQW # _exptl.entry_id 7ZQW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 525.554 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-yl)carbonyl]amino}-2-oxopyridin-1(2H)-yl]pent-4-ynoyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZQW _cell.length_a 106.854 _cell.length_b 45.22 _cell.length_c 53.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZQW _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -x,-y,z -1 0 0 0 -1 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C06 _struct_conn.ptnr2_label_comp_id XNV _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id XNV _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.837 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C26 H31 N5 O7' _chem_comp.formula_weight 525.554 _chem_comp.id XNV _chem_comp.mon_nstd_flag . _chem_comp.name 'ethyl (4R)-4-({(2S)-2-[3-{[(5-methyl-1,2-oxazol-3-yl)carbonyl]amino}-2-oxopyridin-1(2H)-yl]pent-4-ynoyl}amino)-5-[(3S)-2-oxopyrrolidin-3-yl]pentanoate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'AG7404, bound form' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag H01B C01 XNV sing 376 n n C02 C01 XNV sing 377 n n H01 C01 XNV sing 378 n n C01 H01A XNV sing 379 n n O03 C02 XNV sing 380 n n H02A C02 XNV sing 381 n n C02 H02 XNV sing 382 n n O03 C04 XNV sing 383 n n C05 C04 XNV sing 384 n n C04 O38 XNV doub 385 n n H05A C05 XNV sing 386 n n H05 C05 XNV sing 387 n n C05 C06 XNV sing 388 n n C06 H06 XNV sing 389 n n C06 C07 XNV sing 390 n n C06 H06A XNV sing 391 n n N08 C07 XNV sing 392 n n C07 H07 XNV sing 393 n n C07 C31 XNV sing 394 n n HN08 N08 XNV sing 395 n n C09 N08 XNV sing 396 n n C10 C09 XNV sing 397 n n C09 O30 XNV doub 398 n n C27 C10 XNV sing 399 n n H10 C10 XNV sing 400 n n C10 N11 XNV sing 401 n n C25 N11 XNV sing 402 n n N11 C12 XNV sing 403 n n C12 O26 XNV doub 404 n n C12 C13 XNV sing 405 n n C23 C13 XNV doub 406 n n C13 N14 XNV sing 407 n n C15 N14 XNV sing 408 n n N14 HN14 XNV sing 409 n n O22 C15 XNV doub 410 n n C15 C16 XNV sing 411 n n C16 C21 XNV sing 412 n y C16 N17 XNV doub 413 n y N17 O18 XNV sing 414 n y C19 O18 XNV sing 415 n y C21 C19 XNV doub 416 n y C19 C20 XNV sing 417 n n H20B C20 XNV sing 418 n n C20 H20 XNV sing 419 n n C20 H20A XNV sing 420 n n H21 C21 XNV sing 421 n n C24 C23 XNV sing 422 n n C23 H23 XNV sing 423 n n C25 C24 XNV doub 424 n n H24 C24 XNV sing 425 n n H25 C25 XNV sing 426 n n C28 C27 XNV sing 427 n n H27 C27 XNV sing 428 n n C27 H27A XNV sing 429 n n C29 C28 XNV trip 430 n n H29 C29 XNV sing 431 n n H31 C31 XNV sing 432 n n C31 H31A XNV sing 433 n n C31 C32 XNV sing 434 n n H32 C32 XNV sing 435 n n C32 C33 XNV sing 436 n n C32 C36 XNV sing 437 n n H33 C33 XNV sing 438 n n C33 H33A XNV sing 439 n n C33 C34 XNV sing 440 n n H34 C34 XNV sing 441 n n C34 N35 XNV sing 442 n n C34 H34A XNV sing 443 n n C36 N35 XNV sing 444 n n N35 HN35 XNV sing 445 n n O37 C36 XNV doub 446 n n # _atom_sites.entry_id 7ZQW _atom_sites.fract_transf_matrix[1][1] 0.009359 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.022114 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018674 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 XNV A 1 401 1 XNV XNV . C 3 HOH A 1 501 1 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C01 XNV . . . B 2 10.936 20.891 17.967 1 89.82 ? C01 XNV 401 A 1 HETATM 2 C C02 XNV . . . B 2 11.416 20.692 16.582 1 96.28 ? C02 XNV 401 A 1 HETATM 3 O O03 XNV . . . B 2 11.953 19.351 16.442 1 100.78 ? O03 XNV 401 A 1 HETATM 4 C C04 XNV . . . B 2 11.074 18.376 16.254 1 89.73 ? C04 XNV 401 A 1 HETATM 5 C C05 XNV . . . B 2 10.95 18.018 14.809 1 83.9 ? C05 XNV 401 A 1 HETATM 6 C C06 XNV . . . B 2 12.234 17.545 14.155 1 73.68 ? C06 XNV 401 A 1 HETATM 7 C C07 XNV . . . B 2 12.174 17.745 12.651 1 69.47 ? C07 XNV 401 A 1 HETATM 8 N N08 XNV . . . B 2 13.538 17.878 12.159 1 67.12 ? N08 XNV 401 A 1 HETATM 9 C C09 XNV . . . B 2 13.996 19.05 11.733 1 71.62 ? C09 XNV 401 A 1 HETATM 10 C C10 XNV . . . B 2 15.503 19.191 11.588 1 75.18 ? C10 XNV 401 A 1 HETATM 11 N N11 XNV . . . B 2 15.726 20.098 10.447 1 75.98 ? N11 XNV 401 A 1 HETATM 12 C C12 XNV . . . B 2 15.359 19.644 9.166 1 75.82 ? C12 XNV 401 A 1 HETATM 13 C C13 XNV . . . B 2 15.529 20.553 8.123 1 81.28 ? C13 XNV 401 A 1 HETATM 14 N N14 XNV . . . B 2 15.204 20.154 6.808 1 84.44 ? N14 XNV 401 A 1 HETATM 15 C C15 XNV . . . B 2 16.025 19.865 5.773 1 94.85 ? C15 XNV 401 A 1 HETATM 16 C C16 XNV . . . B 2 15.315 19.696 4.491 1 103.47 ? C16 XNV 401 A 1 HETATM 17 N N17 XNV . . . B 2 14.145 19.109 4.447 1 101.38 ? N17 XNV 401 A 1 HETATM 18 O O18 XNV . . . B 2 13.761 19.128 3.098 1 102.87 ? O18 XNV 401 A 1 HETATM 19 C C19 XNV . . . B 2 14.72 19.753 2.383 1 109.89 ? C19 XNV 401 A 1 HETATM 20 C C20 XNV . . . B 2 14.466 19.891 0.929 1 108.2 ? C20 XNV 401 A 1 HETATM 21 C C21 XNV . . . B 2 15.71 20.125 3.218 1 110.65 ? C21 XNV 401 A 1 HETATM 22 O O22 XNV . . . B 2 17.242 19.738 5.859 1 100.1 ? O22 XNV 401 A 1 HETATM 23 C C23 XNV . . . B 2 15.987 21.845 8.362 1 78.46 ? C23 XNV 401 A 1 HETATM 24 C C24 XNV . . . B 2 16.307 22.239 9.655 1 72.02 ? C24 XNV 401 A 1 HETATM 25 C C25 XNV . . . B 2 16.15 21.374 10.667 1 69.7 ? C25 XNV 401 A 1 HETATM 26 O O26 XNV . . . B 2 14.948 18.496 9.043 1 67.23 ? O26 XNV 401 A 1 HETATM 27 C C27 XNV . . . B 2 16.145 19.613 12.909 1 72.58 ? C27 XNV 401 A 1 HETATM 28 C C28 XNV . . . B 2 17.479 19.038 13.026 1 71.81 ? C28 XNV 401 A 1 HETATM 29 C C29 XNV . . . B 2 18.576 18.626 13.1 1 77.4 ? C29 XNV 401 A 1 HETATM 30 O O30 XNV . . . B 2 13.255 19.979 11.416 1 68.32 ? O30 XNV 401 A 1 HETATM 31 C C31 XNV . . . B 2 11.42 16.661 11.877 1 65.58 ? C31 XNV 401 A 1 HETATM 32 C C32 XNV . . . B 2 11.093 17.142 10.467 1 67.57 ? C32 XNV 401 A 1 HETATM 33 C C33 XNV . . . B 2 10.066 18.26 10.398 1 72.82 ? C33 XNV 401 A 1 HETATM 34 C C34 XNV . . . B 2 9.415 18.085 9.042 1 75.37 ? C34 XNV 401 A 1 HETATM 35 N N35 XNV . . . B 2 9.585 16.659 8.789 1 73.32 ? N35 XNV 401 A 1 HETATM 36 C C36 XNV . . . B 2 10.51 16.088 9.549 1 69.88 ? C36 XNV 401 A 1 HETATM 37 O O37 XNV . . . B 2 10.842 14.887 9.51 1 69.82 ? O37 XNV 401 A 1 HETATM 38 O O38 XNV . . . B 2 10.448 17.872 17.144 1 103.7 ? O38 XNV 401 A 1 # _model_server_stats.io_time_ms 88 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #