data_7ZRG
#
_model_server_result.job_id            v9X3me5DNLJKQfO0plBvyA 
_model_server_result.datetime_utc      '2024-11-04 23:21:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zrg 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"L","auth_seq_id":608}' 
#
_entry.id    7ZRG 
#
_exptl.entry_id    7ZRG 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              1464.043 
_entity.id                          6 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            CARDIOLIPIN 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZRG 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZRG 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 6 L N N 
? 6 M N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 D C GLU 161 B GLU 161 1_555 D N SEP 162 B SEP 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale2 D C SEP 162 B SEP 162 1_555 D N ALA 163 B ALA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 A O ASN 112 A ASN 112 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? 
metalc ? metalc2 A O THR 113 A THR 113 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? 
metalc ? metalc3 A O ASN 231 A ASN 231 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc4 A O GLY 232 A GLY 232 1_555 K K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
metalc ? metalc5 A O SER 343 A SER 343 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? 
metalc ? metalc6 A OG SER 343 A SER 343 1_555 J K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? 
metalc ? metalc7 A O CYS 344 A CYS 344 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? 
metalc ? metalc8 A O GLY 345 A GLY 345 1_555 K K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? 
metalc ? metalc9 A O GLY 369 A GLY 369 1_555 G K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? 
metalc ? metalc10 A OG SER 378 A SER 378 1_555 J K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? 
metalc ? metalc11 A O ASN 466 A ASN 466 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? 
metalc ? metalc12 A O ASN 467 A ASN 467 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? 
metalc ? metalc13 A O GLY 468 A GLY 468 1_555 K K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? 
#
_chem_comp.formula           'C81 H156 O17 P2 -2' 
_chem_comp.formula_weight    1464.043 
_chem_comp.id                CDL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              CARDIOLIPIN 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     "DIPHOSPHATIDYL GLYCEROL;BIS-(1,2-DIACYL-SN-GLYCERO-3-PHOSPHO)-1',3'-SN-GLYCEROL" 
#
_atom_sites.entry_id                     7ZRG 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 5 K A 1 601 601 K K . 
F 5 K A 1 602 603 K K . 
G 5 K A 1 603 604 K K . 
H 5 K A 1 604 606 K K . 
I 5 K A 1 605 608 K K . 
J 5 K A 1 606 609 K K . 
K 5 K A 1 607 612 K K . 
L 6 CDL A 1 608 701 CDL CDL . 
M 6 CDL A 1 609 702 CDL CDL . 
N 7 ATP B 1 701 701 ATP ATP . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 CDL . . . L 6 149.971 120.306 124.935 1 43.8 ? C1 CDL 608 A 1 
HETATM 2 O O1 CDL . . . L 6 148.957 121.256 124.615 1 43.8 ? O1 CDL 608 A 1 
HETATM 3 C CA2 CDL . . . L 6 150.05 119.279 123.828 1 43.8 ? CA2 CDL 608 A 1 
HETATM 4 O OA2 CDL . . . L 6 151.166 118.386 124.084 1 43.8 ? OA2 CDL 608 A 1 
HETATM 5 P PA1 CDL . . . L 6 152.015 117.825 122.843 1 43.8 ? PA1 CDL 608 A 1 
HETATM 6 O OA3 CDL . . . L 6 152.523 119.008 122.065 1 43.8 ? OA3 CDL 608 A 1 
HETATM 7 O OA4 CDL . . . L 6 152.979 116.8 123.374 1 43.8 ? OA4 CDL 608 A 1 
HETATM 8 O OA5 CDL . . . L 6 150.889 117.087 121.968 1 43.8 ? OA5 CDL 608 A 1 
HETATM 9 C CA3 CDL . . . L 6 151.239 115.917 121.177 1 43.8 ? CA3 CDL 608 A 1 
HETATM 10 C CA4 CDL . . . L 6 151.883 116.332 119.868 1 43.8 ? CA4 CDL 608 A 1 
HETATM 11 O OA6 CDL . . . L 6 150.988 117.073 118.97 1 43.8 ? OA6 CDL 608 A 1 
HETATM 12 C CA5 CDL . . . L 6 149.657 116.863 118.989 1 43.8 ? CA5 CDL 608 A 1 
HETATM 13 O OA7 CDL . . . L 6 148.914 117.493 119.696 1 43.8 ? OA7 CDL 608 A 1 
HETATM 14 C C11 CDL . . . L 6 149.169 115.841 118 1 43.8 ? C11 CDL 608 A 1 
HETATM 15 C C12 CDL . . . L 6 148.152 114.913 118.573 1 43.8 ? C12 CDL 608 A 1 
HETATM 16 C C13 CDL . . . L 6 148.663 113.492 118.71 1 43.8 ? C13 CDL 608 A 1 
HETATM 17 C C14 CDL . . . L 6 148.247 112.815 119.991 1 43.8 ? C14 CDL 608 A 1 
HETATM 18 C C15 CDL . . . L 6 146.758 112.791 120.225 1 43.8 ? C15 CDL 608 A 1 
HETATM 19 C C16 CDL . . . L 6 146.008 111.82 119.349 1 43.8 ? C16 CDL 608 A 1 
HETATM 20 C C17 CDL . . . L 6 144.554 111.666 119.709 1 43.8 ? C17 CDL 608 A 1 
HETATM 21 C C18 CDL . . . L 6 143.945 110.348 119.304 1 43.8 ? C18 CDL 608 A 1 
HETATM 22 C C19 CDL . . . L 6 144.906 109.184 119.283 1 43.8 ? C19 CDL 608 A 1 
HETATM 23 C C20 CDL . . . L 6 144.315 107.898 118.76 1 43.8 ? C20 CDL 608 A 1 
HETATM 24 C C21 CDL . . . L 6 142.809 107.889 118.692 1 43.8 ? C21 CDL 608 A 1 
HETATM 25 C C22 CDL . . . L 6 142.164 106.67 119.294 1 43.8 ? C22 CDL 608 A 1 
HETATM 26 C C23 CDL . . . L 6 140.798 106.368 118.738 1 43.8 ? C23 CDL 608 A 1 
HETATM 27 C C24 CDL . . . L 6 140.259 105.019 119.127 1 43.8 ? C24 CDL 608 A 1 
HETATM 28 C C25 CDL . . . L 6 139.42 105.031 120.377 1 43.8 ? C25 CDL 608 A 1 
HETATM 29 C C26 CDL . . . L 6 138.752 103.716 120.672 1 43.8 ? C26 CDL 608 A 1 
HETATM 30 C C27 CDL . . . L 6 138.622 103.403 122.142 1 43.8 ? C27 CDL 608 A 1 
HETATM 31 C CA6 CDL . . . L 6 152.494 115.158 119.128 1 43.8 ? CA6 CDL 608 A 1 
HETATM 32 O OA8 CDL . . . L 6 153.19 115.639 117.958 1 43.8 ? OA8 CDL 608 A 1 
HETATM 33 C CA7 CDL . . . L 6 152.814 115.121 116.792 1 43.8 ? CA7 CDL 608 A 1 
HETATM 34 O OA9 CDL . . . L 6 152.663 113.941 116.609 1 43.8 ? OA9 CDL 608 A 1 
HETATM 35 C C31 CDL . . . L 6 152.608 116.19 115.755 1 43.8 ? C31 CDL 608 A 1 
HETATM 36 C C32 CDL . . . L 6 153.885 116.792 115.261 1 43.8 ? C32 CDL 608 A 1 
HETATM 37 C C33 CDL . . . L 6 154.71 115.819 114.437 1 43.8 ? C33 CDL 608 A 1 
HETATM 38 C C34 CDL . . . L 6 154.208 115.622 113.029 1 43.8 ? C34 CDL 608 A 1 
HETATM 39 C C35 CDL . . . L 6 154.583 114.296 112.416 1 43.8 ? C35 CDL 608 A 1 
HETATM 40 C C36 CDL . . . L 6 154.192 113.099 113.244 1 43.8 ? C36 CDL 608 A 1 
HETATM 41 C C37 CDL . . . L 6 153.473 112.02 112.473 1 43.8 ? C37 CDL 608 A 1 
HETATM 42 C C38 CDL . . . L 6 152.459 111.251 113.282 1 43.8 ? C38 CDL 608 A 1 
HETATM 43 C C39 CDL . . . L 6 152.879 110.974 114.704 1 43.8 ? C39 CDL 608 A 1 
HETATM 44 C C40 CDL . . . L 6 153.059 109.512 115.025 1 43.8 ? C40 CDL 608 A 1 
HETATM 45 C C41 CDL . . . L 6 154.498 109.057 115.056 1 43.8 ? C41 CDL 608 A 1 
HETATM 46 C C42 CDL . . . L 6 154.891 108.152 113.914 1 43.8 ? C42 CDL 608 A 1 
HETATM 47 C C43 CDL . . . L 6 154.143 106.842 113.874 1 43.8 ? C43 CDL 608 A 1 
HETATM 48 C C44 CDL . . . L 6 153.627 106.465 112.507 1 43.8 ? C44 CDL 608 A 1 
HETATM 49 C C45 CDL . . . L 6 152.129 106.288 112.437 1 43.8 ? C45 CDL 608 A 1 
HETATM 50 C C46 CDL . . . L 6 151.37 107.481 111.914 1 43.8 ? C46 CDL 608 A 1 
HETATM 51 C C47 CDL . . . L 6 151.904 108.03 110.612 1 43.8 ? C47 CDL 608 A 1 
HETATM 52 C CB2 CDL . . . L 6 149.692 119.714 126.299 1 43.8 ? CB2 CDL 608 A 1 
HETATM 53 O OB2 CDL . . . L 6 148.66 118.692 126.212 1 43.8 ? OB2 CDL 608 A 1 
HETATM 54 P PB2 CDL . . . L 6 148.693 117.447 127.226 1 43.8 ? PB2 CDL 608 A 1 
HETATM 55 O OB3 CDL . . . L 6 147.356 117.388 127.913 1 43.8 ? OB3 CDL 608 A 1 
HETATM 56 O OB4 CDL . . . L 6 149.952 117.513 128.046 1 43.8 ? OB4 CDL 608 A 1 
HETATM 57 O OB5 CDL . . . L 6 148.841 116.193 126.234 1 43.8 ? OB5 CDL 608 A 1 
HETATM 58 C CB3 CDL . . . L 6 147.728 115.27 126.068 1 43.8 ? CB3 CDL 608 A 1 
HETATM 59 C CB4 CDL . . . L 6 147.087 115.434 124.707 1 43.8 ? CB4 CDL 608 A 1 
HETATM 60 O OB6 CDL . . . L 6 146.529 114.156 124.29 1 43.8 ? OB6 CDL 608 A 1 
HETATM 61 C CB5 CDL . . . L 6 145.348 113.77 124.804 1 43.8 ? CB5 CDL 608 A 1 
HETATM 62 O OB7 CDL . . . L 6 144.485 114.537 125.142 1 43.8 ? OB7 CDL 608 A 1 
HETATM 63 C C51 CDL . . . L 6 145.233 112.277 124.888 1 43.8 ? C51 CDL 608 A 1 
HETATM 64 C C52 CDL . . . L 6 144.695 111.661 123.64 1 43.8 ? C52 CDL 608 A 1 
HETATM 65 C C53 CDL . . . L 6 145.162 110.232 123.447 1 43.8 ? C53 CDL 608 A 1 
HETATM 66 C C54 CDL . . . L 6 144.045 109.224 123.382 1 43.8 ? C54 CDL 608 A 1 
HETATM 67 C C55 CDL . . . L 6 144.175 108.104 124.379 1 43.8 ? C55 CDL 608 A 1 
HETATM 68 C C56 CDL . . . L 6 142.863 107.503 124.809 1 43.8 ? C56 CDL 608 A 1 
HETATM 69 C C57 CDL . . . L 6 141.975 107.074 123.672 1 43.8 ? C57 CDL 608 A 1 
HETATM 70 C C58 CDL . . . L 6 141.338 105.723 123.869 1 43.8 ? C58 CDL 608 A 1 
HETATM 71 C C59 CDL . . . L 6 142.314 104.572 123.862 1 43.8 ? C59 CDL 608 A 1 
HETATM 72 C C60 CDL . . . L 6 142.547 103.964 122.502 1 43.8 ? C60 CDL 608 A 1 
HETATM 73 C C61 CDL . . . L 6 143.998 103.736 122.163 1 43.8 ? C61 CDL 608 A 1 
HETATM 74 C C62 CDL . . . L 6 144.724 104.972 121.694 1 43.8 ? C62 CDL 608 A 1 
HETATM 75 C C63 CDL . . . L 6 145.836 104.704 120.713 1 43.8 ? C63 CDL 608 A 1 
HETATM 76 C C64 CDL . . . L 6 145.471 103.745 119.609 1 43.8 ? C64 CDL 608 A 1 
HETATM 77 C C65 CDL . . . L 6 146.612 103.402 118.686 1 43.8 ? C65 CDL 608 A 1 
HETATM 78 C C66 CDL . . . L 6 146.495 102.047 118.038 1 43.8 ? C66 CDL 608 A 1 
HETATM 79 C C67 CDL . . . L 6 146.881 100.907 118.948 1 43.8 ? C67 CDL 608 A 1 
HETATM 80 C CB6 CDL . . . L 6 148.042 115.936 123.646 1 43.8 ? CB6 CDL 608 A 1 
HETATM 81 O OB8 CDL . . . L 6 147.373 115.979 122.366 1 43.8 ? OB8 CDL 608 A 1 
HETATM 82 C CB7 CDL . . . L 6 146.653 117.063 122.09 1 43.8 ? CB7 CDL 608 A 1 
HETATM 83 O OB9 CDL . . . L 6 146.834 118.14 122.599 1 43.8 ? OB9 CDL 608 A 1 
HETATM 84 C C71 CDL . . . L 6 145.618 116.772 121.044 1 43.8 ? C71 CDL 608 A 1 
HETATM 85 C C72 CDL . . . L 6 144.586 115.789 121.484 1 43.8 ? C72 CDL 608 A 1 
HETATM 86 C C73 CDL . . . L 6 143.195 116.391 121.529 1 43.8 ? C73 CDL 608 A 1 
HETATM 87 C C74 CDL . . . L 6 142.409 116.04 122.764 1 43.8 ? C74 CDL 608 A 1 
HETATM 88 C C75 CDL . . . L 6 141.275 115.081 122.522 1 43.8 ? C75 CDL 608 A 1 
HETATM 89 C C76 CDL . . . L 6 141.69 113.638 122.446 1 43.8 ? C76 CDL 608 A 1 
HETATM 90 C C77 CDL . . . L 6 140.61 112.713 121.964 1 43.8 ? C77 CDL 608 A 1 
HETATM 91 C C78 CDL . . . L 6 141 111.259 121.966 1 43.8 ? C78 CDL 608 A 1 
HETATM 92 C C79 CDL . . . L 6 140.417 110.461 120.829 1 43.8 ? C79 CDL 608 A 1 
HETATM 93 C C80 CDL . . . L 6 139.767 109.168 121.25 1 43.8 ? C80 CDL 608 A 1 
HETATM 94 C C81 CDL . . . L 6 138.619 109.333 122.208 1 43.8 ? C81 CDL 608 A 1 
HETATM 95 C C82 CDL . . . L 6 138.253 108.081 122.955 1 43.8 ? C82 CDL 608 A 1 
HETATM 96 C C83 CDL . . . L 6 136.86 107.602 122.673 1 43.8 ? C83 CDL 608 A 1 
HETATM 97 C C84 CDL . . . L 6 136.421 106.427 123.5 1 43.8 ? C84 CDL 608 A 1 
HETATM 98 C C85 CDL . . . L 6 134.926 106.26 123.578 1 43.8 ? C85 CDL 608 A 1 
HETATM 99 C C86 CDL . . . L 6 134.488 104.994 124.258 1 43.8 ? C86 CDL 608 A 1 
HETATM 100 C C87 CDL . . . L 6 134.827 103.747 123.48 1 43.8 ? C87 CDL 608 A 1 
#
_model_server_stats.io_time_ms              10 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    9 
_model_server_stats.query_time_ms           294 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           100 
#