data_7ZRG # _model_server_result.job_id qrKZnWzBDvVgYd3oauR2sA _model_server_result.datetime_utc '2024-11-26 16:39:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zrg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"N","auth_seq_id":701}' # _entry.id 7ZRG # _exptl.entry_id 7ZRG _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 507.181 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "ADENOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZRG _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZRG _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id N _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 D C GLU 161 B GLU 161 1_555 D N SEP 162 B SEP 162 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale2 D C SEP 162 B SEP 162 1_555 D N ALA 163 B ALA 163 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 A O ASN 112 A ASN 112 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.804 ? metalc ? metalc2 A O THR 113 A THR 113 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.961 ? metalc ? metalc3 A O ASN 231 A ASN 231 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc4 A O GLY 232 A GLY 232 1_555 K K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? metalc ? metalc5 A O SER 343 A SER 343 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.833 ? metalc ? metalc6 A OG SER 343 A SER 343 1_555 J K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.947 ? metalc ? metalc7 A O CYS 344 A CYS 344 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.031 ? metalc ? metalc8 A O GLY 345 A GLY 345 1_555 K K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc9 A O GLY 369 A GLY 369 1_555 G K K . A K 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.015 ? metalc ? metalc10 A OG SER 378 A SER 378 1_555 J K K . A K 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.935 ? metalc ? metalc11 A O ASN 466 A ASN 466 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.982 ? metalc ? metalc12 A O ASN 467 A ASN 467 1_555 I K K . A K 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.814 ? metalc ? metalc13 A O GLY 468 A GLY 468 1_555 K K K . A K 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.893 ? # _chem_comp.formula 'C10 H16 N5 O13 P3' _chem_comp.formula_weight 507.181 _chem_comp.id ATP _chem_comp.mon_nstd_flag . _chem_comp.name "ADENOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ATP doub 70 n n PG O2G ATP sing 71 n n PG O3G ATP sing 72 n n PG O3B ATP sing 73 n n O2G HOG2 ATP sing 74 n n O3G HOG3 ATP sing 75 n n PB O1B ATP doub 76 n n PB O2B ATP sing 77 n n PB O3B ATP sing 78 n n PB O3A ATP sing 79 n n O2B HOB2 ATP sing 80 n n PA O1A ATP doub 81 n n PA O2A ATP sing 82 n n PA O3A ATP sing 83 n n PA O5' ATP sing 84 n n O2A HOA2 ATP sing 85 n n O5' C5' ATP sing 86 n n C5' C4' ATP sing 87 n n C5' "H5'1" ATP sing 88 n n C5' "H5'2" ATP sing 89 n n C4' O4' ATP sing 90 n n C4' C3' ATP sing 91 n n C4' H4' ATP sing 92 n n O4' C1' ATP sing 93 n n C3' O3' ATP sing 94 n n C3' C2' ATP sing 95 n n C3' H3' ATP sing 96 n n O3' HO3' ATP sing 97 n n C2' O2' ATP sing 98 n n C2' C1' ATP sing 99 n n C2' H2' ATP sing 100 n n O2' HO2' ATP sing 101 n n C1' N9 ATP sing 102 n n C1' H1' ATP sing 103 n n N9 C8 ATP sing 104 n y N9 C4 ATP sing 105 n y C8 N7 ATP doub 106 n y C8 H8 ATP sing 107 n n N7 C5 ATP sing 108 n y C5 C6 ATP sing 109 n y C5 C4 ATP doub 110 n y C6 N6 ATP sing 111 n n C6 N1 ATP doub 112 n y N6 HN61 ATP sing 113 n n N6 HN62 ATP sing 114 n n N1 C2 ATP sing 115 n y C2 N3 ATP doub 116 n y C2 H2 ATP sing 117 n n N3 C4 ATP sing 118 n y # _atom_sites.entry_id 7ZRG _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 K A 1 601 601 K K . F 5 K A 1 602 603 K K . G 5 K A 1 603 604 K K . H 5 K A 1 604 606 K K . I 5 K A 1 605 608 K K . J 5 K A 1 606 609 K K . K 5 K A 1 607 612 K K . L 6 CDL A 1 608 701 CDL CDL . M 6 CDL A 1 609 702 CDL CDL . N 7 ATP B 1 701 701 ATP ATP . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ATP . . . N 7 135.723 146.352 165.639 1 127.88 ? PG ATP 701 B 1 HETATM 2 O O1G ATP . . . N 7 136.512 145.222 166.208 1 127.88 ? O1G ATP 701 B 1 HETATM 3 O O2G ATP . . . N 7 136.487 147.171 164.593 1 127.88 ? O2G ATP 701 B 1 HETATM 4 O O3G ATP . . . N 7 134.373 145.927 165.053 1 127.88 ? O3G ATP 701 B 1 HETATM 5 P PB ATP . . . N 7 136.023 148.16 168.009 1 127.88 ? PB ATP 701 B 1 HETATM 6 O O1B ATP . . . N 7 135.746 149.611 167.985 1 127.88 ? O1B ATP 701 B 1 HETATM 7 O O2B ATP . . . N 7 135.594 147.424 169.279 1 127.88 ? O2B ATP 701 B 1 HETATM 8 O O3B ATP . . . N 7 135.349 147.408 166.781 1 127.88 ? O3B ATP 701 B 1 HETATM 9 P PA ATP . . . N 7 138.719 147.03 168.5 1 127.88 ? PA ATP 701 B 1 HETATM 10 O O1A ATP . . . N 7 139.011 145.76 167.804 1 127.88 ? O1A ATP 701 B 1 HETATM 11 O O2A ATP . . . N 7 138.32 146.884 169.968 1 127.88 ? O2A ATP 701 B 1 HETATM 12 O O3A ATP . . . N 7 137.567 147.855 167.771 1 127.88 ? O3A ATP 701 B 1 HETATM 13 O O5' ATP . . . N 7 139.94 148.027 168.428 1 127.88 ? O5' ATP 701 B 1 HETATM 14 C C5' ATP . . . N 7 139.75 149.451 168.56 1 127.88 ? C5' ATP 701 B 1 HETATM 15 C C4' ATP . . . N 7 141.028 150.076 169.06 1 127.88 ? C4' ATP 701 B 1 HETATM 16 O O4' ATP . . . N 7 140.741 150.918 170.2 1 127.88 ? O4' ATP 701 B 1 HETATM 17 C C3' ATP . . . N 7 142.098 149.091 169.526 1 127.88 ? C3' ATP 701 B 1 HETATM 18 O O3' ATP . . . N 7 143.403 149.581 169.242 1 127.88 ? O3' ATP 701 B 1 HETATM 19 C C2' ATP . . . N 7 141.84 149.005 171.031 1 127.88 ? C2' ATP 701 B 1 HETATM 20 O O2' ATP . . . N 7 143.019 148.658 171.748 1 127.88 ? O2' ATP 701 B 1 HETATM 21 C C1' ATP . . . N 7 141.431 150.444 171.342 1 127.88 ? C1' ATP 701 B 1 HETATM 22 N N9 ATP . . . N 7 140.555 150.579 172.501 1 127.88 ? N9 ATP 701 B 1 HETATM 23 C C8 ATP . . . N 7 139.792 149.601 173.083 1 127.88 ? C8 ATP 701 B 1 HETATM 24 N N7 ATP . . . N 7 139.099 150.007 174.119 1 127.88 ? N7 ATP 701 B 1 HETATM 25 C C5 ATP . . . N 7 139.431 151.35 174.228 1 127.88 ? C5 ATP 701 B 1 HETATM 26 C C6 ATP . . . N 7 139.033 152.357 175.128 1 127.88 ? C6 ATP 701 B 1 HETATM 27 N N6 ATP . . . N 7 138.176 152.161 176.135 1 127.88 ? N6 ATP 701 B 1 HETATM 28 N N1 ATP . . . N 7 139.553 153.594 174.958 1 127.88 ? N1 ATP 701 B 1 HETATM 29 C C2 ATP . . . N 7 140.408 153.799 173.953 1 127.88 ? C2 ATP 701 B 1 HETATM 30 N N3 ATP . . . N 7 140.856 152.929 173.046 1 127.88 ? N3 ATP 701 B 1 HETATM 31 C C4 ATP . . . N 7 140.328 151.716 173.238 1 127.88 ? C4 ATP 701 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 26 _model_server_stats.query_time_ms 248 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 31 #