data_7ZRW # _model_server_result.job_id nsS-Oxvve9YSBF3TDdcbVw _model_server_result.datetime_utc '2025-01-11 05:56:22' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zrw # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":201}' # _entry.id 7ZRW # _exptl.entry_id 7ZRW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZRW _cell.length_a 105.473 _cell.length_b 105.473 _cell.length_c 105.473 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZRW _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 139 A CYS 119 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.769 ? covale ? covale2 A SG CYS 142 A CYS 122 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.791 ? covale ? covale3 B SG CYS 139 B CYS 119 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.77 ? covale ? covale4 B SG CYS 142 B CYS 122 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.794 ? metalc ? metalc1 A NE2 HIS 91 A HIS 71 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.003 ? metalc ? metalc2 A NE2 HIS 91 A HIS 71 1_555 D ZN ZN . A ZN 202 8_555 ? ? ? ? A ? ? ? ? ? ? ? 2.002 ? metalc ? metalc3 A NE2 HIS 143 A HIS 123 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.075 ? metalc ? metalc4 D ZN ZN . A ZN 202 1_555 H O HOH . A HOH 331 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.084 ? metalc ? metalc5 D ZN ZN . A ZN 202 1_555 H O HOH . A HOH 331 8_555 ? A ? ? ? ? ? ? ? ? ? ? 2.083 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 142 n n FE NB HEC sing 143 n n FE NC HEC sing 144 n n FE ND HEC sing 145 n n CHA C1A HEC doub 146 n n CHA C4D HEC sing 147 n n CHA HHA HEC sing 148 n n CHB C4A HEC doub 149 n n CHB C1B HEC sing 150 n n CHB HHB HEC sing 151 n n CHC C4B HEC doub 152 n n CHC C1C HEC sing 153 n n CHC HHC HEC sing 154 n n CHD C4C HEC doub 155 n n CHD C1D HEC sing 156 n n CHD HHD HEC sing 157 n n NA C1A HEC sing 158 n y NA C4A HEC sing 159 n y C1A C2A HEC sing 160 n y C2A C3A HEC doub 161 n y C2A CAA HEC sing 162 n n C3A C4A HEC sing 163 n y C3A CMA HEC sing 164 n n CMA HMA1 HEC sing 165 n n CMA HMA2 HEC sing 166 n n CMA HMA3 HEC sing 167 n n CAA CBA HEC sing 168 n n CAA HAA1 HEC sing 169 n n CAA HAA2 HEC sing 170 n n CBA CGA HEC sing 171 n n CBA HBA1 HEC sing 172 n n CBA HBA2 HEC sing 173 n n CGA O1A HEC doub 174 n n CGA O2A HEC sing 175 n n O2A H2A HEC sing 176 n n NB C1B HEC sing 177 n y NB C4B HEC sing 178 n y C1B C2B HEC doub 179 n y C2B C3B HEC sing 180 n y C2B CMB HEC sing 181 n n C3B C4B HEC sing 182 n y C3B CAB HEC doub 183 e n CMB HMB1 HEC sing 184 n n CMB HMB2 HEC sing 185 n n CMB HMB3 HEC sing 186 n n CAB CBB HEC sing 187 n n CAB HAB HEC sing 188 n n CBB HBB1 HEC sing 189 n n CBB HBB2 HEC sing 190 n n CBB HBB3 HEC sing 191 n n NC C1C HEC sing 192 n y NC C4C HEC sing 193 n y C1C C2C HEC doub 194 n y C2C C3C HEC sing 195 n y C2C CMC HEC sing 196 n n C3C C4C HEC sing 197 n y C3C CAC HEC doub 198 e n CMC HMC1 HEC sing 199 n n CMC HMC2 HEC sing 200 n n CMC HMC3 HEC sing 201 n n CAC CBC HEC sing 202 n n CAC HAC HEC sing 203 n n CBC HBC1 HEC sing 204 n n CBC HBC2 HEC sing 205 n n CBC HBC3 HEC sing 206 n n ND C1D HEC sing 207 n y ND C4D HEC sing 208 n y C1D C2D HEC doub 209 n y C2D C3D HEC sing 210 n y C2D CMD HEC sing 211 n n C3D C4D HEC doub 212 n y C3D CAD HEC sing 213 n n CMD HMD1 HEC sing 214 n n CMD HMD2 HEC sing 215 n n CMD HMD3 HEC sing 216 n n CAD CBD HEC sing 217 n n CAD HAD1 HEC sing 218 n n CAD HAD2 HEC sing 219 n n CBD CGD HEC sing 220 n n CBD HBD1 HEC sing 221 n n CBD HBD2 HEC sing 222 n n CGD O1D HEC doub 223 n n CGD O2D HEC sing 224 n n O2D H2D HEC sing 225 n n # _atom_sites.entry_id 7ZRW _atom_sites.fract_transf_matrix[1][1] 0.009481 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009481 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009481 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 139 HEC HEC . D 3 ZN A 1 202 1 ZN ZN . E 4 GOL A 1 203 1 GOL GOL . F 2 HEC B 1 201 139 HEC HEC . G 4 GOL B 1 202 3 GOL GOL . H 5 HOH A 1 301 106 HOH HOH . H 5 HOH A 2 302 52 HOH HOH . H 5 HOH A 3 303 23 HOH HOH . H 5 HOH A 4 304 99 HOH HOH . H 5 HOH A 5 305 56 HOH HOH . H 5 HOH A 6 306 49 HOH HOH . H 5 HOH A 7 307 127 HOH HOH . H 5 HOH A 8 308 16 HOH HOH . H 5 HOH A 9 309 69 HOH HOH . H 5 HOH A 10 310 13 HOH HOH . H 5 HOH A 11 311 26 HOH HOH . H 5 HOH A 12 312 4 HOH HOH . H 5 HOH A 13 313 151 HOH HOH . H 5 HOH A 14 314 5 HOH HOH . H 5 HOH A 15 315 41 HOH HOH . H 5 HOH A 16 316 29 HOH HOH . H 5 HOH A 17 317 7 HOH HOH . H 5 HOH A 18 318 61 HOH HOH . H 5 HOH A 19 319 70 HOH HOH . H 5 HOH A 20 320 58 HOH HOH . H 5 HOH A 21 321 30 HOH HOH . H 5 HOH A 22 322 90 HOH HOH . H 5 HOH A 23 323 62 HOH HOH . H 5 HOH A 24 324 14 HOH HOH . H 5 HOH A 25 325 64 HOH HOH . H 5 HOH A 26 326 100 HOH HOH . H 5 HOH A 27 327 67 HOH HOH . H 5 HOH A 28 328 24 HOH HOH . H 5 HOH A 29 329 37 HOH HOH . H 5 HOH A 30 330 138 HOH HOH . H 5 HOH A 31 331 80 HOH HOH . H 5 HOH A 32 332 17 HOH HOH . H 5 HOH A 33 333 8 HOH HOH . H 5 HOH A 34 334 96 HOH HOH . H 5 HOH A 35 335 102 HOH HOH . H 5 HOH A 36 336 180 HOH HOH . H 5 HOH A 37 337 95 HOH HOH . H 5 HOH A 38 338 18 HOH HOH . H 5 HOH A 39 339 116 HOH HOH . H 5 HOH A 40 340 45 HOH HOH . H 5 HOH A 41 341 152 HOH HOH . H 5 HOH A 42 342 39 HOH HOH . H 5 HOH A 43 343 36 HOH HOH . H 5 HOH A 44 344 65 HOH HOH . H 5 HOH A 45 345 169 HOH HOH . H 5 HOH A 46 346 163 HOH HOH . H 5 HOH A 47 347 78 HOH HOH . H 5 HOH A 48 348 225 HOH HOH . H 5 HOH A 49 349 147 HOH HOH . I 5 HOH B 1 301 137 HOH HOH . I 5 HOH B 2 302 195 HOH HOH . I 5 HOH B 3 303 143 HOH HOH . I 5 HOH B 4 304 94 HOH HOH . I 5 HOH B 5 305 50 HOH HOH . I 5 HOH B 6 306 38 HOH HOH . I 5 HOH B 7 307 35 HOH HOH . I 5 HOH B 8 308 20 HOH HOH . I 5 HOH B 9 309 60 HOH HOH . I 5 HOH B 10 310 98 HOH HOH . I 5 HOH B 11 311 9 HOH HOH . I 5 HOH B 12 312 42 HOH HOH . I 5 HOH B 13 313 121 HOH HOH . I 5 HOH B 14 314 71 HOH HOH . I 5 HOH B 15 315 105 HOH HOH . I 5 HOH B 16 316 27 HOH HOH . I 5 HOH B 17 317 85 HOH HOH . I 5 HOH B 18 318 11 HOH HOH . I 5 HOH B 19 319 6 HOH HOH . I 5 HOH B 20 320 66 HOH HOH . I 5 HOH B 21 321 31 HOH HOH . I 5 HOH B 22 322 44 HOH HOH . I 5 HOH B 23 323 21 HOH HOH . I 5 HOH B 24 324 88 HOH HOH . I 5 HOH B 25 325 2 HOH HOH . I 5 HOH B 26 326 59 HOH HOH . I 5 HOH B 27 327 10 HOH HOH . I 5 HOH B 28 328 139 HOH HOH . I 5 HOH B 29 329 19 HOH HOH . I 5 HOH B 30 330 47 HOH HOH . I 5 HOH B 31 331 122 HOH HOH . I 5 HOH B 32 332 86 HOH HOH . I 5 HOH B 33 333 77 HOH HOH . I 5 HOH B 34 334 3 HOH HOH . I 5 HOH B 35 335 97 HOH HOH . I 5 HOH B 36 336 54 HOH HOH . I 5 HOH B 37 337 87 HOH HOH . I 5 HOH B 38 338 140 HOH HOH . I 5 HOH B 39 339 189 HOH HOH . I 5 HOH B 40 340 93 HOH HOH . I 5 HOH B 41 341 84 HOH HOH . I 5 HOH B 42 342 149 HOH HOH . I 5 HOH B 43 343 134 HOH HOH . I 5 HOH B 44 344 79 HOH HOH . I 5 HOH B 45 345 107 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . F 2 -25.499 15.195 9.057 1 45.23 ? FE HEC 201 B 1 HETATM 2 C CHA HEC . . . F 2 -24.799 17.158 6.461 1 42.03 ? CHA HEC 201 B 1 HETATM 3 C CHB HEC . . . F 2 -23.895 12.603 7.468 1 46.56 ? CHB HEC 201 B 1 HETATM 4 C CHC HEC . . . F 2 -25.52 13.373 11.937 1 46.18 ? CHC HEC 201 B 1 HETATM 5 C CHD HEC . . . F 2 -26.737 17.856 10.779 1 46.7 ? CHD HEC 201 B 1 HETATM 6 N NA HEC . . . F 2 -24.519 14.906 7.307 1 44.85 ? NA HEC 201 B 1 HETATM 7 C C1A HEC . . . F 2 -24.531 15.799 6.273 1 43 ? C1A HEC 201 B 1 HETATM 8 C C2A HEC . . . F 2 -24.155 15.214 5.063 1 45.46 ? C2A HEC 201 B 1 HETATM 9 C C3A HEC . . . F 2 -23.864 13.87 5.32 1 43.82 ? C3A HEC 201 B 1 HETATM 10 C C4A HEC . . . F 2 -24.097 13.75 6.703 1 48.16 ? C4A HEC 201 B 1 HETATM 11 C CMA HEC . . . F 2 -23.426 12.811 4.301 1 40.9 ? CMA HEC 201 B 1 HETATM 12 C CAA HEC . . . F 2 -24.096 15.907 3.715 1 44.25 ? CAA HEC 201 B 1 HETATM 13 C CBA HEC . . . F 2 -25.484 15.755 3.09 1 38.27 ? CBA HEC 201 B 1 HETATM 14 C CGA HEC . . . F 2 -26.474 16.755 3.653 1 41.99 ? CGA HEC 201 B 1 HETATM 15 O O1A HEC . . . F 2 -26.213 17.985 3.559 1 42.97 ? O1A HEC 201 B 1 HETATM 16 O O2A HEC . . . F 2 -27.5 16.298 4.171 1 41.37 ? O2A HEC 201 B 1 HETATM 17 N NB HEC . . . F 2 -24.779 13.356 9.63 1 45.22 ? NB HEC 201 B 1 HETATM 18 C C1B HEC . . . F 2 -24.193 12.429 8.856 1 45.61 ? C1B HEC 201 B 1 HETATM 19 C C2B HEC . . . F 2 -24.037 11.189 9.567 1 47.11 ? C2B HEC 201 B 1 HETATM 20 C C3B HEC . . . F 2 -24.556 11.371 10.862 1 47.69 ? C3B HEC 201 B 1 HETATM 21 C C4B HEC . . . F 2 -24.988 12.719 10.827 1 47.22 ? C4B HEC 201 B 1 HETATM 22 C CMB HEC . . . F 2 -23.387 9.968 8.993 1 45.18 ? CMB HEC 201 B 1 HETATM 23 C CAB HEC . . . F 2 -24.574 10.412 12.047 1 48.64 ? CAB HEC 201 B 1 HETATM 24 C CBB HEC . . . F 2 -23.203 9.823 12.264 1 51.1 ? CBB HEC 201 B 1 HETATM 25 N NC HEC . . . F 2 -26.047 15.553 10.993 1 47.36 ? NC HEC 201 B 1 HETATM 26 C C1C HEC . . . F 2 -26.113 14.644 12.007 1 45.63 ? C1C HEC 201 B 1 HETATM 27 C C2C HEC . . . F 2 -26.736 15.147 13.157 1 45.93 ? C2C HEC 201 B 1 HETATM 28 C C3C HEC . . . F 2 -27.135 16.466 12.834 1 48.11 ? C3C HEC 201 B 1 HETATM 29 C C4C HEC . . . F 2 -26.633 16.651 11.511 1 46.53 ? C4C HEC 201 B 1 HETATM 30 C CMC HEC . . . F 2 -26.888 14.424 14.476 1 50.67 ? CMC HEC 201 B 1 HETATM 31 C CAC HEC . . . F 2 -27.991 17.487 13.587 1 51.87 ? CAC HEC 201 B 1 HETATM 32 C CBC HEC . . . F 2 -27.923 17.491 15.118 1 48.57 ? CBC HEC 201 B 1 HETATM 33 N ND HEC . . . F 2 -25.522 17.184 8.819 1 45.21 ? ND HEC 201 B 1 HETATM 34 C C1D HEC . . . F 2 -26.138 18.148 9.553 1 48.09 ? C1D HEC 201 B 1 HETATM 35 C C2D HEC . . . F 2 -26.172 19.404 8.934 1 41.92 ? C2D HEC 201 B 1 HETATM 36 C C3D HEC . . . F 2 -25.552 19.196 7.715 1 44.35 ? C3D HEC 201 B 1 HETATM 37 C C4D HEC . . . F 2 -25.235 17.824 7.665 1 43.54 ? C4D HEC 201 B 1 HETATM 38 C CMD HEC . . . F 2 -26.721 20.709 9.449 1 42.63 ? CMD HEC 201 B 1 HETATM 39 C CAD HEC . . . F 2 -25.334 20.2 6.608 1 41.29 ? CAD HEC 201 B 1 HETATM 40 C CBD HEC . . . F 2 -23.928 20.77 6.505 1 38.85 ? CBD HEC 201 B 1 HETATM 41 C CGD HEC . . . F 2 -23.778 21.82 5.442 1 40.99 ? CGD HEC 201 B 1 HETATM 42 O O1D HEC . . . F 2 -22.649 22.176 4.999 1 40.69 ? O1D HEC 201 B 1 HETATM 43 O O2D HEC . . . F 2 -24.805 22.417 5.056 1 43.77 ? O2D HEC 201 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 259 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 43 #