data_7ZRX # _model_server_result.job_id 3m11jm2J5sGZpyeVgPLnUA _model_server_result.datetime_utc '2025-01-11 05:57:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zrx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":201}' # _entry.id 7ZRX # _exptl.entry_id 7ZRX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 618.503 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'HEME C' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZRX _cell.length_a 105.537 _cell.length_b 105.537 _cell.length_c 105.537 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZRX _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 139 A CYS 119 1_555 D CAB HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale2 A SG CYS 142 A CYS 122 1_555 D CAC HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? covale ? covale3 B SG CYS 139 B CYS 119 1_555 E CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.792 ? covale ? covale4 B SG CYS 142 B CYS 122 1_555 E CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.811 ? metalc ? metalc1 A NE2 HIS 91 A HIS 71 1_555 C ZN ZN . A ZN 201 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.065 ? metalc ? metalc2 A NE2 HIS 91 A HIS 71 1_555 C ZN ZN . A ZN 201 11_455 ? ? ? ? A ? ? ? ? ? ? ? 2.07 ? metalc ? metalc3 A NE2 HIS 143 A HIS 123 1_555 D FE HEC . A HEC 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.126 ? metalc ? metalc4 C ZN ZN . A ZN 201 1_555 I O HOH . A HOH 337 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.204 ? metalc ? metalc5 C ZN ZN . A ZN 201 1_555 I O HOH . A HOH 337 11_455 ? A ? ? ? ? ? ? ? ? ? ? 2.206 ? metalc ? metalc6 B OE2 GLU 88 B GLU 68 1_555 H ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.051 ? metalc ? metalc7 B ND1 HIS 91 B HIS 71 1_555 H ZN ZN . B ZN 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.244 ? metalc ? metalc8 B NE2 HIS 143 B HIS 123 1_555 E FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? # _chem_comp.formula 'C34 H34 Fe N4 O4' _chem_comp.formula_weight 618.503 _chem_comp.id HEC _chem_comp.mon_nstd_flag . _chem_comp.name 'HEME C' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag FE NA HEC sing 142 n n FE NB HEC sing 143 n n FE NC HEC sing 144 n n FE ND HEC sing 145 n n CHA C1A HEC doub 146 n n CHA C4D HEC sing 147 n n CHA HHA HEC sing 148 n n CHB C4A HEC doub 149 n n CHB C1B HEC sing 150 n n CHB HHB HEC sing 151 n n CHC C4B HEC doub 152 n n CHC C1C HEC sing 153 n n CHC HHC HEC sing 154 n n CHD C4C HEC doub 155 n n CHD C1D HEC sing 156 n n CHD HHD HEC sing 157 n n NA C1A HEC sing 158 n y NA C4A HEC sing 159 n y C1A C2A HEC sing 160 n y C2A C3A HEC doub 161 n y C2A CAA HEC sing 162 n n C3A C4A HEC sing 163 n y C3A CMA HEC sing 164 n n CMA HMA1 HEC sing 165 n n CMA HMA2 HEC sing 166 n n CMA HMA3 HEC sing 167 n n CAA CBA HEC sing 168 n n CAA HAA1 HEC sing 169 n n CAA HAA2 HEC sing 170 n n CBA CGA HEC sing 171 n n CBA HBA1 HEC sing 172 n n CBA HBA2 HEC sing 173 n n CGA O1A HEC doub 174 n n CGA O2A HEC sing 175 n n O2A H2A HEC sing 176 n n NB C1B HEC sing 177 n y NB C4B HEC sing 178 n y C1B C2B HEC doub 179 n y C2B C3B HEC sing 180 n y C2B CMB HEC sing 181 n n C3B C4B HEC sing 182 n y C3B CAB HEC doub 183 e n CMB HMB1 HEC sing 184 n n CMB HMB2 HEC sing 185 n n CMB HMB3 HEC sing 186 n n CAB CBB HEC sing 187 n n CAB HAB HEC sing 188 n n CBB HBB1 HEC sing 189 n n CBB HBB2 HEC sing 190 n n CBB HBB3 HEC sing 191 n n NC C1C HEC sing 192 n y NC C4C HEC sing 193 n y C1C C2C HEC doub 194 n y C2C C3C HEC sing 195 n y C2C CMC HEC sing 196 n n C3C C4C HEC sing 197 n y C3C CAC HEC doub 198 e n CMC HMC1 HEC sing 199 n n CMC HMC2 HEC sing 200 n n CMC HMC3 HEC sing 201 n n CAC CBC HEC sing 202 n n CAC HAC HEC sing 203 n n CBC HBC1 HEC sing 204 n n CBC HBC2 HEC sing 205 n n CBC HBC3 HEC sing 206 n n ND C1D HEC sing 207 n y ND C4D HEC sing 208 n y C1D C2D HEC doub 209 n y C2D C3D HEC sing 210 n y C2D CMD HEC sing 211 n n C3D C4D HEC doub 212 n y C3D CAD HEC sing 213 n n CMD HMD1 HEC sing 214 n n CMD HMD2 HEC sing 215 n n CMD HMD3 HEC sing 216 n n CAD CBD HEC sing 217 n n CAD HAD1 HEC sing 218 n n CAD HAD2 HEC sing 219 n n CBD CGD HEC sing 220 n n CBD HBD1 HEC sing 221 n n CBD HBD2 HEC sing 222 n n CGD O1D HEC doub 223 n n CGD O2D HEC sing 224 n n O2D H2D HEC sing 225 n n # _atom_sites.entry_id 7ZRX _atom_sites.fract_transf_matrix[1][1] 0.009475 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009475 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009475 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 201 202 ZN ZN . D 3 HEC A 1 202 203 HEC HEC . E 3 HEC B 1 201 201 HEC HEC . F 4 GOL B 1 202 202 GOL GOL . G 4 GOL B 1 203 203 GOL GOL . H 2 ZN B 1 204 204 ZN ZN . I 5 HOH A 1 301 341 HOH HOH . I 5 HOH A 2 302 304 HOH HOH . I 5 HOH A 3 303 307 HOH HOH . I 5 HOH A 4 304 345 HOH HOH . I 5 HOH A 5 305 332 HOH HOH . I 5 HOH A 6 306 320 HOH HOH . I 5 HOH A 7 307 330 HOH HOH . I 5 HOH A 8 308 333 HOH HOH . I 5 HOH A 9 309 331 HOH HOH . I 5 HOH A 10 310 326 HOH HOH . I 5 HOH A 11 311 322 HOH HOH . I 5 HOH A 12 312 325 HOH HOH . I 5 HOH A 13 313 327 HOH HOH . I 5 HOH A 14 314 350 HOH HOH . I 5 HOH A 15 315 339 HOH HOH . I 5 HOH A 16 316 370 HOH HOH . I 5 HOH A 17 317 349 HOH HOH . I 5 HOH A 18 318 375 HOH HOH . I 5 HOH A 19 319 340 HOH HOH . I 5 HOH A 20 320 347 HOH HOH . I 5 HOH A 21 321 309 HOH HOH . I 5 HOH A 22 322 387 HOH HOH . I 5 HOH A 23 323 334 HOH HOH . I 5 HOH A 24 324 324 HOH HOH . I 5 HOH A 25 325 373 HOH HOH . I 5 HOH A 26 326 361 HOH HOH . I 5 HOH A 27 327 366 HOH HOH . I 5 HOH A 28 328 365 HOH HOH . I 5 HOH A 29 329 314 HOH HOH . I 5 HOH A 30 330 389 HOH HOH . I 5 HOH A 31 331 372 HOH HOH . I 5 HOH A 32 332 381 HOH HOH . I 5 HOH A 33 333 358 HOH HOH . I 5 HOH A 34 334 370 HOH HOH . I 5 HOH A 35 335 388 HOH HOH . I 5 HOH A 36 336 354 HOH HOH . I 5 HOH A 37 337 344 HOH HOH . I 5 HOH A 38 338 393 HOH HOH . I 5 HOH A 39 339 351 HOH HOH . I 5 HOH A 40 340 384 HOH HOH . I 5 HOH A 41 341 377 HOH HOH . I 5 HOH A 42 342 380 HOH HOH . I 5 HOH A 43 343 385 HOH HOH . I 5 HOH A 44 344 386 HOH HOH . I 5 HOH A 45 345 394 HOH HOH . I 5 HOH A 46 346 398 HOH HOH . I 5 HOH A 47 347 355 HOH HOH . I 5 HOH A 48 348 395 HOH HOH . I 5 HOH A 49 349 407 HOH HOH . I 5 HOH A 50 350 401 HOH HOH . I 5 HOH A 51 351 411 HOH HOH . J 5 HOH B 1 301 307 HOH HOH . J 5 HOH B 2 302 383 HOH HOH . J 5 HOH B 3 303 316 HOH HOH . J 5 HOH B 4 304 313 HOH HOH . J 5 HOH B 5 305 355 HOH HOH . J 5 HOH B 6 306 312 HOH HOH . J 5 HOH B 7 307 309 HOH HOH . J 5 HOH B 8 308 388 HOH HOH . J 5 HOH B 9 309 321 HOH HOH . J 5 HOH B 10 310 351 HOH HOH . J 5 HOH B 11 311 320 HOH HOH . J 5 HOH B 12 312 358 HOH HOH . J 5 HOH B 13 313 382 HOH HOH . J 5 HOH B 14 314 338 HOH HOH . J 5 HOH B 15 315 332 HOH HOH . J 5 HOH B 16 316 385 HOH HOH . J 5 HOH B 17 317 322 HOH HOH . J 5 HOH B 18 318 350 HOH HOH . J 5 HOH B 19 319 327 HOH HOH . J 5 HOH B 20 320 304 HOH HOH . J 5 HOH B 21 321 324 HOH HOH . J 5 HOH B 22 322 335 HOH HOH . J 5 HOH B 23 323 323 HOH HOH . J 5 HOH B 24 324 364 HOH HOH . J 5 HOH B 25 325 337 HOH HOH . J 5 HOH B 26 326 330 HOH HOH . J 5 HOH B 27 327 362 HOH HOH . J 5 HOH B 28 328 356 HOH HOH . J 5 HOH B 29 329 347 HOH HOH . J 5 HOH B 30 330 343 HOH HOH . J 5 HOH B 31 331 346 HOH HOH . J 5 HOH B 32 332 340 HOH HOH . J 5 HOH B 33 333 348 HOH HOH . J 5 HOH B 34 334 360 HOH HOH . J 5 HOH B 35 335 359 HOH HOH . J 5 HOH B 36 336 346 HOH HOH . J 5 HOH B 37 337 337 HOH HOH . J 5 HOH B 38 338 328 HOH HOH . J 5 HOH B 39 339 384 HOH HOH . J 5 HOH B 40 340 368 HOH HOH . J 5 HOH B 41 341 361 HOH HOH . J 5 HOH B 42 342 381 HOH HOH . J 5 HOH B 43 343 365 HOH HOH . J 5 HOH B 44 344 367 HOH HOH . J 5 HOH B 45 345 372 HOH HOH . J 5 HOH B 46 346 348 HOH HOH . J 5 HOH B 47 347 382 HOH HOH . J 5 HOH B 48 348 389 HOH HOH . J 5 HOH B 49 349 378 HOH HOH . J 5 HOH B 50 350 387 HOH HOH . J 5 HOH B 51 351 375 HOH HOH . J 5 HOH B 52 352 302 HOH HOH . J 5 HOH B 53 353 366 HOH HOH . J 5 HOH B 54 354 395 HOH HOH . J 5 HOH B 55 355 398 HOH HOH . J 5 HOH B 56 356 400 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 FE FE HEC . . . E 3 -25.481 15.178 9.1 1 45.48 ? FE HEC 201 B 1 HETATM 2 C CHA HEC . . . E 3 -24.835 17.142 6.441 1 41.25 ? CHA HEC 201 B 1 HETATM 3 C CHB HEC . . . E 3 -24.079 12.487 7.418 1 43.03 ? CHB HEC 201 B 1 HETATM 4 C CHC HEC . . . E 3 -25.592 13.289 11.976 1 42.99 ? CHC HEC 201 B 1 HETATM 5 C CHD HEC . . . E 3 -26.901 17.816 10.807 1 45.23 ? CHD HEC 201 B 1 HETATM 6 N NA HEC . . . E 3 -24.589 14.857 7.26 1 47.52 ? NA HEC 201 B 1 HETATM 7 C C1A HEC . . . E 3 -24.52 15.751 6.268 1 45.71 ? C1A HEC 201 B 1 HETATM 8 C C2A HEC . . . E 3 -23.97 15.246 5.013 1 43.25 ? C2A HEC 201 B 1 HETATM 9 C C3A HEC . . . E 3 -23.763 13.822 5.259 1 41.72 ? C3A HEC 201 B 1 HETATM 10 C C4A HEC . . . E 3 -24.198 13.723 6.681 1 43.49 ? C4A HEC 201 B 1 HETATM 11 C CMA HEC . . . E 3 -23.233 12.756 4.304 1 41.39 ? CMA HEC 201 B 1 HETATM 12 C CAA HEC . . . E 3 -23.846 16.027 3.749 1 44.8 ? CAA HEC 201 B 1 HETATM 13 C CBA HEC . . . E 3 -25.3 15.805 3.116 1 41.97 ? CBA HEC 201 B 1 HETATM 14 C CGA HEC . . . E 3 -26.413 16.74 3.625 1 47.37 ? CGA HEC 201 B 1 HETATM 15 O O1A HEC . . . E 3 -26.214 17.985 3.531 1 41.37 ? O1A HEC 201 B 1 HETATM 16 O O2A HEC . . . E 3 -27.466 16.305 4.185 1 41.61 ? O2A HEC 201 B 1 HETATM 17 N NB HEC . . . E 3 -24.876 13.255 9.629 1 44.84 ? NB HEC 201 B 1 HETATM 18 C C1B HEC . . . E 3 -24.322 12.317 8.853 1 45.32 ? C1B HEC 201 B 1 HETATM 19 C C2B HEC . . . E 3 -24.072 11.009 9.532 1 42.96 ? C2B HEC 201 B 1 HETATM 20 C C3B HEC . . . E 3 -24.534 11.275 10.868 1 43.28 ? C3B HEC 201 B 1 HETATM 21 C C4B HEC . . . E 3 -25.006 12.657 10.819 1 43.58 ? C4B HEC 201 B 1 HETATM 22 C CMB HEC . . . E 3 -23.427 9.809 8.948 1 40.45 ? CMB HEC 201 B 1 HETATM 23 C CAB HEC . . . E 3 -24.523 10.306 12.018 1 45.12 ? CAB HEC 201 B 1 HETATM 24 C CBB HEC . . . E 3 -23.158 9.809 12.382 1 46.36 ? CBB HEC 201 B 1 HETATM 25 N NC HEC . . . E 3 -26.171 15.504 11.037 1 50.3 ? NC HEC 201 B 1 HETATM 26 C C1C HEC . . . E 3 -26.168 14.628 12.058 1 46.17 ? C1C HEC 201 B 1 HETATM 27 C C2C HEC . . . E 3 -26.774 15.101 13.318 1 46.65 ? C2C HEC 201 B 1 HETATM 28 C C3C HEC . . . E 3 -27.147 16.483 12.957 1 49.48 ? C3C HEC 201 B 1 HETATM 29 C C4C HEC . . . E 3 -26.765 16.585 11.535 1 47.27 ? C4C HEC 201 B 1 HETATM 30 C CMC HEC . . . E 3 -26.907 14.347 14.607 1 46.36 ? CMC HEC 201 B 1 HETATM 31 C CAC HEC . . . E 3 -27.968 17.484 13.744 1 49.64 ? CAC HEC 201 B 1 HETATM 32 C CBC HEC . . . E 3 -27.941 17.55 15.225 1 50.01 ? CBC HEC 201 B 1 HETATM 33 N ND HEC . . . E 3 -25.776 17.17 8.724 1 48.28 ? ND HEC 201 B 1 HETATM 34 C C1D HEC . . . E 3 -26.312 18.116 9.5 1 48.74 ? C1D HEC 201 B 1 HETATM 35 C C2D HEC . . . E 3 -26.338 19.459 8.895 1 40.61 ? C2D HEC 201 B 1 HETATM 36 C C3D HEC . . . E 3 -25.677 19.238 7.613 1 41.75 ? C3D HEC 201 B 1 HETATM 37 C C4D HEC . . . E 3 -25.41 17.8 7.621 1 48.14 ? C4D HEC 201 B 1 HETATM 38 C CMD HEC . . . E 3 -26.866 20.77 9.407 1 43.52 ? CMD HEC 201 B 1 HETATM 39 C CAD HEC . . . E 3 -25.417 20.226 6.49 1 42.53 ? CAD HEC 201 B 1 HETATM 40 C CBD HEC . . . E 3 -24.002 20.785 6.53 1 36.45 ? CBD HEC 201 B 1 HETATM 41 C CGD HEC . . . E 3 -23.769 21.833 5.447 1 40.43 ? CGD HEC 201 B 1 HETATM 42 O O1D HEC . . . E 3 -22.641 22.195 5.008 1 37.99 ? O1D HEC 201 B 1 HETATM 43 O O2D HEC . . . E 3 -24.756 22.413 5.024 1 40.48 ? O2D HEC 201 B 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 43 #