data_7ZSM # _model_server_result.job_id PMCUfotiPNu_5xGAU5fqrg _model_server_result.datetime_utc '2025-02-18 01:32:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zsm # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7ZSM # _exptl.entry_id 7ZSM _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 379.328 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(~{E})-2-[4-methoxy-2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenyl]ethenyl]phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZSM _cell.length_a 142.53 _cell.length_b 142.53 _cell.length_c 164.3 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZSM _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C15 H14 N3 O5 P S' _chem_comp.formula_weight 379.328 _chem_comp.id JU9 _chem_comp.mon_nstd_flag . _chem_comp.name '[(~{E})-2-[4-methoxy-2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenyl]ethenyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O4 P1 JU9 doub 173 n n C7 P1 JU9 sing 174 n n C7 C6 JU9 doub 175 e n C4 C3 JU9 doub 176 n y C4 C5 JU9 sing 177 n y C3 C2 JU9 sing 178 n y P1 O2 JU9 sing 179 n n P1 O3 JU9 sing 180 n n C6 C5 JU9 sing 181 n n C5 C8 JU9 doub 182 n y C2 O1 JU9 sing 183 n n C2 C15 JU9 doub 184 n y O1 C1 JU9 sing 185 n n C8 C15 JU9 sing 186 n y C8 S1 JU9 sing 187 n n S1 C9 JU9 sing 188 n n C9 C14 JU9 sing 189 n y C9 C10 JU9 doub 190 n y N3 C14 JU9 sing 191 n n N3 C13 JU9 doub 192 n n C14 C11 JU9 doub 193 n y C13 N2 JU9 sing 194 n n C10 N1 JU9 sing 195 n y C11 N1 JU9 sing 196 n y C11 C12 JU9 sing 197 n n N2 C12 JU9 sing 198 n n C12 O5 JU9 doub 199 n n N1 H1 JU9 sing 200 n n C4 H2 JU9 sing 201 n n C6 H3 JU9 sing 202 n n C7 H4 JU9 sing 203 n n C10 H5 JU9 sing 204 n n C13 H6 JU9 sing 205 n n C15 H7 JU9 sing 206 n n C1 H8 JU9 sing 207 n n C1 H9 JU9 sing 208 n n C1 H10 JU9 sing 209 n n C3 H11 JU9 sing 210 n n O2 H12 JU9 sing 211 n n O3 H13 JU9 sing 212 n n N2 H14 JU9 sing 213 n n # _atom_sites.entry_id 7ZSM _atom_sites.fract_transf_matrix[1][1] 0.007016 _atom_sites.fract_transf_matrix[1][2] 0.004051 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008101 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006086 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JU9 A 1 301 301 JU9 LIG . C 3 SO4 A 1 302 1 SO4 SO4 . D 3 SO4 A 1 303 2 SO4 SO4 . E 4 CL A 1 304 1 CL CL . F 4 CL A 1 305 2 CL CL . G 4 CL A 1 306 3 CL CL . H 5 HOH A 1 401 15 HOH HOH . H 5 HOH A 2 402 5 HOH HOH . H 5 HOH A 3 403 20 HOH HOH . H 5 HOH A 4 404 19 HOH HOH . H 5 HOH A 5 405 25 HOH HOH . H 5 HOH A 6 406 21 HOH HOH . H 5 HOH A 7 407 8 HOH HOH . H 5 HOH A 8 408 16 HOH HOH . H 5 HOH A 9 409 13 HOH HOH . H 5 HOH A 10 410 14 HOH HOH . H 5 HOH A 11 411 22 HOH HOH . H 5 HOH A 12 412 26 HOH HOH . H 5 HOH A 13 413 24 HOH HOH . H 5 HOH A 14 414 12 HOH HOH . H 5 HOH A 15 415 27 HOH HOH . H 5 HOH A 16 416 17 HOH HOH . H 5 HOH A 17 417 1 HOH HOH . H 5 HOH A 18 418 18 HOH HOH . H 5 HOH A 19 419 28 HOH HOH . H 5 HOH A 20 420 23 HOH HOH . H 5 HOH A 21 421 4 HOH HOH . H 5 HOH A 22 422 6 HOH HOH . H 5 HOH A 23 423 9 HOH HOH . H 5 HOH A 24 424 7 HOH HOH . H 5 HOH A 25 425 10 HOH HOH . H 5 HOH A 26 426 11 HOH HOH . H 5 HOH A 27 427 3 HOH HOH . H 5 HOH A 28 428 2 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JU9 . . . B 2 -17.437 -8.308 -53.872 1 84.43 ? N1 JU9 301 A 1 HETATM 2 N N3 JU9 . . . B 2 -14.746 -6.699 -55.5 1 78.99 ? N3 JU9 301 A 1 HETATM 3 C C4 JU9 . . . B 2 -18.552 -7.321 -60.453 1 96.4 ? C4 JU9 301 A 1 HETATM 4 C C5 JU9 . . . B 2 -18.403 -6.427 -59.384 1 91.18 ? C5 JU9 301 A 1 HETATM 5 C C6 JU9 . . . B 2 -18.889 -5.051 -59.482 1 89.68 ? C6 JU9 301 A 1 HETATM 6 C C7 JU9 . . . B 2 -19.476 -4.464 -60.508 1 88.99 ? C7 JU9 301 A 1 HETATM 7 C C8 JU9 . . . B 2 -17.779 -6.855 -58.208 1 86.95 ? C8 JU9 301 A 1 HETATM 8 C C10 JU9 . . . B 2 -18.123 -7.569 -54.785 1 86.85 ? C10 JU9 301 A 1 HETATM 9 C C13 JU9 . . . B 2 -13.706 -7.158 -54.878 1 81.3 ? C13 JU9 301 A 1 HETATM 10 C C15 JU9 . . . B 2 -17.321 -8.163 -58.119 1 90.17 ? C15 JU9 301 A 1 HETATM 11 C C1 JU9 . . . B 2 -15.621 -10.425 -58.753 1 106.64 ? C1 JU9 301 A 1 HETATM 12 O O1 JU9 . . . B 2 -17.007 -10.309 -59.061 1 103.45 ? O1 JU9 301 A 1 HETATM 13 C C2 JU9 . . . B 2 -17.488 -9.04 -59.175 1 97.71 ? C2 JU9 301 A 1 HETATM 14 C C3 JU9 . . . B 2 -18.089 -8.615 -60.35 1 98.6 ? C3 JU9 301 A 1 HETATM 15 P P1 JU9 . . . B 2 -20.212 -2.916 -60.238 1 88.55 ? P1 JU9 301 A 1 HETATM 16 O O2 JU9 . . . B 2 -19.258 -2.014 -59.518 1 89 ? O2 JU9 301 A 1 HETATM 17 O O3 JU9 . . . B 2 -21.452 -3.095 -59.415 1 99.37 -1 O3 JU9 301 A 1 HETATM 18 O O4 JU9 . . . B 2 -20.592 -2.256 -61.523 1 91.71 -1 O4 JU9 301 A 1 HETATM 19 S S1 JU9 . . . B 2 -17.573 -5.754 -56.831 1 84.72 ? S1 JU9 301 A 1 HETATM 20 C C9 JU9 . . . B 2 -17.216 -6.851 -55.524 1 84.41 ? C9 JU9 301 A 1 HETATM 21 C C11 JU9 . . . B 2 -16.095 -8.08 -54.029 1 82.88 ? C11 JU9 301 A 1 HETATM 22 C C12 JU9 . . . B 2 -14.946 -8.579 -53.357 1 85.88 ? C12 JU9 301 A 1 HETATM 23 O O5 JU9 . . . B 2 -14.923 -9.391 -52.425 1 87.38 ? O5 JU9 301 A 1 HETATM 24 N N2 JU9 . . . B 2 -13.772 -8.045 -53.873 1 83.46 ? N2 JU9 301 A 1 HETATM 25 C C14 JU9 . . . B 2 -15.955 -7.162 -55.074 1 83.77 ? C14 JU9 301 A 1 # _model_server_stats.io_time_ms 110 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 327 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 25 #