data_7ZSN # _model_server_result.job_id PGU9z-rGq-WNSO7jI3xrXA _model_server_result.datetime_utc '2024-11-14 17:59:34' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zsn # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7ZSN # _exptl.entry_id 7ZSN _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.198 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(~{E})-2-[5-bromanyl-2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenyl]ethenyl]phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZSN _cell.length_a 141.72 _cell.length_b 141.72 _cell.length_c 162.44 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZSN _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id metalc _struct_conn.details ? _struct_conn.id metalc1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NH1 _struct_conn.ptnr1_label_comp_id ARG _struct_conn.ptnr1_label_seq_id 58 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id ARG _struct_conn.ptnr1_auth_seq_id 58 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id E _struct_conn.ptnr2_label_atom_id W6 _struct_conn.ptnr2_label_comp_id TEW _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id TEW _struct_conn.ptnr2_auth_seq_id 304 _struct_conn.ptnr2_symmetry 4_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.904 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C14 H11 Br N3 O4 P S' _chem_comp.formula_weight 428.198 _chem_comp.id JSI _chem_comp.mon_nstd_flag . _chem_comp.name '[(~{E})-2-[5-bromanyl-2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenyl]ethenyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 JSI doub 173 n n BR1 C10 JSI sing 174 n n C14 P1 JSI sing 175 n n C14 C13 JSI doub 176 e n P1 O2 JSI sing 177 n n P1 O3 JSI sing 178 n n C9 C10 JSI doub 179 n y C9 C8 JSI sing 180 n y C10 C11 JSI sing 181 n y C13 C8 JSI sing 182 n n C8 C7 JSI doub 183 n y C11 C12 JSI doub 184 n y C7 C12 JSI sing 185 n y C7 S1 JSI sing 186 n n S1 C5 JSI sing 187 n n C5 C3 JSI sing 188 n y C5 C6 JSI doub 189 n y N2 C3 JSI sing 190 n n N2 C2 JSI doub 191 n n C3 C4 JSI doub 192 n y C6 N3 JSI sing 193 n y C2 N1 JSI sing 194 n n C4 N3 JSI sing 195 n y C4 C1 JSI sing 196 n n N1 C1 JSI sing 197 n n C1 O4 JSI doub 198 n n N1 H1 JSI sing 199 n n N3 H2 JSI sing 200 n n C6 H3 JSI sing 201 n n C13 H4 JSI sing 202 n n C2 H5 JSI sing 203 n n C9 H6 JSI sing 204 n n C11 H7 JSI sing 205 n n C12 H8 JSI sing 206 n n C14 H9 JSI sing 207 n n O2 H10 JSI sing 208 n n O3 H11 JSI sing 209 n n # _atom_sites.entry_id 7ZSN _atom_sites.fract_transf_matrix[1][1] 0.007056 _atom_sites.fract_transf_matrix[1][2] 0.004074 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008148 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006156 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JSI A 1 301 303 JSI LIG . C 3 TEW A 1 302 304 TEW TEW . D 3 TEW A 1 303 305 TEW TEW . E 3 TEW A 1 304 306 TEW TEW . F 4 SO4 A 1 305 1 SO4 SO4 . G 5 HOH A 1 401 17 HOH HOH . G 5 HOH A 2 402 3 HOH HOH . G 5 HOH A 3 403 40 HOH HOH . G 5 HOH A 4 404 36 HOH HOH . G 5 HOH A 5 405 1 HOH HOH . G 5 HOH A 6 406 19 HOH HOH . G 5 HOH A 7 407 30 HOH HOH . G 5 HOH A 8 408 18 HOH HOH . G 5 HOH A 9 409 38 HOH HOH . G 5 HOH A 10 410 15 HOH HOH . G 5 HOH A 11 411 12 HOH HOH . G 5 HOH A 12 412 5 HOH HOH . G 5 HOH A 13 413 27 HOH HOH . G 5 HOH A 14 414 23 HOH HOH . G 5 HOH A 15 415 25 HOH HOH . G 5 HOH A 16 416 4 HOH HOH . G 5 HOH A 17 417 13 HOH HOH . G 5 HOH A 18 418 24 HOH HOH . G 5 HOH A 19 419 22 HOH HOH . G 5 HOH A 20 420 35 HOH HOH . G 5 HOH A 21 421 21 HOH HOH . G 5 HOH A 22 422 31 HOH HOH . G 5 HOH A 23 423 8 HOH HOH . G 5 HOH A 24 424 6 HOH HOH . G 5 HOH A 25 425 14 HOH HOH . G 5 HOH A 26 426 7 HOH HOH . G 5 HOH A 27 427 33 HOH HOH . G 5 HOH A 28 428 26 HOH HOH . G 5 HOH A 29 429 37 HOH HOH . G 5 HOH A 30 430 20 HOH HOH . G 5 HOH A 31 431 2 HOH HOH . G 5 HOH A 32 432 11 HOH HOH . G 5 HOH A 33 433 29 HOH HOH . G 5 HOH A 34 434 32 HOH HOH . G 5 HOH A 35 435 34 HOH HOH . G 5 HOH A 36 436 39 HOH HOH . G 5 HOH A 37 437 10 HOH HOH . G 5 HOH A 38 438 9 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JSI . . . B 2 0.228 15.84 28.145 0.95 71.95 ? N1 JSI 301 A 1 HETATM 2 N N3 JSI . . . B 2 1.897 19.101 27.807 0.95 67.3 ? N3 JSI 301 A 1 HETATM 3 C C4 JSI . . . B 2 1.369 17.836 27.763 0.95 66.12 ? C4 JSI 301 A 1 HETATM 4 C C5 JSI . . . B 2 2.761 18.106 26.022 0.95 69.63 ? C5 JSI 301 A 1 HETATM 5 C C6 JSI . . . B 2 2.733 19.276 26.745 0.95 68.52 ? C6 JSI 301 A 1 HETATM 6 C C7 JSI . . . B 2 3.117 19.276 23.617 0.95 79.59 ? C7 JSI 301 A 1 HETATM 7 C C8 JSI . . . B 2 4.019 19.952 22.786 0.95 78.19 ? C8 JSI 301 A 1 HETATM 8 C C10 JSI . . . B 2 2.332 21.589 22.313 0.95 85.93 ? C10 JSI 301 A 1 HETATM 9 C C13 JSI . . . B 2 5.401 19.487 22.634 0.95 74.37 ? C13 JSI 301 A 1 HETATM 10 C C1 JSI . . . B 2 0.457 17.135 28.599 0.95 71.99 ? C1 JSI 301 A 1 HETATM 11 C C2 JSI . . . B 2 0.781 15.303 27.052 0.95 68.26 ? C2 JSI 301 A 1 HETATM 12 N N2 JSI . . . B 2 1.609 15.936 26.285 0.95 64.21 ? N2 JSI 301 A 1 HETATM 13 C C3 JSI . . . B 2 1.911 17.21 26.638 0.95 67.53 ? C3 JSI 301 A 1 HETATM 14 S S1 JSI . . . B 2 3.616 17.831 24.524 0.95 74.97 ? S1 JSI 301 A 1 HETATM 15 C C9 JSI . . . B 2 3.608 21.12 22.14 0.95 81.35 ? C9 JSI 301 A 1 HETATM 16 C C11 JSI . . . B 2 1.432 20.929 23.118 0.95 81.48 ? C11 JSI 301 A 1 HETATM 17 C C12 JSI . . . B 2 1.826 19.777 23.771 0.95 76.41 ? C12 JSI 301 A 1 HETATM 18 BR BR1 JSI . . . B 2 1.799 23.183 21.427 0.95 97.5 ? BR1 JSI 301 A 1 HETATM 19 C C14 JSI . . . B 2 6.061 19.226 21.522 0.95 64.31 ? C14 JSI 301 A 1 HETATM 20 P P1 JSI . . . B 2 7.701 18.715 21.677 0.95 56.53 ? P1 JSI 301 A 1 HETATM 21 O O1 JSI . . . B 2 8.41 18.646 20.377 0.95 59.56 -1 O1 JSI 301 A 1 HETATM 22 O O2 JSI . . . B 2 7.783 17.373 22.328 0.95 62.69 ? O2 JSI 301 A 1 HETATM 23 O O3 JSI . . . B 2 8.414 19.687 22.56 0.95 62.98 -1 O3 JSI 301 A 1 HETATM 24 O O4 JSI . . . B 2 -0.1 17.559 29.621 0.95 75.26 ? O4 JSI 301 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 24 #