data_7ZSP # _model_server_result.job_id I_vYSRJ4vMoN0iSyeeUyjA _model_server_result.datetime_utc '2024-11-14 17:54:26' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zsp # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 7ZSP # _exptl.entry_id 7ZSP _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 531.349 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(~{E})-2-[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]-6-[2,3,4,5,6-pentakis(fluoranyl)phenoxy]phenyl]ethenyl]phosphonic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZSP _cell.length_a 142.36 _cell.length_b 142.36 _cell.length_c 163.61 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZSP _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 0 0 0 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C20 H11 F5 N3 O5 P S' _chem_comp.formula_weight 531.349 _chem_comp.id JT3 _chem_comp.mon_nstd_flag . _chem_comp.name '[(~{E})-2-[2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]-6-[2,3,4,5,6-pentakis(fluoranyl)phenoxy]phenyl]ethenyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F2 C19 JT3 sing 173 n n F3 C18 JT3 sing 174 n n C19 C18 JT3 doub 175 n y C19 C20 JT3 sing 176 n y C18 C17 JT3 sing 177 n y F1 C20 JT3 sing 178 n n C20 C15 JT3 doub 179 n y C17 F4 JT3 sing 180 n n C17 C16 JT3 doub 181 n y C15 C16 JT3 sing 182 n y C15 O5 JT3 sing 183 n n C16 F5 JT3 sing 184 n n O1 P1 JT3 doub 185 n n O5 C9 JT3 sing 186 n n C14 P1 JT3 sing 187 n n C14 C13 JT3 doub 188 e n P1 O3 JT3 sing 189 n n P1 O2 JT3 sing 190 n n C9 C10 JT3 doub 191 n y C9 C8 JT3 sing 192 n y C10 C11 JT3 sing 193 n y C13 C8 JT3 sing 194 n n C8 C7 JT3 doub 195 n y C11 C12 JT3 doub 196 n y C7 C12 JT3 sing 197 n y C7 S1 JT3 sing 198 n n S1 C5 JT3 sing 199 n n C5 C3 JT3 sing 200 n y C5 C6 JT3 doub 201 n y N2 C3 JT3 sing 202 n n N2 C2 JT3 doub 203 n n C3 C4 JT3 doub 204 n y C2 N1 JT3 sing 205 n n C6 N3 JT3 sing 206 n y C4 N3 JT3 sing 207 n y C4 C1 JT3 sing 208 n n N1 C1 JT3 sing 209 n n C1 O4 JT3 doub 210 n n N1 H1 JT3 sing 211 n n N3 H2 JT3 sing 212 n n C6 H3 JT3 sing 213 n n C10 H4 JT3 sing 214 n n C13 H5 JT3 sing 215 n n C2 H6 JT3 sing 216 n n C11 H7 JT3 sing 217 n n C12 H8 JT3 sing 218 n n C14 H9 JT3 sing 219 n n O2 H10 JT3 sing 220 n n O3 H11 JT3 sing 221 n n # _atom_sites.entry_id 7ZSP _atom_sites.fract_transf_matrix[1][1] 0.007024 _atom_sites.fract_transf_matrix[1][2] 0.004056 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008111 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006112 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 JT3 A 1 301 301 JT3 LIG . C 3 TEW A 1 302 303 TEW TEW . D 3 TEW A 1 303 304 TEW TEW . E 3 TEW A 1 304 305 TEW TEW . F 4 NA A 1 305 1 NA NA . G 5 HOH A 1 401 7 HOH HOH . G 5 HOH A 2 402 47 HOH HOH . G 5 HOH A 3 403 12 HOH HOH . G 5 HOH A 4 404 13 HOH HOH . G 5 HOH A 5 405 60 HOH HOH . G 5 HOH A 6 406 1 HOH HOH . G 5 HOH A 7 407 23 HOH HOH . G 5 HOH A 8 408 77 HOH HOH . G 5 HOH A 9 409 69 HOH HOH . G 5 HOH A 10 410 55 HOH HOH . G 5 HOH A 11 411 14 HOH HOH . G 5 HOH A 12 412 9 HOH HOH . G 5 HOH A 13 413 72 HOH HOH . G 5 HOH A 14 414 11 HOH HOH . G 5 HOH A 15 415 68 HOH HOH . G 5 HOH A 16 416 65 HOH HOH . G 5 HOH A 17 417 43 HOH HOH . G 5 HOH A 18 418 19 HOH HOH . G 5 HOH A 19 419 61 HOH HOH . G 5 HOH A 20 420 50 HOH HOH . G 5 HOH A 21 421 63 HOH HOH . G 5 HOH A 22 422 21 HOH HOH . G 5 HOH A 23 423 10 HOH HOH . G 5 HOH A 24 424 27 HOH HOH . G 5 HOH A 25 425 2 HOH HOH . G 5 HOH A 26 426 51 HOH HOH . G 5 HOH A 27 427 66 HOH HOH . G 5 HOH A 28 428 20 HOH HOH . G 5 HOH A 29 429 17 HOH HOH . G 5 HOH A 30 430 62 HOH HOH . G 5 HOH A 31 431 75 HOH HOH . G 5 HOH A 32 432 42 HOH HOH . G 5 HOH A 33 433 18 HOH HOH . G 5 HOH A 34 434 67 HOH HOH . G 5 HOH A 35 435 78 HOH HOH . G 5 HOH A 36 436 76 HOH HOH . G 5 HOH A 37 437 41 HOH HOH . G 5 HOH A 38 438 4 HOH HOH . G 5 HOH A 39 439 56 HOH HOH . G 5 HOH A 40 440 6 HOH HOH . G 5 HOH A 41 441 71 HOH HOH . G 5 HOH A 42 442 74 HOH HOH . G 5 HOH A 43 443 73 HOH HOH . G 5 HOH A 44 444 70 HOH HOH . G 5 HOH A 45 445 54 HOH HOH . G 5 HOH A 46 446 79 HOH HOH . G 5 HOH A 47 447 5 HOH HOH . G 5 HOH A 48 448 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JT3 . . . B 2 0.305 15.974 -53.648 1 58.11 ? N1 JT3 301 A 1 HETATM 2 N N3 JT3 . . . B 2 2.052 19.199 -53.682 1 55.68 ? N3 JT3 301 A 1 HETATM 3 C C4 JT3 . . . B 2 1.522 17.945 -53.818 1 54.21 ? C4 JT3 301 A 1 HETATM 4 C C5 JT3 . . . B 2 3.03 18.3 -55.445 1 54.17 ? C5 JT3 301 A 1 HETATM 5 C C6 JT3 . . . B 2 2.956 19.426 -54.671 1 54.05 ? C6 JT3 301 A 1 HETATM 6 C C7 JT3 . . . B 2 3.133 19.138 -58.008 1 56.39 ? C7 JT3 301 A 1 HETATM 7 C C8 JT3 . . . B 2 3.821 19.913 -58.944 1 57.12 ? C8 JT3 301 A 1 HETATM 8 C C10 JT3 . . . B 2 1.739 20.811 -59.751 1 57.05 ? C10 JT3 301 A 1 HETATM 9 C C13 JT3 . . . B 2 5.272 19.827 -59.093 1 55.71 ? C13 JT3 301 A 1 HETATM 10 C C15 JT3 . . . B 2 3.343 22.234 -61.697 1 70.11 ? C15 JT3 301 A 1 HETATM 11 C C17 JT3 . . . B 2 2.143 24.153 -62.481 1 74.89 ? C17 JT3 301 A 1 HETATM 12 C C20 JT3 . . . B 2 3.538 21.848 -63.002 1 69.39 ? C20 JT3 301 A 1 HETATM 13 C C1 JT3 . . . B 2 0.534 17.227 -53.094 1 59.42 ? C1 JT3 301 A 1 HETATM 14 C C2 JT3 . . . B 2 0.926 15.49 -54.727 1 56.19 ? C2 JT3 301 A 1 HETATM 15 N N2 JT3 . . . B 2 1.811 16.142 -55.401 1 51.81 ? N2 JT3 301 A 1 HETATM 16 C C3 JT3 . . . B 2 2.122 17.381 -54.945 1 58.52 ? C3 JT3 301 A 1 HETATM 17 S S1 JT3 . . . B 2 4.011 18.099 -56.87 1 55.82 ? S1 JT3 301 A 1 HETATM 18 C C9 JT3 . . . B 2 3.115 20.729 -59.816 1 55.85 ? C9 JT3 301 A 1 HETATM 19 C C11 JT3 . . . B 2 1.066 20.065 -58.808 1 63.07 ? C11 JT3 301 A 1 HETATM 20 C C12 JT3 . . . B 2 1.75 19.236 -57.937 1 60.84 ? C12 JT3 301 A 1 HETATM 21 C C14 JT3 . . . B 2 5.896 18.99 -59.9 1 56.43 ? C14 JT3 301 A 1 HETATM 22 P P1 JT3 . . . B 2 7.603 18.68 -59.841 1 60.16 ? P1 JT3 301 A 1 HETATM 23 O O1 JT3 . . . B 2 8.149 18.619 -61.224 1 55.56 -1 O1 JT3 301 A 1 HETATM 24 O O2 JT3 . . . B 2 8.268 19.8 -59.053 1 61.1 -1 O2 JT3 301 A 1 HETATM 25 O O3 JT3 . . . B 2 7.899 17.321 -59.282 1 61.59 ? O3 JT3 301 A 1 HETATM 26 O O4 JT3 . . . B 2 -0.098 17.608 -52.095 1 58.24 ? O4 JT3 301 A 1 HETATM 27 O O5 JT3 . . . B 2 3.886 21.439 -60.725 1 61.5 ? O5 JT3 301 A 1 HETATM 28 C C16 JT3 . . . B 2 2.649 23.401 -61.439 1 73.77 ? C16 JT3 301 A 1 HETATM 29 C C18 JT3 . . . B 2 2.349 23.759 -63.778 1 70.76 ? C18 JT3 301 A 1 HETATM 30 C C19 JT3 . . . B 2 3.048 22.609 -64.042 1 71.07 ? C19 JT3 301 A 1 HETATM 31 F F1 JT3 . . . B 2 4.238 20.733 -63.257 1 70.59 ? F1 JT3 301 A 1 HETATM 32 F F2 JT3 . . . B 2 3.27 22.252 -65.316 1 69.04 ? F2 JT3 301 A 1 HETATM 33 F F3 JT3 . . . B 2 1.871 24.487 -64.795 1 81.43 ? F3 JT3 301 A 1 HETATM 34 F F4 JT3 . . . B 2 1.443 25.27 -62.23 1 86.34 ? F4 JT3 301 A 1 HETATM 35 F F5 JT3 . . . B 2 2.425 23.795 -60.17 1 76.18 ? F5 JT3 301 A 1 # _model_server_stats.io_time_ms 7 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 221 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 35 #