data_7ZSR # _model_server_result.job_id mI04hMyJ6W68grGlfaBg2A _model_server_result.datetime_utc '2024-11-14 18:12:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zsr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":301}' # _entry.id 7ZSR # _exptl.entry_id 7ZSR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 428.198 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(~{E})-2-[5-bromanyl-2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenyl]ethenyl]phosphonic acid' _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 94.47 _cell.angle_gamma 90 _cell.entry_id 7ZSR _cell.length_a 50.528 _cell.length_b 84.54 _cell.length_c 93.879 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZSR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 G N N ? 2 I N N # _chem_comp.formula 'C14 H11 Br N3 O4 P S' _chem_comp.formula_weight 428.198 _chem_comp.id JSI _chem_comp.mon_nstd_flag . _chem_comp.name '[(~{E})-2-[5-bromanyl-2-[(4-oxidanylidene-3,5-dihydropyrrolo[3,2-d]pyrimidin-7-yl)sulfanyl]phenyl]ethenyl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O1 P1 JSI doub 166 n n BR1 C10 JSI sing 167 n n C14 P1 JSI sing 168 n n C14 C13 JSI doub 169 e n P1 O2 JSI sing 170 n n P1 O3 JSI sing 171 n n C9 C10 JSI doub 172 n y C9 C8 JSI sing 173 n y C10 C11 JSI sing 174 n y C13 C8 JSI sing 175 n n C8 C7 JSI doub 176 n y C11 C12 JSI doub 177 n y C7 C12 JSI sing 178 n y C7 S1 JSI sing 179 n n S1 C5 JSI sing 180 n n C5 C3 JSI sing 181 n y C5 C6 JSI doub 182 n y N2 C3 JSI sing 183 n n N2 C2 JSI doub 184 n n C3 C4 JSI doub 185 n y C6 N3 JSI sing 186 n y C2 N1 JSI sing 187 n n C4 N3 JSI sing 188 n y C4 C1 JSI sing 189 n n N1 C1 JSI sing 190 n n C1 O4 JSI doub 191 n n N1 H1 JSI sing 192 n n N3 H2 JSI sing 193 n n C6 H3 JSI sing 194 n n C13 H4 JSI sing 195 n n C2 H5 JSI sing 196 n n C9 H6 JSI sing 197 n n C11 H7 JSI sing 198 n n C12 H8 JSI sing 199 n n C14 H9 JSI sing 200 n n O2 H10 JSI sing 201 n n O3 H11 JSI sing 202 n n # _atom_sites.entry_id 7ZSR _atom_sites.fract_transf_matrix[1][1] 0.019791 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001546 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011829 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010684 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 JSI A 1 301 301 JSI LIG . E 3 ACT A 1 302 302 ACT ACT . F 3 ACT A 1 303 302 ACT ACT . G 2 JSI B 1 301 301 JSI LIG . H 3 ACT B 1 302 1 ACT ACT . I 2 JSI C 1 301 301 JSI LIG . J 4 HOH A 1 401 94 HOH HOH . J 4 HOH A 2 402 177 HOH HOH . J 4 HOH A 3 403 174 HOH HOH . J 4 HOH A 4 404 89 HOH HOH . J 4 HOH A 5 405 255 HOH HOH . J 4 HOH A 6 406 165 HOH HOH . J 4 HOH A 7 407 187 HOH HOH . J 4 HOH A 8 408 96 HOH HOH . J 4 HOH A 9 409 99 HOH HOH . J 4 HOH A 10 410 232 HOH HOH . J 4 HOH A 11 411 207 HOH HOH . J 4 HOH A 12 412 175 HOH HOH . J 4 HOH A 13 413 17 HOH HOH . J 4 HOH A 14 414 1 HOH HOH . J 4 HOH A 15 415 264 HOH HOH . J 4 HOH A 16 416 56 HOH HOH . J 4 HOH A 17 417 191 HOH HOH . J 4 HOH A 18 418 225 HOH HOH . J 4 HOH A 19 419 67 HOH HOH . J 4 HOH A 20 420 30 HOH HOH . J 4 HOH A 21 421 90 HOH HOH . J 4 HOH A 22 422 19 HOH HOH . J 4 HOH A 23 423 219 HOH HOH . J 4 HOH A 24 424 108 HOH HOH . J 4 HOH A 25 425 227 HOH HOH . J 4 HOH A 26 426 169 HOH HOH . J 4 HOH A 27 427 222 HOH HOH . J 4 HOH A 28 428 24 HOH HOH . J 4 HOH A 29 429 66 HOH HOH . J 4 HOH A 30 430 257 HOH HOH . J 4 HOH A 31 431 258 HOH HOH . J 4 HOH A 32 432 267 HOH HOH . J 4 HOH A 33 433 142 HOH HOH . J 4 HOH A 34 434 75 HOH HOH . J 4 HOH A 35 435 204 HOH HOH . J 4 HOH A 36 436 181 HOH HOH . J 4 HOH A 37 437 47 HOH HOH . J 4 HOH A 38 438 198 HOH HOH . J 4 HOH A 39 439 3 HOH HOH . J 4 HOH A 40 440 164 HOH HOH . J 4 HOH A 41 441 221 HOH HOH . J 4 HOH A 42 442 162 HOH HOH . J 4 HOH A 43 443 218 HOH HOH . J 4 HOH A 44 444 141 HOH HOH . J 4 HOH A 45 445 36 HOH HOH . J 4 HOH A 46 446 134 HOH HOH . J 4 HOH A 47 447 132 HOH HOH . J 4 HOH A 48 448 13 HOH HOH . J 4 HOH A 49 449 167 HOH HOH . J 4 HOH A 50 450 95 HOH HOH . J 4 HOH A 51 451 71 HOH HOH . J 4 HOH A 52 452 209 HOH HOH . J 4 HOH A 53 453 210 HOH HOH . J 4 HOH A 54 454 189 HOH HOH . J 4 HOH A 55 455 254 HOH HOH . J 4 HOH A 56 456 27 HOH HOH . J 4 HOH A 57 457 256 HOH HOH . J 4 HOH A 58 458 42 HOH HOH . J 4 HOH A 59 459 178 HOH HOH . J 4 HOH A 60 460 188 HOH HOH . J 4 HOH A 61 461 78 HOH HOH . J 4 HOH A 62 462 193 HOH HOH . J 4 HOH A 63 463 23 HOH HOH . J 4 HOH A 64 464 249 HOH HOH . J 4 HOH A 65 465 92 HOH HOH . J 4 HOH A 66 466 224 HOH HOH . J 4 HOH A 67 467 238 HOH HOH . J 4 HOH A 68 468 168 HOH HOH . J 4 HOH A 69 469 15 HOH HOH . J 4 HOH A 70 470 100 HOH HOH . J 4 HOH A 71 471 272 HOH HOH . J 4 HOH A 72 472 184 HOH HOH . J 4 HOH A 73 473 98 HOH HOH . J 4 HOH A 74 474 260 HOH HOH . J 4 HOH A 75 475 14 HOH HOH . J 4 HOH A 76 476 74 HOH HOH . J 4 HOH A 77 477 20 HOH HOH . J 4 HOH A 78 478 146 HOH HOH . J 4 HOH A 79 479 138 HOH HOH . J 4 HOH A 80 480 223 HOH HOH . J 4 HOH A 81 481 55 HOH HOH . J 4 HOH A 82 482 166 HOH HOH . J 4 HOH A 83 483 72 HOH HOH . J 4 HOH A 84 484 206 HOH HOH . J 4 HOH A 85 485 180 HOH HOH . J 4 HOH A 86 486 220 HOH HOH . J 4 HOH A 87 487 211 HOH HOH . J 4 HOH A 88 488 261 HOH HOH . J 4 HOH A 89 489 208 HOH HOH . J 4 HOH A 90 490 192 HOH HOH . J 4 HOH A 91 491 262 HOH HOH . J 4 HOH A 92 492 91 HOH HOH . J 4 HOH A 93 493 179 HOH HOH . J 4 HOH A 94 494 176 HOH HOH . J 4 HOH A 95 495 212 HOH HOH . J 4 HOH A 96 496 259 HOH HOH . J 4 HOH A 97 497 265 HOH HOH . K 4 HOH B 1 401 139 HOH HOH . K 4 HOH B 2 402 240 HOH HOH . K 4 HOH B 3 403 102 HOH HOH . K 4 HOH B 4 404 50 HOH HOH . K 4 HOH B 5 405 136 HOH HOH . K 4 HOH B 6 406 103 HOH HOH . K 4 HOH B 7 407 11 HOH HOH . K 4 HOH B 8 408 87 HOH HOH . K 4 HOH B 9 409 173 HOH HOH . K 4 HOH B 10 410 135 HOH HOH . K 4 HOH B 11 411 214 HOH HOH . K 4 HOH B 12 412 73 HOH HOH . K 4 HOH B 13 413 49 HOH HOH . K 4 HOH B 14 414 2 HOH HOH . K 4 HOH B 15 415 109 HOH HOH . K 4 HOH B 16 416 82 HOH HOH . K 4 HOH B 17 417 26 HOH HOH . K 4 HOH B 18 418 172 HOH HOH . K 4 HOH B 19 419 80 HOH HOH . K 4 HOH B 20 420 65 HOH HOH . K 4 HOH B 21 421 266 HOH HOH . K 4 HOH B 22 422 133 HOH HOH . K 4 HOH B 23 423 61 HOH HOH . K 4 HOH B 24 424 48 HOH HOH . K 4 HOH B 25 425 22 HOH HOH . K 4 HOH B 26 426 52 HOH HOH . K 4 HOH B 27 427 6 HOH HOH . K 4 HOH B 28 428 241 HOH HOH . K 4 HOH B 29 429 247 HOH HOH . K 4 HOH B 30 430 29 HOH HOH . K 4 HOH B 31 431 84 HOH HOH . K 4 HOH B 32 432 43 HOH HOH . K 4 HOH B 33 433 170 HOH HOH . K 4 HOH B 34 434 205 HOH HOH . K 4 HOH B 35 435 244 HOH HOH . K 4 HOH B 36 436 32 HOH HOH . K 4 HOH B 37 437 70 HOH HOH . K 4 HOH B 38 438 111 HOH HOH . K 4 HOH B 39 439 112 HOH HOH . K 4 HOH B 40 440 8 HOH HOH . K 4 HOH B 41 441 34 HOH HOH . K 4 HOH B 42 442 37 HOH HOH . K 4 HOH B 43 443 54 HOH HOH . K 4 HOH B 44 444 16 HOH HOH . K 4 HOH B 45 445 203 HOH HOH . K 4 HOH B 46 446 101 HOH HOH . K 4 HOH B 47 447 79 HOH HOH . K 4 HOH B 48 448 81 HOH HOH . K 4 HOH B 49 449 245 HOH HOH . K 4 HOH B 50 450 171 HOH HOH . K 4 HOH B 51 451 246 HOH HOH . K 4 HOH B 52 452 233 HOH HOH . K 4 HOH B 53 453 113 HOH HOH . K 4 HOH B 54 454 273 HOH HOH . K 4 HOH B 55 455 151 HOH HOH . K 4 HOH B 56 456 116 HOH HOH . K 4 HOH B 57 457 10 HOH HOH . K 4 HOH B 58 458 57 HOH HOH . K 4 HOH B 59 459 31 HOH HOH . K 4 HOH B 60 460 190 HOH HOH . K 4 HOH B 61 461 110 HOH HOH . K 4 HOH B 62 462 201 HOH HOH . K 4 HOH B 63 463 199 HOH HOH . K 4 HOH B 64 464 250 HOH HOH . K 4 HOH B 65 465 271 HOH HOH . K 4 HOH B 66 466 202 HOH HOH . K 4 HOH B 67 467 248 HOH HOH . K 4 HOH B 68 468 104 HOH HOH . L 4 HOH C 1 401 127 HOH HOH . L 4 HOH C 2 402 148 HOH HOH . L 4 HOH C 3 403 68 HOH HOH . L 4 HOH C 4 404 216 HOH HOH . L 4 HOH C 5 405 83 HOH HOH . L 4 HOH C 6 406 86 HOH HOH . L 4 HOH C 7 407 270 HOH HOH . L 4 HOH C 8 408 130 HOH HOH . L 4 HOH C 9 409 69 HOH HOH . L 4 HOH C 10 410 229 HOH HOH . L 4 HOH C 11 411 64 HOH HOH . L 4 HOH C 12 412 58 HOH HOH . L 4 HOH C 13 413 215 HOH HOH . L 4 HOH C 14 414 156 HOH HOH . L 4 HOH C 15 415 122 HOH HOH . L 4 HOH C 16 416 119 HOH HOH . L 4 HOH C 17 417 25 HOH HOH . L 4 HOH C 18 418 183 HOH HOH . L 4 HOH C 19 419 143 HOH HOH . L 4 HOH C 20 420 231 HOH HOH . L 4 HOH C 21 421 129 HOH HOH . L 4 HOH C 22 422 155 HOH HOH . L 4 HOH C 23 423 35 HOH HOH . L 4 HOH C 24 424 40 HOH HOH . L 4 HOH C 25 425 128 HOH HOH . L 4 HOH C 26 426 228 HOH HOH . L 4 HOH C 27 427 7 HOH HOH . L 4 HOH C 28 428 45 HOH HOH . L 4 HOH C 29 429 226 HOH HOH . L 4 HOH C 30 430 46 HOH HOH . L 4 HOH C 31 431 5 HOH HOH . L 4 HOH C 32 432 114 HOH HOH . L 4 HOH C 33 433 235 HOH HOH . L 4 HOH C 34 434 118 HOH HOH . L 4 HOH C 35 435 121 HOH HOH . L 4 HOH C 36 436 158 HOH HOH . L 4 HOH C 37 437 28 HOH HOH . L 4 HOH C 38 438 18 HOH HOH . L 4 HOH C 39 439 38 HOH HOH . L 4 HOH C 40 440 159 HOH HOH . L 4 HOH C 41 441 120 HOH HOH . L 4 HOH C 42 442 106 HOH HOH . L 4 HOH C 43 443 4 HOH HOH . L 4 HOH C 44 444 62 HOH HOH . L 4 HOH C 45 445 60 HOH HOH . L 4 HOH C 46 446 126 HOH HOH . L 4 HOH C 47 447 39 HOH HOH . L 4 HOH C 48 448 234 HOH HOH . L 4 HOH C 49 449 161 HOH HOH . L 4 HOH C 50 450 41 HOH HOH . L 4 HOH C 51 451 33 HOH HOH . L 4 HOH C 52 452 124 HOH HOH . L 4 HOH C 53 453 268 HOH HOH . L 4 HOH C 54 454 213 HOH HOH . L 4 HOH C 55 455 97 HOH HOH . L 4 HOH C 56 456 230 HOH HOH . L 4 HOH C 57 457 160 HOH HOH . L 4 HOH C 58 458 154 HOH HOH . L 4 HOH C 59 459 12 HOH HOH . L 4 HOH C 60 460 140 HOH HOH . L 4 HOH C 61 461 217 HOH HOH . L 4 HOH C 62 462 123 HOH HOH . L 4 HOH C 63 463 44 HOH HOH . L 4 HOH C 64 464 51 HOH HOH . L 4 HOH C 65 465 239 HOH HOH . L 4 HOH C 66 466 243 HOH HOH . L 4 HOH C 67 467 21 HOH HOH . L 4 HOH C 68 468 131 HOH HOH . L 4 HOH C 69 469 105 HOH HOH . L 4 HOH C 70 470 194 HOH HOH . L 4 HOH C 71 471 150 HOH HOH . L 4 HOH C 72 472 147 HOH HOH . L 4 HOH C 73 473 137 HOH HOH . L 4 HOH C 74 474 59 HOH HOH . L 4 HOH C 75 475 182 HOH HOH . L 4 HOH C 76 476 152 HOH HOH . L 4 HOH C 77 477 153 HOH HOH . L 4 HOH C 78 478 149 HOH HOH . L 4 HOH C 79 479 76 HOH HOH . L 4 HOH C 80 480 93 HOH HOH . L 4 HOH C 81 481 117 HOH HOH . L 4 HOH C 82 482 125 HOH HOH . L 4 HOH C 83 483 115 HOH HOH . L 4 HOH C 84 484 251 HOH HOH . L 4 HOH C 85 485 145 HOH HOH . L 4 HOH C 86 486 157 HOH HOH . L 4 HOH C 87 487 195 HOH HOH . L 4 HOH C 88 488 253 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JSI . . . D 2 -1.407 32.903 29.464 0.95 25.86 ? N1 JSI 301 A 1 HETATM 2 N N3 JSI . . . D 2 -2.494 29.818 31.131 0.95 25.88 ? N3 JSI 301 A 1 HETATM 3 C C4 JSI . . . D 2 -1.909 30.886 30.51 0.95 24.76 ? C4 JSI 301 A 1 HETATM 4 C C5 JSI . . . D 2 -0.344 29.368 30.984 0.95 28.12 ? C5 JSI 301 A 1 HETATM 5 C C6 JSI . . . D 2 -1.553 28.884 31.412 0.95 26.78 ? C6 JSI 301 A 1 HETATM 6 C C7 JSI . . . D 2 1.407 28.387 32.871 0.95 37.76 ? C7 JSI 301 A 1 HETATM 7 C C8 JSI . . . D 2 2.605 27.81 33.276 0.95 43.02 ? C8 JSI 301 A 1 HETATM 8 C C10 JSI . . . D 2 1.935 27.902 35.558 0.95 48.25 ? C10 JSI 301 A 1 HETATM 9 C C13 JSI . . . D 2 3.493 27.163 32.341 0.95 42.96 ? C13 JSI 301 A 1 HETATM 10 C C1 JSI . . . D 2 -2.419 32.11 29.993 0.95 25.26 ? C1 JSI 301 A 1 HETATM 11 C C2 JSI . . . D 2 -0.112 32.56 29.395 0.95 25.11 ? C2 JSI 301 A 1 HETATM 12 N N2 JSI . . . D 2 0.353 31.451 29.841 0.95 26.13 ? N2 JSI 301 A 1 HETATM 13 C C3 JSI . . . D 2 -0.545 30.607 30.427 0.95 27.23 ? C3 JSI 301 A 1 HETATM 14 S S1 JSI . . . D 2 1.19 28.561 31.12 0.95 31.25 ? S1 JSI 301 A 1 HETATM 15 C C9 JSI . . . D 2 2.813 27.482 34.611 0.95 46.76 ? C9 JSI 301 A 1 HETATM 16 C C11 JSI . . . D 2 0.792 28.59 35.203 0.95 41.45 ? C11 JSI 301 A 1 HETATM 17 C C12 JSI . . . D 2 0.532 28.824 33.862 0.95 38.72 ? C12 JSI 301 A 1 HETATM 18 BR BR1 JSI . . . D 2 2.359 27.504 37.37 0.95 53.43 ? BR1 JSI 301 A 1 HETATM 19 C C14 JSI . . . D 2 3.367 25.875 32.27 0.95 42.02 ? C14 JSI 301 A 1 HETATM 20 P P1 JSI . . . D 2 4.113 24.714 31.344 0.95 39.74 ? P1 JSI 301 A 1 HETATM 21 O O1 JSI . . . D 2 4.128 25.142 29.891 0.95 49.19 -1 O1 JSI 301 A 1 HETATM 22 O O2 JSI . . . D 2 3.159 23.578 31.464 0.95 41.71 ? O2 JSI 301 A 1 HETATM 23 O O3 JSI . . . D 2 5.464 24.353 31.924 0.95 41.13 -1 O3 JSI 301 A 1 HETATM 24 O O4 JSI . . . D 2 -3.591 32.507 30.015 0.95 24.51 ? O4 JSI 301 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 287 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 24 #