data_7ZT4 # _model_server_result.job_id a0WHMRter1DL_g5Kh2lWZw _model_server_result.datetime_utc '2024-11-28 18:21:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zt4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":301}' # _entry.id 7ZT4 # _exptl.entry_id 7ZT4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 177.163 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-azanyl-6-methyl-3~{H}-pteridin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZT4 _cell.length_a 91.71 _cell.length_b 104.39 _cell.length_c 117.97 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZT4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.035 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf4 C SG CYS 24 D CYS 24 1_555 C SG CYS 90 D CYS 90 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.973 ? disulf ? disulf5 C SG CYS 134 D CYS 134 1_555 C SG CYS 184 D CYS 184 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.046 ? disulf ? disulf6 C SG CYS 159 D CYS 159 1_555 D SG CYS 169 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? disulf ? disulf7 D SG CYS 23 E CYS 23 1_555 D SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.972 ? disulf ? disulf8 D SG CYS 143 E CYS 143 1_555 D SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? covale ? covale1 A NZ LYS 44 A LYS 43 1_555 E C9 JSO . A JSO 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.262 ? # _chem_comp.formula 'C7 H7 N5 O' _chem_comp.formula_weight 177.163 _chem_comp.id JSO _chem_comp.mon_nstd_flag . _chem_comp.name 2-azanyl-6-methyl-3~{H}-pteridin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C9 C6 JSO sing 173 n n C6 N5 JSO doub 174 n y C6 C7 JSO sing 175 n y N5 C4A JSO sing 176 n y O4 C4 JSO doub 177 n n C7 N8 JSO doub 178 n y C4A C4 JSO sing 179 n n C4A C8A JSO doub 180 n y C4 N3 JSO sing 181 n n N8 C8A JSO sing 182 n y C8A N1 JSO sing 183 n n N3 C2 JSO sing 184 n n N1 C2 JSO doub 185 n n C2 N2 JSO sing 186 n n C9 H1 JSO sing 187 n n C9 H2 JSO sing 188 n n C9 H3 JSO sing 189 n n N3 H4 JSO sing 190 n n N2 H5 JSO sing 191 n n N2 H6 JSO sing 192 n n C7 H7 JSO sing 193 n n # _atom_sites.entry_id 7ZT4 _atom_sites.fract_transf_matrix[1][1] 0.010904 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009579 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008477 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 JSO A 1 301 301 JSO 6FP . F 6 HOH A 1 401 22 HOH HOH . F 6 HOH A 2 402 106 HOH HOH . F 6 HOH A 3 403 87 HOH HOH . F 6 HOH A 4 404 157 HOH HOH . F 6 HOH A 5 405 212 HOH HOH . F 6 HOH A 6 406 219 HOH HOH . F 6 HOH A 7 407 79 HOH HOH . F 6 HOH A 8 408 213 HOH HOH . F 6 HOH A 9 409 57 HOH HOH . F 6 HOH A 10 410 239 HOH HOH . F 6 HOH A 11 411 166 HOH HOH . F 6 HOH A 12 412 41 HOH HOH . F 6 HOH A 13 413 10 HOH HOH . F 6 HOH A 14 414 86 HOH HOH . F 6 HOH A 15 415 3 HOH HOH . F 6 HOH A 16 416 224 HOH HOH . F 6 HOH A 17 417 164 HOH HOH . F 6 HOH A 18 418 194 HOH HOH . F 6 HOH A 19 419 237 HOH HOH . F 6 HOH A 20 420 6 HOH HOH . F 6 HOH A 21 421 9 HOH HOH . F 6 HOH A 22 422 39 HOH HOH . F 6 HOH A 23 423 54 HOH HOH . F 6 HOH A 24 424 73 HOH HOH . F 6 HOH A 25 425 229 HOH HOH . F 6 HOH A 26 426 44 HOH HOH . F 6 HOH A 27 427 227 HOH HOH . F 6 HOH A 28 428 161 HOH HOH . F 6 HOH A 29 429 162 HOH HOH . F 6 HOH A 30 430 1 HOH HOH . F 6 HOH A 31 431 36 HOH HOH . F 6 HOH A 32 432 130 HOH HOH . F 6 HOH A 33 433 31 HOH HOH . F 6 HOH A 34 434 183 HOH HOH . F 6 HOH A 35 435 149 HOH HOH . F 6 HOH A 36 436 16 HOH HOH . F 6 HOH A 37 437 40 HOH HOH . F 6 HOH A 38 438 97 HOH HOH . F 6 HOH A 39 439 223 HOH HOH . F 6 HOH A 40 440 196 HOH HOH . F 6 HOH A 41 441 91 HOH HOH . F 6 HOH A 42 442 37 HOH HOH . F 6 HOH A 43 443 147 HOH HOH . F 6 HOH A 44 444 20 HOH HOH . F 6 HOH A 45 445 11 HOH HOH . F 6 HOH A 46 446 160 HOH HOH . F 6 HOH A 47 447 108 HOH HOH . F 6 HOH A 48 448 173 HOH HOH . F 6 HOH A 49 449 137 HOH HOH . F 6 HOH A 50 450 4 HOH HOH . F 6 HOH A 51 451 148 HOH HOH . F 6 HOH A 52 452 128 HOH HOH . F 6 HOH A 53 453 103 HOH HOH . F 6 HOH A 54 454 80 HOH HOH . F 6 HOH A 55 455 14 HOH HOH . F 6 HOH A 56 456 129 HOH HOH . F 6 HOH A 57 457 62 HOH HOH . F 6 HOH A 58 458 228 HOH HOH . F 6 HOH A 59 459 141 HOH HOH . F 6 HOH A 60 460 126 HOH HOH . F 6 HOH A 61 461 107 HOH HOH . F 6 HOH A 62 462 155 HOH HOH . F 6 HOH A 63 463 109 HOH HOH . F 6 HOH A 64 464 159 HOH HOH . F 6 HOH A 65 465 138 HOH HOH . F 6 HOH A 66 466 8 HOH HOH . F 6 HOH A 67 467 105 HOH HOH . F 6 HOH A 68 468 199 HOH HOH . G 6 HOH B 1 101 156 HOH HOH . G 6 HOH B 2 102 207 HOH HOH . G 6 HOH B 3 103 153 HOH HOH . G 6 HOH B 4 104 99 HOH HOH . G 6 HOH B 5 105 46 HOH HOH . G 6 HOH B 6 106 35 HOH HOH . G 6 HOH B 7 107 218 HOH HOH . G 6 HOH B 8 108 185 HOH HOH . G 6 HOH B 9 109 32 HOH HOH . G 6 HOH B 10 110 184 HOH HOH . G 6 HOH B 11 111 231 HOH HOH . G 6 HOH B 12 112 206 HOH HOH . G 6 HOH B 13 113 132 HOH HOH . G 6 HOH B 14 114 222 HOH HOH . G 6 HOH B 15 115 186 HOH HOH . G 6 HOH B 16 116 69 HOH HOH . G 6 HOH B 17 117 210 HOH HOH . G 6 HOH B 18 118 47 HOH HOH . G 6 HOH B 19 119 187 HOH HOH . G 6 HOH B 20 120 133 HOH HOH . G 6 HOH B 21 121 118 HOH HOH . G 6 HOH B 22 122 7 HOH HOH . G 6 HOH B 23 123 127 HOH HOH . G 6 HOH B 24 124 90 HOH HOH . G 6 HOH B 25 125 135 HOH HOH . G 6 HOH B 26 126 243 HOH HOH . G 6 HOH B 27 127 136 HOH HOH . H 6 HOH D 1 301 154 HOH HOH . H 6 HOH D 2 302 56 HOH HOH . H 6 HOH D 3 303 92 HOH HOH . H 6 HOH D 4 304 18 HOH HOH . H 6 HOH D 5 305 197 HOH HOH . H 6 HOH D 6 306 29 HOH HOH . H 6 HOH D 7 307 63 HOH HOH . H 6 HOH D 8 308 172 HOH HOH . H 6 HOH D 9 309 217 HOH HOH . H 6 HOH D 10 310 163 HOH HOH . H 6 HOH D 11 311 123 HOH HOH . H 6 HOH D 12 312 171 HOH HOH . H 6 HOH D 13 313 38 HOH HOH . H 6 HOH D 14 314 220 HOH HOH . H 6 HOH D 15 315 182 HOH HOH . H 6 HOH D 16 316 177 HOH HOH . H 6 HOH D 17 317 23 HOH HOH . H 6 HOH D 18 318 67 HOH HOH . H 6 HOH D 19 319 169 HOH HOH . H 6 HOH D 20 320 170 HOH HOH . H 6 HOH D 21 321 175 HOH HOH . H 6 HOH D 22 322 95 HOH HOH . H 6 HOH D 23 323 17 HOH HOH . H 6 HOH D 24 324 50 HOH HOH . H 6 HOH D 25 325 49 HOH HOH . H 6 HOH D 26 326 221 HOH HOH . H 6 HOH D 27 327 176 HOH HOH . H 6 HOH D 28 328 58 HOH HOH . H 6 HOH D 29 329 30 HOH HOH . H 6 HOH D 30 330 178 HOH HOH . H 6 HOH D 31 331 48 HOH HOH . H 6 HOH D 32 332 124 HOH HOH . H 6 HOH D 33 333 158 HOH HOH . H 6 HOH D 34 334 13 HOH HOH . H 6 HOH D 35 335 238 HOH HOH . H 6 HOH D 36 336 100 HOH HOH . H 6 HOH D 37 337 174 HOH HOH . H 6 HOH D 38 338 122 HOH HOH . H 6 HOH D 39 339 94 HOH HOH . H 6 HOH D 40 340 131 HOH HOH . H 6 HOH D 41 341 25 HOH HOH . H 6 HOH D 42 342 83 HOH HOH . H 6 HOH D 43 343 24 HOH HOH . H 6 HOH D 44 344 15 HOH HOH . H 6 HOH D 45 345 234 HOH HOH . H 6 HOH D 46 346 121 HOH HOH . H 6 HOH D 47 347 102 HOH HOH . H 6 HOH D 48 348 180 HOH HOH . H 6 HOH D 49 349 112 HOH HOH . H 6 HOH D 50 350 200 HOH HOH . H 6 HOH D 51 351 98 HOH HOH . I 6 HOH E 1 301 59 HOH HOH . I 6 HOH E 2 302 193 HOH HOH . I 6 HOH E 3 303 78 HOH HOH . I 6 HOH E 4 304 72 HOH HOH . I 6 HOH E 5 305 215 HOH HOH . I 6 HOH E 6 306 93 HOH HOH . I 6 HOH E 7 307 216 HOH HOH . I 6 HOH E 8 308 64 HOH HOH . I 6 HOH E 9 309 61 HOH HOH . I 6 HOH E 10 310 74 HOH HOH . I 6 HOH E 11 311 101 HOH HOH . I 6 HOH E 12 312 53 HOH HOH . I 6 HOH E 13 313 165 HOH HOH . I 6 HOH E 14 314 21 HOH HOH . I 6 HOH E 15 315 201 HOH HOH . I 6 HOH E 16 316 76 HOH HOH . I 6 HOH E 17 317 88 HOH HOH . I 6 HOH E 18 318 241 HOH HOH . I 6 HOH E 19 319 75 HOH HOH . I 6 HOH E 20 320 198 HOH HOH . I 6 HOH E 21 321 188 HOH HOH . I 6 HOH E 22 322 209 HOH HOH . I 6 HOH E 23 323 191 HOH HOH . I 6 HOH E 24 324 192 HOH HOH . I 6 HOH E 25 325 34 HOH HOH . I 6 HOH E 26 326 195 HOH HOH . I 6 HOH E 27 327 230 HOH HOH . I 6 HOH E 28 328 43 HOH HOH . I 6 HOH E 29 329 235 HOH HOH . I 6 HOH E 30 330 77 HOH HOH . I 6 HOH E 31 331 232 HOH HOH . I 6 HOH E 32 332 233 HOH HOH . I 6 HOH E 33 333 208 HOH HOH . I 6 HOH E 34 334 51 HOH HOH . I 6 HOH E 35 335 150 HOH HOH . I 6 HOH E 36 336 214 HOH HOH . I 6 HOH E 37 337 89 HOH HOH . I 6 HOH E 38 338 68 HOH HOH . I 6 HOH E 39 339 42 HOH HOH . I 6 HOH E 40 340 211 HOH HOH . I 6 HOH E 41 341 240 HOH HOH . I 6 HOH E 42 342 28 HOH HOH . I 6 HOH E 43 343 202 HOH HOH . I 6 HOH E 44 344 27 HOH HOH . I 6 HOH E 45 345 55 HOH HOH . I 6 HOH E 46 346 26 HOH HOH . I 6 HOH E 47 347 168 HOH HOH . I 6 HOH E 48 348 71 HOH HOH . I 6 HOH E 49 349 152 HOH HOH . I 6 HOH E 50 350 33 HOH HOH . I 6 HOH E 51 351 2 HOH HOH . I 6 HOH E 52 352 146 HOH HOH . I 6 HOH E 53 353 181 HOH HOH . I 6 HOH E 54 354 60 HOH HOH . I 6 HOH E 55 355 145 HOH HOH . I 6 HOH E 56 356 65 HOH HOH . I 6 HOH E 57 357 204 HOH HOH . I 6 HOH E 58 358 167 HOH HOH . I 6 HOH E 59 359 45 HOH HOH . I 6 HOH E 60 360 111 HOH HOH . I 6 HOH E 61 361 143 HOH HOH . I 6 HOH E 62 362 70 HOH HOH . I 6 HOH E 63 363 82 HOH HOH . I 6 HOH E 64 364 226 HOH HOH . I 6 HOH E 65 365 120 HOH HOH . I 6 HOH E 66 366 66 HOH HOH . I 6 HOH E 67 367 125 HOH HOH . I 6 HOH E 68 368 85 HOH HOH . I 6 HOH E 69 369 52 HOH HOH . I 6 HOH E 70 370 140 HOH HOH . I 6 HOH E 71 371 81 HOH HOH . I 6 HOH E 72 372 114 HOH HOH . I 6 HOH E 73 373 144 HOH HOH . I 6 HOH E 74 374 142 HOH HOH . I 6 HOH E 75 375 113 HOH HOH . I 6 HOH E 76 376 104 HOH HOH . I 6 HOH E 77 377 19 HOH HOH . I 6 HOH E 78 378 179 HOH HOH . I 6 HOH E 79 379 242 HOH HOH . I 6 HOH E 80 380 190 HOH HOH . I 6 HOH E 81 381 116 HOH HOH . I 6 HOH E 82 382 110 HOH HOH . I 6 HOH E 83 383 84 HOH HOH . I 6 HOH E 84 384 12 HOH HOH . I 6 HOH E 85 385 189 HOH HOH . I 6 HOH E 86 386 115 HOH HOH . I 6 HOH E 87 387 203 HOH HOH . I 6 HOH E 88 388 225 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C9 JSO . . . E 5 6.769 10.194 -10.042 1 40.26 ? C9 JSO 301 A 1 HETATM 2 C C6 JSO . . . E 5 7.514 10.496 -8.778 1 43.94 ? C6 JSO 301 A 1 HETATM 3 N N5 JSO . . . E 5 7.805 11.764 -8.57 1 45.4 ? N5 JSO 301 A 1 HETATM 4 C C4A JSO . . . E 5 8.479 12.069 -7.425 1 48.81 ? C4A JSO 301 A 1 HETATM 5 C C4 JSO . . . E 5 8.848 13.446 -7.124 1 49.65 ? C4 JSO 301 A 1 HETATM 6 O O4 JSO . . . E 5 8.583 14.397 -7.849 1 50.67 ? O4 JSO 301 A 1 HETATM 7 N N3 JSO . . . E 5 9.525 13.659 -5.95 1 51.03 ? N3 JSO 301 A 1 HETATM 8 C C2 JSO . . . E 5 9.841 12.636 -5.088 1 49.69 ? C2 JSO 301 A 1 HETATM 9 N N2 JSO . . . E 5 10.509 12.943 -3.968 1 51.41 ? N2 JSO 301 A 1 HETATM 10 N N1 JSO . . . E 5 9.516 11.381 -5.341 1 47.66 ? N1 JSO 301 A 1 HETATM 11 C C8A JSO . . . E 5 8.836 11.07 -6.492 1 46.99 ? C8A JSO 301 A 1 HETATM 12 N N8 JSO . . . E 5 8.529 9.763 -6.703 1 46.36 ? N8 JSO 301 A 1 HETATM 13 C C7 JSO . . . E 5 7.886 9.479 -7.814 1 48.85 ? C7 JSO 301 A 1 # _model_server_stats.io_time_ms 42 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 13 #