data_7ZT8 # _model_server_result.job_id v_09sfWt5HpRTgvXadO-kw _model_server_result.datetime_utc '2024-11-07 06:29:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zt8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":302}' # _entry.id 7ZT8 # _exptl.entry_id 7ZT8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZT8 _cell.length_a 69.6 _cell.length_b 113.13 _cell.length_c 143.76 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZT8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 6 _struct_asym.id F _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.984 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? disulf ? disulf4 C SG CYS 24 D CYS 22 1_555 C SG CYS 90 D CYS 88 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.032 ? disulf ? disulf5 C SG CYS 24 D CYS 22 1_555 C SG CYS 90 D CYS 88 1_555 ? ? ? ? B ? ? ? ? ? ? ? 2.067 ? disulf ? disulf6 C SG CYS 134 D CYS 132 1_555 C SG CYS 184 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? disulf ? disulf7 C SG CYS 159 D CYS 157 1_555 D SG CYS 169 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? disulf ? disulf8 D SG CYS 23 E CYS 23 1_555 D SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.978 ? disulf ? disulf9 D SG CYS 143 E CYS 143 1_555 D SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.968 ? covale ? covale1 A NZ LYS 44 A LYS 43 1_555 E C01 OVV . A OVV 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.266 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 7ZT8 _atom_sites.fract_transf_matrix[1][1] 0.014368 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008839 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006956 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 OVV A 1 301 301 OVV OVV . F 6 EDO A 1 302 3 EDO EDO . G 7 MPO D 1 301 201 MPO MPO . H 8 HOH A 1 401 53 HOH HOH . H 8 HOH A 2 402 130 HOH HOH . H 8 HOH A 3 403 90 HOH HOH . H 8 HOH A 4 404 83 HOH HOH . H 8 HOH A 5 405 14 HOH HOH . H 8 HOH A 6 406 58 HOH HOH . H 8 HOH A 7 407 4 HOH HOH . H 8 HOH A 8 408 138 HOH HOH . H 8 HOH A 9 409 48 HOH HOH . H 8 HOH A 10 410 51 HOH HOH . H 8 HOH A 11 411 20 HOH HOH . H 8 HOH A 12 412 78 HOH HOH . H 8 HOH A 13 413 52 HOH HOH . H 8 HOH A 14 414 139 HOH HOH . H 8 HOH A 15 415 97 HOH HOH . H 8 HOH A 16 416 49 HOH HOH . H 8 HOH A 17 417 84 HOH HOH . H 8 HOH A 18 418 62 HOH HOH . H 8 HOH A 19 419 2 HOH HOH . H 8 HOH A 20 420 10 HOH HOH . H 8 HOH A 21 421 113 HOH HOH . H 8 HOH A 22 422 85 HOH HOH . H 8 HOH A 23 423 112 HOH HOH . H 8 HOH A 24 424 25 HOH HOH . H 8 HOH A 25 425 150 HOH HOH . H 8 HOH A 26 426 63 HOH HOH . H 8 HOH A 27 427 148 HOH HOH . H 8 HOH A 28 428 110 HOH HOH . H 8 HOH A 29 429 86 HOH HOH . H 8 HOH A 30 430 119 HOH HOH . H 8 HOH A 31 431 140 HOH HOH . H 8 HOH A 32 432 15 HOH HOH . H 8 HOH A 33 433 76 HOH HOH . H 8 HOH A 34 434 50 HOH HOH . H 8 HOH A 35 435 19 HOH HOH . H 8 HOH A 36 436 5 HOH HOH . H 8 HOH A 37 437 82 HOH HOH . H 8 HOH A 38 438 3 HOH HOH . H 8 HOH A 39 439 81 HOH HOH . H 8 HOH A 40 440 149 HOH HOH . H 8 HOH A 41 441 24 HOH HOH . H 8 HOH A 42 442 108 HOH HOH . H 8 HOH A 43 443 117 HOH HOH . H 8 HOH A 44 444 60 HOH HOH . H 8 HOH A 45 445 98 HOH HOH . H 8 HOH A 46 446 47 HOH HOH . H 8 HOH A 47 447 118 HOH HOH . H 8 HOH A 48 448 64 HOH HOH . H 8 HOH A 49 449 124 HOH HOH . H 8 HOH A 50 450 21 HOH HOH . H 8 HOH A 51 451 125 HOH HOH . H 8 HOH A 52 452 114 HOH HOH . H 8 HOH A 53 453 26 HOH HOH . I 8 HOH B 1 101 80 HOH HOH . I 8 HOH B 2 102 17 HOH HOH . I 8 HOH B 3 103 16 HOH HOH . I 8 HOH B 4 104 92 HOH HOH . I 8 HOH B 5 105 79 HOH HOH . I 8 HOH B 6 106 127 HOH HOH . I 8 HOH B 7 107 67 HOH HOH . I 8 HOH B 8 108 46 HOH HOH . I 8 HOH B 9 109 95 HOH HOH . I 8 HOH B 10 110 129 HOH HOH . I 8 HOH B 11 111 18 HOH HOH . I 8 HOH B 12 112 128 HOH HOH . J 8 HOH D 1 401 59 HOH HOH . J 8 HOH D 2 402 131 HOH HOH . J 8 HOH D 3 403 135 HOH HOH . J 8 HOH D 4 404 61 HOH HOH . J 8 HOH D 5 405 8 HOH HOH . J 8 HOH D 6 406 134 HOH HOH . J 8 HOH D 7 407 88 HOH HOH . J 8 HOH D 8 408 75 HOH HOH . J 8 HOH D 9 409 12 HOH HOH . J 8 HOH D 10 410 29 HOH HOH . J 8 HOH D 11 411 54 HOH HOH . J 8 HOH D 12 412 23 HOH HOH . J 8 HOH D 13 413 136 HOH HOH . J 8 HOH D 14 414 7 HOH HOH . J 8 HOH D 15 415 27 HOH HOH . J 8 HOH D 16 416 87 HOH HOH . J 8 HOH D 17 417 133 HOH HOH . J 8 HOH D 18 418 152 HOH HOH . J 8 HOH D 19 419 57 HOH HOH . J 8 HOH D 20 420 70 HOH HOH . J 8 HOH D 21 421 9 HOH HOH . J 8 HOH D 22 422 151 HOH HOH . J 8 HOH D 23 423 122 HOH HOH . J 8 HOH D 24 424 13 HOH HOH . J 8 HOH D 25 425 91 HOH HOH . J 8 HOH D 26 426 123 HOH HOH . J 8 HOH D 27 427 77 HOH HOH . J 8 HOH D 28 428 103 HOH HOH . J 8 HOH D 29 429 11 HOH HOH . J 8 HOH D 30 430 22 HOH HOH . J 8 HOH D 31 431 28 HOH HOH . J 8 HOH D 32 432 153 HOH HOH . J 8 HOH D 33 433 94 HOH HOH . J 8 HOH D 34 434 99 HOH HOH . K 8 HOH E 1 301 147 HOH HOH . K 8 HOH E 2 302 116 HOH HOH . K 8 HOH E 3 303 68 HOH HOH . K 8 HOH E 4 304 145 HOH HOH . K 8 HOH E 5 305 71 HOH HOH . K 8 HOH E 6 306 102 HOH HOH . K 8 HOH E 7 307 89 HOH HOH . K 8 HOH E 8 308 141 HOH HOH . K 8 HOH E 9 309 143 HOH HOH . K 8 HOH E 10 310 65 HOH HOH . K 8 HOH E 11 311 101 HOH HOH . K 8 HOH E 12 312 30 HOH HOH . K 8 HOH E 13 313 104 HOH HOH . K 8 HOH E 14 314 72 HOH HOH . K 8 HOH E 15 315 105 HOH HOH . K 8 HOH E 16 316 142 HOH HOH . K 8 HOH E 17 317 96 HOH HOH . K 8 HOH E 18 318 42 HOH HOH . K 8 HOH E 19 319 146 HOH HOH . K 8 HOH E 20 320 55 HOH HOH . K 8 HOH E 21 321 33 HOH HOH . K 8 HOH E 22 322 132 HOH HOH . K 8 HOH E 23 323 6 HOH HOH . K 8 HOH E 24 324 41 HOH HOH . K 8 HOH E 25 325 40 HOH HOH . K 8 HOH E 26 326 109 HOH HOH . K 8 HOH E 27 327 36 HOH HOH . K 8 HOH E 28 328 38 HOH HOH . K 8 HOH E 29 329 144 HOH HOH . K 8 HOH E 30 330 35 HOH HOH . K 8 HOH E 31 331 31 HOH HOH . K 8 HOH E 32 332 106 HOH HOH . K 8 HOH E 33 333 32 HOH HOH . K 8 HOH E 34 334 73 HOH HOH . K 8 HOH E 35 335 39 HOH HOH . K 8 HOH E 36 336 100 HOH HOH . K 8 HOH E 37 337 107 HOH HOH . K 8 HOH E 38 338 69 HOH HOH . K 8 HOH E 39 339 120 HOH HOH . K 8 HOH E 40 340 93 HOH HOH . K 8 HOH E 41 341 121 HOH HOH . K 8 HOH E 42 342 154 HOH HOH . K 8 HOH E 43 343 115 HOH HOH . K 8 HOH E 44 344 44 HOH HOH . K 8 HOH E 45 345 56 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . F 6 -6.006 -13.781 23.28 1 65.21 ? C1 EDO 302 A 1 HETATM 2 O O1 EDO . . . F 6 -4.811 -13.312 22.654 1 52.63 ? O1 EDO 302 A 1 HETATM 3 C C2 EDO . . . F 6 -6.687 -14.908 22.573 1 68.54 ? C2 EDO 302 A 1 HETATM 4 O O2 EDO . . . F 6 -6.125 -16.193 22.813 1 59.34 ? O2 EDO 302 A 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 6 _model_server_stats.element_count 4 #