data_7ZT9 # _model_server_result.job_id 2tbSM-mu0yOA4eRki2IK0w _model_server_result.datetime_utc '2024-11-07 06:31:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zt9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":306}' # _entry.id 7ZT9 # _exptl.entry_id 7ZT9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZT9 _cell.length_a 88.54 _cell.length_b 96.24 _cell.length_c 117.25 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZT9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 F N N ? 6 G N N ? 6 H N N ? 6 I N N ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 99 A CYS 98 1_555 A SG CYS 162 A CYS 161 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.082 ? disulf ? disulf2 A SG CYS 201 A CYS 200 1_555 A SG CYS 257 A CYS 256 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.986 ? disulf ? disulf3 B SG CYS 26 B CYS 25 1_555 B SG CYS 81 B CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.013 ? disulf ? disulf4 C SG CYS 24 D CYS 22 1_555 C SG CYS 90 D CYS 88 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.998 ? disulf ? disulf5 C SG CYS 134 D CYS 132 1_555 C SG CYS 184 D CYS 182 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf6 C SG CYS 159 D CYS 157 1_555 D SG CYS 169 E CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? disulf ? disulf7 D SG CYS 23 E CYS 23 1_555 D SG CYS 91 E CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.935 ? disulf ? disulf8 D SG CYS 143 E CYS 143 1_555 D SG CYS 208 E CYS 208 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.993 ? covale ? covale1 A NZ LYS 44 A LYS 43 1_555 E C8 4MA . A 4MA 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.26 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 101 n n C1 C2 EDO sing 102 n n C1 H11 EDO sing 103 n n C1 H12 EDO sing 104 n n O1 HO1 EDO sing 105 n n C2 O2 EDO sing 106 n n C2 H21 EDO sing 107 n n C2 H22 EDO sing 108 n n O2 HO2 EDO sing 109 n n # _atom_sites.entry_id 7ZT9 _atom_sites.fract_transf_matrix[1][1] 0.011294 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010391 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008529 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 5 4MA A 1 301 301 4MA 4MA . F 6 EDO A 1 302 2 EDO EDO . G 6 EDO A 1 303 11 EDO EDO . H 6 EDO A 1 304 13 EDO EDO . I 6 EDO A 1 305 15 EDO EDO . J 6 EDO A 1 306 16 EDO EDO . K 6 EDO E 1 301 7 EDO EDO . L 7 HOH A 1 401 4 HOH HOH . L 7 HOH A 2 402 36 HOH HOH . L 7 HOH A 3 403 28 HOH HOH . L 7 HOH A 4 404 37 HOH HOH . L 7 HOH A 5 405 123 HOH HOH . L 7 HOH A 6 406 31 HOH HOH . L 7 HOH A 7 407 65 HOH HOH . L 7 HOH A 8 408 6 HOH HOH . L 7 HOH A 9 409 81 HOH HOH . L 7 HOH A 10 410 45 HOH HOH . L 7 HOH A 11 411 30 HOH HOH . L 7 HOH A 12 412 34 HOH HOH . L 7 HOH A 13 413 147 HOH HOH . L 7 HOH A 14 414 72 HOH HOH . L 7 HOH A 15 415 35 HOH HOH . L 7 HOH A 16 416 132 HOH HOH . L 7 HOH A 17 417 1 HOH HOH . L 7 HOH A 18 418 64 HOH HOH . L 7 HOH A 19 419 63 HOH HOH . L 7 HOH A 20 420 131 HOH HOH . L 7 HOH A 21 421 39 HOH HOH . L 7 HOH A 22 422 58 HOH HOH . L 7 HOH A 23 423 124 HOH HOH . L 7 HOH A 24 424 62 HOH HOH . L 7 HOH A 25 425 133 HOH HOH . L 7 HOH A 26 426 29 HOH HOH . L 7 HOH A 27 427 135 HOH HOH . L 7 HOH A 28 428 33 HOH HOH . L 7 HOH A 29 429 38 HOH HOH . L 7 HOH A 30 430 60 HOH HOH . L 7 HOH A 31 431 149 HOH HOH . L 7 HOH A 32 432 130 HOH HOH . L 7 HOH A 33 433 142 HOH HOH . L 7 HOH A 34 434 126 HOH HOH . L 7 HOH A 35 435 129 HOH HOH . L 7 HOH A 36 436 150 HOH HOH . M 7 HOH B 1 101 73 HOH HOH . M 7 HOH B 2 102 134 HOH HOH . M 7 HOH B 3 103 41 HOH HOH . M 7 HOH B 4 104 42 HOH HOH . M 7 HOH B 5 105 32 HOH HOH . M 7 HOH B 6 106 61 HOH HOH . M 7 HOH B 7 107 40 HOH HOH . M 7 HOH B 8 108 43 HOH HOH . M 7 HOH B 9 109 140 HOH HOH . M 7 HOH B 10 110 44 HOH HOH . M 7 HOH B 11 111 59 HOH HOH . M 7 HOH B 12 112 54 HOH HOH . N 7 HOH D 1 301 146 HOH HOH . N 7 HOH D 2 302 75 HOH HOH . N 7 HOH D 3 303 145 HOH HOH . N 7 HOH D 4 304 3 HOH HOH . N 7 HOH D 5 305 55 HOH HOH . N 7 HOH D 6 306 22 HOH HOH . N 7 HOH D 7 307 84 HOH HOH . N 7 HOH D 8 308 68 HOH HOH . N 7 HOH D 9 309 79 HOH HOH . N 7 HOH D 10 310 26 HOH HOH . N 7 HOH D 11 311 71 HOH HOH . N 7 HOH D 12 312 23 HOH HOH . N 7 HOH D 13 313 57 HOH HOH . N 7 HOH D 14 314 5 HOH HOH . N 7 HOH D 15 315 66 HOH HOH . N 7 HOH D 16 316 97 HOH HOH . N 7 HOH D 17 317 106 HOH HOH . N 7 HOH D 18 318 70 HOH HOH . N 7 HOH D 19 319 67 HOH HOH . N 7 HOH D 20 320 24 HOH HOH . N 7 HOH D 21 321 144 HOH HOH . N 7 HOH D 22 322 125 HOH HOH . N 7 HOH D 23 323 83 HOH HOH . N 7 HOH D 24 324 76 HOH HOH . N 7 HOH D 25 325 114 HOH HOH . N 7 HOH D 26 326 46 HOH HOH . N 7 HOH D 27 327 77 HOH HOH . N 7 HOH D 28 328 151 HOH HOH . N 7 HOH D 29 329 69 HOH HOH . N 7 HOH D 30 330 80 HOH HOH . N 7 HOH D 31 331 25 HOH HOH . N 7 HOH D 32 332 78 HOH HOH . N 7 HOH D 33 333 122 HOH HOH . N 7 HOH D 34 334 128 HOH HOH . N 7 HOH D 35 335 82 HOH HOH . N 7 HOH D 36 336 85 HOH HOH . N 7 HOH D 37 337 19 HOH HOH . N 7 HOH D 38 338 89 HOH HOH . N 7 HOH D 39 339 127 HOH HOH . N 7 HOH D 40 340 20 HOH HOH . N 7 HOH D 41 341 155 HOH HOH . N 7 HOH D 42 342 56 HOH HOH . N 7 HOH D 43 343 154 HOH HOH . N 7 HOH D 44 344 21 HOH HOH . N 7 HOH D 45 345 115 HOH HOH . N 7 HOH D 46 346 120 HOH HOH . O 7 HOH E 1 401 50 HOH HOH . O 7 HOH E 2 402 137 HOH HOH . O 7 HOH E 3 403 13 HOH HOH . O 7 HOH E 4 404 49 HOH HOH . O 7 HOH E 5 405 53 HOH HOH . O 7 HOH E 6 406 138 HOH HOH . O 7 HOH E 7 407 141 HOH HOH . O 7 HOH E 8 408 15 HOH HOH . O 7 HOH E 9 409 94 HOH HOH . O 7 HOH E 10 410 52 HOH HOH . O 7 HOH E 11 411 98 HOH HOH . O 7 HOH E 12 412 105 HOH HOH . O 7 HOH E 13 413 2 HOH HOH . O 7 HOH E 14 414 108 HOH HOH . O 7 HOH E 15 415 12 HOH HOH . O 7 HOH E 16 416 7 HOH HOH . O 7 HOH E 17 417 109 HOH HOH . O 7 HOH E 18 418 17 HOH HOH . O 7 HOH E 19 419 101 HOH HOH . O 7 HOH E 20 420 118 HOH HOH . O 7 HOH E 21 421 10 HOH HOH . O 7 HOH E 22 422 104 HOH HOH . O 7 HOH E 23 423 92 HOH HOH . O 7 HOH E 24 424 102 HOH HOH . O 7 HOH E 25 425 110 HOH HOH . O 7 HOH E 26 426 48 HOH HOH . O 7 HOH E 27 427 14 HOH HOH . O 7 HOH E 28 428 117 HOH HOH . O 7 HOH E 29 429 8 HOH HOH . O 7 HOH E 30 430 86 HOH HOH . O 7 HOH E 31 431 143 HOH HOH . O 7 HOH E 32 432 9 HOH HOH . O 7 HOH E 33 433 107 HOH HOH . O 7 HOH E 34 434 51 HOH HOH . O 7 HOH E 35 435 91 HOH HOH . O 7 HOH E 36 436 11 HOH HOH . O 7 HOH E 37 437 96 HOH HOH . O 7 HOH E 38 438 47 HOH HOH . O 7 HOH E 39 439 27 HOH HOH . O 7 HOH E 40 440 87 HOH HOH . O 7 HOH E 41 441 93 HOH HOH . O 7 HOH E 42 442 74 HOH HOH . O 7 HOH E 43 443 119 HOH HOH . O 7 HOH E 44 444 90 HOH HOH . O 7 HOH E 45 445 95 HOH HOH . O 7 HOH E 46 446 100 HOH HOH . O 7 HOH E 47 447 16 HOH HOH . O 7 HOH E 48 448 152 HOH HOH . O 7 HOH E 49 449 148 HOH HOH . O 7 HOH E 50 450 113 HOH HOH . O 7 HOH E 51 451 99 HOH HOH . O 7 HOH E 52 452 112 HOH HOH . O 7 HOH E 53 453 116 HOH HOH . O 7 HOH E 54 454 18 HOH HOH . O 7 HOH E 55 455 139 HOH HOH . O 7 HOH E 56 456 88 HOH HOH . O 7 HOH E 57 457 103 HOH HOH . O 7 HOH E 58 458 136 HOH HOH . O 7 HOH E 59 459 156 HOH HOH . O 7 HOH E 60 460 111 HOH HOH . O 7 HOH E 61 461 153 HOH HOH . O 7 HOH E 62 462 121 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . J 6 -25.905 23.648 -49.416 1 77.21 ? C1 EDO 306 A 1 HETATM 2 O O1 EDO . . . J 6 -25.244 22.797 -50.33 1 75.53 ? O1 EDO 306 A 1 HETATM 3 C C2 EDO . . . J 6 -27.329 23.832 -49.764 1 84.42 ? C2 EDO 306 A 1 HETATM 4 O O2 EDO . . . J 6 -28.085 22.661 -49.566 1 76.71 ? O2 EDO 306 A 1 # _model_server_stats.io_time_ms 23 _model_server_stats.parse_time_ms 36 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 304 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #