data_7ZTL # _model_server_result.job_id 9mD3-NnUl1gbykdDFqWojg _model_server_result.datetime_utc '2024-10-10 07:28:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7ztl # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":507}' # _entry.id 7ZTL # _exptl.entry_id 7ZTL _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZTL _cell.length_a 86.614 _cell.length_b 86.614 _cell.length_c 91.789 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZTL _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall 'P 32 2"' _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 F N N ? 5 G N N ? 5 I N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C THR 193 A THR 287 1_555 A N TPO 194 A TPO 288 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.333 ? covale ? covale2 A C TPO 194 A TPO 288 1_555 A N LEU 195 A LEU 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.336 ? covale ? covale3 A SG CYS 245 A CYS 339 1_555 K C5 JWG . B JWG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.813 ? covale ? covale4 B NZ LYS 58 B LYS 85 1_555 K C1 JWG . B JWG 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.324 ? metalc ? metalc1 A OD1 ASN 167 A ASN 261 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.132 ? metalc ? metalc2 A OD1 ASP 180 A ASP 274 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.118 ? metalc ? metalc3 A OD2 ASP 180 A ASP 274 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.549 ? metalc ? metalc4 A OD2 ASP 180 A ASP 274 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc5 C O1B ADP . A ADP 501 1_555 D MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? metalc ? metalc6 C O3B ADP . A ADP 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc7 C O2A ADP . A ADP 501 1_555 E MG MG . A MG 503 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc8 D MG MG . A MG 502 1_555 H O4 BCN . A BCN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.153 ? metalc ? metalc9 D MG MG . A MG 502 1_555 H O6 BCN . A BCN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.146 ? metalc ? metalc10 D MG MG . A MG 502 1_555 H O21 BCN . A BCN 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.148 ? metalc ? metalc11 E MG MG . A MG 503 1_555 L O HOH . A HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.142 ? metalc ? metalc12 E MG MG . A MG 503 1_555 L O HOH . A HOH 680 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.105 ? metalc ? metalc13 J NA NA . A NA 508 1_555 L O HOH . A HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc14 J NA NA . A NA 508 1_555 L O HOH . A HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc15 J NA NA . A NA 508 1_555 L O HOH . A HOH 702 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.258 ? metalc ? metalc16 J NA NA . A NA 508 1_555 L O HOH . A HOH 779 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.189 ? metalc ? metalc17 J NA NA . A NA 508 1_555 L O HOH . A HOH 785 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc18 J NA NA . A NA 508 1_555 L O HOH . A HOH 786 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.247 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 196 n n C1 C2 GOL sing 197 n n C1 H11 GOL sing 198 n n C1 H12 GOL sing 199 n n O1 HO1 GOL sing 200 n n C2 O2 GOL sing 201 n n C2 C3 GOL sing 202 n n C2 H2 GOL sing 203 n n O2 HO2 GOL sing 204 n n C3 O3 GOL sing 205 n n C3 H31 GOL sing 206 n n C3 H32 GOL sing 207 n n O3 HO3 GOL sing 208 n n # _atom_sites.entry_id 7ZTL _atom_sites.fract_transf_matrix[1][1] 0.011545 _atom_sites.fract_transf_matrix[1][2] 0.006666 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013332 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ADP A 1 501 390 ADP ADP . D 4 MG A 1 502 391 MG MG . E 4 MG A 1 503 392 MG MG . F 5 GOL A 1 504 394 GOL GOL . G 5 GOL A 1 505 396 GOL GOL . H 6 BCN A 1 506 397 BCN BCN . I 5 GOL A 1 507 398 GOL GOL . J 7 NA A 1 508 1 NA NA . K 8 JWG B 1 101 90 JWG KXC . L 9 HOH A 1 601 217 HOH HOH . L 9 HOH A 2 602 88 HOH HOH . L 9 HOH A 3 603 112 HOH HOH . L 9 HOH A 4 604 103 HOH HOH . L 9 HOH A 5 605 171 HOH HOH . L 9 HOH A 6 606 97 HOH HOH . L 9 HOH A 7 607 181 HOH HOH . L 9 HOH A 8 608 23 HOH HOH . L 9 HOH A 9 609 184 HOH HOH . L 9 HOH A 10 610 69 HOH HOH . L 9 HOH A 11 611 156 HOH HOH . L 9 HOH A 12 612 59 HOH HOH . L 9 HOH A 13 613 214 HOH HOH . L 9 HOH A 14 614 4 HOH HOH . L 9 HOH A 15 615 87 HOH HOH . L 9 HOH A 16 616 92 HOH HOH . L 9 HOH A 17 617 145 HOH HOH . L 9 HOH A 18 618 235 HOH HOH . L 9 HOH A 19 619 10 HOH HOH . L 9 HOH A 20 620 105 HOH HOH . L 9 HOH A 21 621 84 HOH HOH . L 9 HOH A 22 622 182 HOH HOH . L 9 HOH A 23 623 237 HOH HOH . L 9 HOH A 24 624 164 HOH HOH . L 9 HOH A 25 625 54 HOH HOH . L 9 HOH A 26 626 7 HOH HOH . L 9 HOH A 27 627 17 HOH HOH . L 9 HOH A 28 628 189 HOH HOH . L 9 HOH A 29 629 80 HOH HOH . L 9 HOH A 30 630 58 HOH HOH . L 9 HOH A 31 631 26 HOH HOH . L 9 HOH A 32 632 45 HOH HOH . L 9 HOH A 33 633 5 HOH HOH . L 9 HOH A 34 634 19 HOH HOH . L 9 HOH A 35 635 31 HOH HOH . L 9 HOH A 36 636 221 HOH HOH . L 9 HOH A 37 637 109 HOH HOH . L 9 HOH A 38 638 100 HOH HOH . L 9 HOH A 39 639 39 HOH HOH . L 9 HOH A 40 640 27 HOH HOH . L 9 HOH A 41 641 52 HOH HOH . L 9 HOH A 42 642 25 HOH HOH . L 9 HOH A 43 643 29 HOH HOH . L 9 HOH A 44 644 41 HOH HOH . L 9 HOH A 45 645 73 HOH HOH . L 9 HOH A 46 646 18 HOH HOH . L 9 HOH A 47 647 125 HOH HOH . L 9 HOH A 48 648 2 HOH HOH . L 9 HOH A 49 649 60 HOH HOH . L 9 HOH A 50 650 16 HOH HOH . L 9 HOH A 51 651 57 HOH HOH . L 9 HOH A 52 652 77 HOH HOH . L 9 HOH A 53 653 42 HOH HOH . L 9 HOH A 54 654 8 HOH HOH . L 9 HOH A 55 655 40 HOH HOH . L 9 HOH A 56 656 47 HOH HOH . L 9 HOH A 57 657 34 HOH HOH . L 9 HOH A 58 658 75 HOH HOH . L 9 HOH A 59 659 53 HOH HOH . L 9 HOH A 60 660 11 HOH HOH . L 9 HOH A 61 661 33 HOH HOH . L 9 HOH A 62 662 56 HOH HOH . L 9 HOH A 63 663 243 HOH HOH . L 9 HOH A 64 664 24 HOH HOH . L 9 HOH A 65 665 166 HOH HOH . L 9 HOH A 66 666 114 HOH HOH . L 9 HOH A 67 667 110 HOH HOH . L 9 HOH A 68 668 28 HOH HOH . L 9 HOH A 69 669 67 HOH HOH . L 9 HOH A 70 670 209 HOH HOH . L 9 HOH A 71 671 83 HOH HOH . L 9 HOH A 72 672 192 HOH HOH . L 9 HOH A 73 673 128 HOH HOH . L 9 HOH A 74 674 161 HOH HOH . L 9 HOH A 75 675 120 HOH HOH . L 9 HOH A 76 676 49 HOH HOH . L 9 HOH A 77 677 210 HOH HOH . L 9 HOH A 78 678 22 HOH HOH . L 9 HOH A 79 679 72 HOH HOH . L 9 HOH A 80 680 1 HOH HOH . L 9 HOH A 81 681 62 HOH HOH . L 9 HOH A 82 682 119 HOH HOH . L 9 HOH A 83 683 13 HOH HOH . L 9 HOH A 84 684 106 HOH HOH . L 9 HOH A 85 685 14 HOH HOH . L 9 HOH A 86 686 168 HOH HOH . L 9 HOH A 87 687 222 HOH HOH . L 9 HOH A 88 688 76 HOH HOH . L 9 HOH A 89 689 35 HOH HOH . L 9 HOH A 90 690 21 HOH HOH . L 9 HOH A 91 691 43 HOH HOH . L 9 HOH A 92 692 126 HOH HOH . L 9 HOH A 93 693 108 HOH HOH . L 9 HOH A 94 694 113 HOH HOH . L 9 HOH A 95 695 148 HOH HOH . L 9 HOH A 96 696 46 HOH HOH . L 9 HOH A 97 697 137 HOH HOH . L 9 HOH A 98 698 107 HOH HOH . L 9 HOH A 99 699 12 HOH HOH . L 9 HOH A 100 700 65 HOH HOH . L 9 HOH A 101 701 3 HOH HOH . L 9 HOH A 102 702 236 HOH HOH . L 9 HOH A 103 703 55 HOH HOH . L 9 HOH A 104 704 44 HOH HOH . L 9 HOH A 105 705 71 HOH HOH . L 9 HOH A 106 706 20 HOH HOH . L 9 HOH A 107 707 169 HOH HOH . L 9 HOH A 108 708 99 HOH HOH . L 9 HOH A 109 709 30 HOH HOH . L 9 HOH A 110 710 32 HOH HOH . L 9 HOH A 111 711 244 HOH HOH . L 9 HOH A 112 712 66 HOH HOH . L 9 HOH A 113 713 122 HOH HOH . L 9 HOH A 114 714 74 HOH HOH . L 9 HOH A 115 715 15 HOH HOH . L 9 HOH A 116 716 50 HOH HOH . L 9 HOH A 117 717 38 HOH HOH . L 9 HOH A 118 718 81 HOH HOH . L 9 HOH A 119 719 160 HOH HOH . L 9 HOH A 120 720 63 HOH HOH . L 9 HOH A 121 721 96 HOH HOH . L 9 HOH A 122 722 162 HOH HOH . L 9 HOH A 123 723 51 HOH HOH . L 9 HOH A 124 724 95 HOH HOH . L 9 HOH A 125 725 37 HOH HOH . L 9 HOH A 126 726 82 HOH HOH . L 9 HOH A 127 727 36 HOH HOH . L 9 HOH A 128 728 208 HOH HOH . L 9 HOH A 129 729 94 HOH HOH . L 9 HOH A 130 730 155 HOH HOH . L 9 HOH A 131 731 111 HOH HOH . L 9 HOH A 132 732 157 HOH HOH . L 9 HOH A 133 733 199 HOH HOH . L 9 HOH A 134 734 91 HOH HOH . L 9 HOH A 135 735 6 HOH HOH . L 9 HOH A 136 736 200 HOH HOH . L 9 HOH A 137 737 172 HOH HOH . L 9 HOH A 138 738 9 HOH HOH . L 9 HOH A 139 739 64 HOH HOH . L 9 HOH A 140 740 219 HOH HOH . L 9 HOH A 141 741 173 HOH HOH . L 9 HOH A 142 742 101 HOH HOH . L 9 HOH A 143 743 165 HOH HOH . L 9 HOH A 144 744 79 HOH HOH . L 9 HOH A 145 745 138 HOH HOH . L 9 HOH A 146 746 163 HOH HOH . L 9 HOH A 147 747 194 HOH HOH . L 9 HOH A 148 748 205 HOH HOH . L 9 HOH A 149 749 196 HOH HOH . L 9 HOH A 150 750 141 HOH HOH . L 9 HOH A 151 751 151 HOH HOH . L 9 HOH A 152 752 136 HOH HOH . L 9 HOH A 153 753 129 HOH HOH . L 9 HOH A 154 754 180 HOH HOH . L 9 HOH A 155 755 206 HOH HOH . L 9 HOH A 156 756 152 HOH HOH . L 9 HOH A 157 757 190 HOH HOH . L 9 HOH A 158 758 86 HOH HOH . L 9 HOH A 159 759 142 HOH HOH . L 9 HOH A 160 760 183 HOH HOH . L 9 HOH A 161 761 174 HOH HOH . L 9 HOH A 162 762 115 HOH HOH . L 9 HOH A 163 763 118 HOH HOH . L 9 HOH A 164 764 133 HOH HOH . L 9 HOH A 165 765 195 HOH HOH . L 9 HOH A 166 766 61 HOH HOH . L 9 HOH A 167 767 198 HOH HOH . L 9 HOH A 168 768 70 HOH HOH . L 9 HOH A 169 769 116 HOH HOH . L 9 HOH A 170 770 202 HOH HOH . L 9 HOH A 171 771 228 HOH HOH . L 9 HOH A 172 772 193 HOH HOH . L 9 HOH A 173 773 159 HOH HOH . L 9 HOH A 174 774 147 HOH HOH . L 9 HOH A 175 775 223 HOH HOH . L 9 HOH A 176 776 216 HOH HOH . L 9 HOH A 177 777 85 HOH HOH . L 9 HOH A 178 778 187 HOH HOH . L 9 HOH A 179 779 238 HOH HOH . L 9 HOH A 180 780 117 HOH HOH . L 9 HOH A 181 781 227 HOH HOH . L 9 HOH A 182 782 134 HOH HOH . L 9 HOH A 183 783 78 HOH HOH . L 9 HOH A 184 784 104 HOH HOH . L 9 HOH A 185 785 239 HOH HOH . L 9 HOH A 186 786 240 HOH HOH . L 9 HOH A 187 787 203 HOH HOH . L 9 HOH A 188 788 232 HOH HOH . L 9 HOH A 189 789 201 HOH HOH . L 9 HOH A 190 790 215 HOH HOH . L 9 HOH A 191 791 127 HOH HOH . L 9 HOH A 192 792 123 HOH HOH . L 9 HOH A 193 793 139 HOH HOH . L 9 HOH A 194 794 143 HOH HOH . L 9 HOH A 195 795 121 HOH HOH . L 9 HOH A 196 796 135 HOH HOH . M 9 HOH B 1 201 93 HOH HOH . M 9 HOH B 2 202 207 HOH HOH . M 9 HOH B 3 203 102 HOH HOH . M 9 HOH B 4 204 146 HOH HOH . M 9 HOH B 5 205 90 HOH HOH . M 9 HOH B 6 206 176 HOH HOH . M 9 HOH B 7 207 229 HOH HOH . M 9 HOH B 8 208 230 HOH HOH . M 9 HOH B 9 209 153 HOH HOH . M 9 HOH B 10 210 178 HOH HOH . M 9 HOH B 11 211 234 HOH HOH . M 9 HOH B 12 212 140 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . I 5 -40.215 12.01 -2.035 1 67.11 ? C1 GOL 507 A 1 HETATM 2 O O1 GOL . . . I 5 -39.258 12.77 -1.322 1 71.34 ? O1 GOL 507 A 1 HETATM 3 C C2 GOL . . . I 5 -41.599 12.284 -1.365 1 71.57 ? C2 GOL 507 A 1 HETATM 4 O O2 GOL . . . I 5 -41.552 12.186 0.02 1 75.81 ? O2 GOL 507 A 1 HETATM 5 C C3 GOL . . . I 5 -42.007 13.705 -1.82 1 68.55 ? C3 GOL 507 A 1 HETATM 6 O O3 GOL . . . I 5 -40.82 14.415 -2.049 1 60.69 ? O3 GOL 507 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #