data_7ZUB # _model_server_result.job_id zutlD5nWZ5wrTK5KQAS_KQ _model_server_result.datetime_utc '2024-11-09 02:41:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zub # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1001}' # _entry.id 7ZUB # _exptl.entry_id 7ZUB _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 262.263 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description (3~{Z})-3-(3-oxidanylidene-1~{H}-indol-2-ylidene)-1~{H}-indol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZUB _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZUB _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OD1 ASN 52 A ASN 46 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.238 ? metalc ? metalc2 E O1B ADP . A ADP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.42 ? metalc ? metalc3 E O1A ADP . A ADP 1001 1_555 F MG MG . A MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.905 ? metalc ? metalc4 F MG MG . A MG 1002 1_555 G O4 MOO . A MOO 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? metalc ? metalc5 B OD1 ASN 52 B ASN 46 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc6 H O3B ADP . B ADP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.095 ? metalc ? metalc7 H O2A ADP . B ADP 1001 1_555 I MG MG . B MG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc8 I MG MG . B MG 1002 1_555 J O2 MOO . B MOO 1003 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C16 H10 N2 O2' _chem_comp.formula_weight 262.263 _chem_comp.id JY6 _chem_comp.mon_nstd_flag . _chem_comp.name (3~{Z})-3-(3-oxidanylidene-1~{H}-indol-2-ylidene)-1~{H}-indol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms indirubin # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C12 JY6 doub 215 n y C11 C10 JY6 sing 216 n y C12 C13 JY6 sing 217 n y C10 C9 JY6 doub 218 n y C13 C14 JY6 doub 219 n y C9 C14 JY6 sing 220 n y C9 C8 JY6 sing 221 n n C14 N JY6 sing 222 n n C8 O JY6 doub 223 n n C8 C7 JY6 sing 224 n n N C7 JY6 sing 225 n n C7 C6 JY6 doub 226 z n C6 C4 JY6 sing 227 n n C6 C15 JY6 sing 228 n n C5 C4 JY6 doub 229 n y C5 C JY6 sing 230 n y C4 C3 JY6 sing 231 n y O1 C15 JY6 doub 232 n n C15 N1 JY6 sing 233 n n C C1 JY6 doub 234 n y C3 N1 JY6 sing 235 n n C3 C2 JY6 doub 236 n y C1 C2 JY6 sing 237 n y N1 H9 JY6 sing 238 n n C1 H1 JY6 sing 239 n n C5 H3 JY6 sing 240 n n C2 H2 JY6 sing 241 n n N H8 JY6 sing 242 n n C H JY6 sing 243 n n C10 H4 JY6 sing 244 n n C11 H5 JY6 sing 245 n n C12 H6 JY6 sing 246 n n C13 H7 JY6 sing 247 n n # _atom_sites.entry_id 7ZUB _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 4 ADP A 1 1001 1001 ADP ADP . F 5 MG A 1 1002 1002 MG MG . G 6 MOO A 1 1003 1003 MOO MOO . H 4 ADP B 1 1001 1001 ADP ADP . I 5 MG B 1 1002 1002 MG MG . J 6 MOO B 1 1003 1003 MOO MOO . K 7 JY6 D 1 1001 1001 JY6 XXX . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 JY6 . . . K 7 161.711 164.058 163.062 1 54.37 ? N1 JY6 1001 D 1 HETATM 2 C C7 JY6 . . . K 7 161.011 164.606 159.534 1 58.48 ? C7 JY6 1001 D 1 HETATM 3 C C8 JY6 . . . K 7 160.175 164.206 158.512 1 62.44 ? C8 JY6 1001 D 1 HETATM 4 C C9 JY6 . . . K 7 160.531 164.895 157.313 1 61.12 ? C9 JY6 1001 D 1 HETATM 5 O O1 JY6 . . . K 7 162.76 165.65 161.813 1 64.83 ? O1 JY6 1001 D 1 HETATM 6 C C1 JY6 . . . K 7 159.207 161.323 163.314 1 55.77 ? C1 JY6 1001 D 1 HETATM 7 C C5 JY6 . . . K 7 159.313 162.289 161.107 1 57.89 ? C5 JY6 1001 D 1 HETATM 8 C C6 JY6 . . . K 7 161.083 164.231 160.902 1 57.02 ? C6 JY6 1001 D 1 HETATM 9 C C4 JY6 . . . K 7 160.302 163.172 161.535 1 57.49 ? C4 JY6 1001 D 1 HETATM 10 C C3 JY6 . . . K 7 160.728 163.104 162.874 1 56.78 ? C3 JY6 1001 D 1 HETATM 11 C C2 JY6 . . . K 7 160.189 162.188 163.768 1 56.69 ? C2 JY6 1001 D 1 HETATM 12 N N JY6 . . . K 7 161.881 165.542 159.008 1 60.59 ? N JY6 1001 D 1 HETATM 13 C C JY6 . . . K 7 158.775 161.373 161.997 1 60.18 ? C JY6 1001 D 1 HETATM 14 O O JY6 . . . K 7 159.233 163.383 158.586 1 66.21 ? O JY6 1001 D 1 HETATM 15 C C10 JY6 . . . K 7 160.085 164.905 155.994 1 57.36 ? C10 JY6 1001 D 1 HETATM 16 C C11 JY6 . . . K 7 160.707 165.721 155.062 1 61.83 ? C11 JY6 1001 D 1 HETATM 17 C C12 JY6 . . . K 7 161.77 166.533 155.427 1 61.74 ? C12 JY6 1001 D 1 HETATM 18 C C13 JY6 . . . K 7 162.233 166.547 156.733 1 58.91 ? C13 JY6 1001 D 1 HETATM 19 C C14 JY6 . . . K 7 161.609 165.727 157.663 1 60.61 ? C14 JY6 1001 D 1 HETATM 20 C C15 JY6 . . . K 7 161.919 164.733 161.88 1 58.24 ? C15 JY6 1001 D 1 HETATM 21 H H9 JY6 . . . K 7 162.203 164.23 163.93 1 58.56 ? H9 JY6 1001 D 1 HETATM 22 H H1 JY6 . . . K 7 158.774 160.598 164.001 1 60.09 ? H1 JY6 1001 D 1 HETATM 23 H H3 JY6 . . . K 7 158.934 162.283 160.086 1 60.81 ? H3 JY6 1001 D 1 HETATM 24 H H2 JY6 . . . K 7 160.533 162.152 164.801 1 59.45 ? H2 JY6 1001 D 1 HETATM 25 H H8 JY6 . . . K 7 162.614 166.03 159.513 1 60.11 ? H8 JY6 1001 D 1 HETATM 26 H H JY6 . . . K 7 158.002 160.683 161.66 1 61.83 ? H JY6 1001 D 1 HETATM 27 H H4 JY6 . . . K 7 159.249 164.267 155.711 1 61.12 ? H4 JY6 1001 D 1 HETATM 28 H H5 JY6 . . . K 7 160.353 165.724 154.032 1 62.52 ? H5 JY6 1001 D 1 HETATM 29 H H6 JY6 . . . K 7 162.25 167.168 154.684 1 62.03 ? H6 JY6 1001 D 1 HETATM 30 H H7 JY6 . . . K 7 163.067 167.186 157.021 1 60.24 ? H7 JY6 1001 D 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 30 _model_server_stats.query_time_ms 317 _model_server_stats.encode_time_ms 9 _model_server_stats.element_count 30 #