data_7ZUD # _model_server_result.job_id YygAAiS-Zhp8_X6Wy8EN4g _model_server_result.datetime_utc '2025-07-30 16:29:37' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zud # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":502}' # _entry.id 7ZUD # _exptl.entry_id 7ZUD _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 660.035 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'INOSITOL HEXAKISPHOSPHATE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZUD _cell.length_a 90.741 _cell.length_b 90.741 _cell.length_c 56.588 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZUD _symmetry.cell_setting ? _symmetry.Int_Tables_number 168 _symmetry.space_group_name_Hall 'P 6' _symmetry.space_group_name_H-M 'P 6' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dodecameric _pdbx_struct_assembly.oligomeric_count 12 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_765 -y+2,x-y+1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 136.1115 78.584011 0 3 'crystal symmetry operation' 3_675 -x+y+1,-x+2,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 0 157.168022 0 4 'crystal symmetry operation' 4_775 -x+2,-y+2,z -1 0 0 0 -1 0 0 0 1 90.741 157.168022 0 5 'crystal symmetry operation' 5_565 y,-x+y+1,z 0.5 0.866025 0 -0.866025 0.5 0 0 0 1 -45.3705 78.584011 0 6 'crystal symmetry operation' 6_655 x-y+1,x,z 0.5 -0.866025 0 0.866025 0.5 0 0 0 1 90.741 0 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 198 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 198 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id A _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 218 _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 218 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id A _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.029 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C6 H18 O24 P6' _chem_comp.formula_weight 660.035 _chem_comp.id IHP _chem_comp.mon_nstd_flag . _chem_comp.name 'INOSITOL HEXAKISPHOSPHATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'MYO-INOSITOL HEXAKISPHOSPHATE;INOSITOL 1,2,3,4,5,6-HEXAKISPHOSPHATE' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 IHP sing 152 n n C1 C6 IHP sing 153 n n C1 O11 IHP sing 154 n n C1 H1 IHP sing 155 n n C2 C3 IHP sing 156 n n C2 O12 IHP sing 157 n n C2 H2 IHP sing 158 n n C3 C4 IHP sing 159 n n C3 O13 IHP sing 160 n n C3 H3 IHP sing 161 n n C4 C5 IHP sing 162 n n C4 O14 IHP sing 163 n n C4 H4 IHP sing 164 n n C5 C6 IHP sing 165 n n C5 O15 IHP sing 166 n n C5 H5 IHP sing 167 n n C6 O16 IHP sing 168 n n C6 H6 IHP sing 169 n n O11 P1 IHP sing 170 n n P1 O21 IHP doub 171 n n P1 O31 IHP sing 172 n n P1 O41 IHP sing 173 n n O31 H31 IHP sing 174 n n O41 H41 IHP sing 175 n n O12 P2 IHP sing 176 n n P2 O22 IHP doub 177 n n P2 O32 IHP sing 178 n n P2 O42 IHP sing 179 n n O32 H32 IHP sing 180 n n O42 H42 IHP sing 181 n n O13 P3 IHP sing 182 n n P3 O23 IHP doub 183 n n P3 O33 IHP sing 184 n n P3 O43 IHP sing 185 n n O33 H33 IHP sing 186 n n O43 H43 IHP sing 187 n n O14 P4 IHP sing 188 n n P4 O24 IHP doub 189 n n P4 O34 IHP sing 190 n n P4 O44 IHP sing 191 n n O34 H34 IHP sing 192 n n O44 H44 IHP sing 193 n n O15 P5 IHP sing 194 n n P5 O25 IHP doub 195 n n P5 O35 IHP sing 196 n n P5 O45 IHP sing 197 n n O35 H35 IHP sing 198 n n O45 H45 IHP sing 199 n n O16 P6 IHP sing 200 n n P6 O26 IHP doub 201 n n P6 O36 IHP sing 202 n n P6 O46 IHP sing 203 n n O36 H36 IHP sing 204 n n O46 H46 IHP sing 205 n n # _atom_sites.entry_id 7ZUD _atom_sites.fract_transf_matrix[1][1] 0.01102 _atom_sites.fract_transf_matrix[1][2] 0.006363 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012725 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017672 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 IHP A 1 501 501 IHP IHP . D 3 IHP A 1 502 502 IHP IHP . E 4 HOH A 1 601 9 HOH HOH . E 4 HOH A 2 602 6 HOH HOH . E 4 HOH A 3 603 7 HOH HOH . E 4 HOH A 4 604 4 HOH HOH . E 4 HOH A 5 605 12 HOH HOH . E 4 HOH A 6 606 5 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 IHP . A . D 3 46.62 76.792 6.661 0.08 104.93 ? C1 IHP 502 A 1 HETATM 2 C C1 IHP . B . D 3 46.371 78.918 7.301 0.08 105.08 ? C1 IHP 502 A 1 HETATM 3 C C2 IHP . A . D 3 45.16 76.418 6.345 0.08 104.64 ? C2 IHP 502 A 1 HETATM 4 C C2 IHP . B . D 3 47.53 77.994 6.913 0.08 105.12 ? C2 IHP 502 A 1 HETATM 5 C C3 IHP . A . D 3 43.994 77.413 6.2 0.08 104.42 ? C3 IHP 502 A 1 HETATM 6 C C3 IHP . B . D 3 47.394 76.555 6.395 0.08 105.05 ? C3 IHP 502 A 1 HETATM 7 C C4 IHP . A . D 3 44.425 78.722 5.534 0.08 104.03 ? C4 IHP 502 A 1 HETATM 8 C C4 IHP . B . D 3 46.163 76.36 5.489 0.08 104.5 ? C4 IHP 502 A 1 HETATM 9 C C5 IHP . A . D 3 45.798 79.155 6.046 0.08 104.49 ? C5 IHP 502 A 1 HETATM 10 C C5 IHP . B . D 3 44.989 77.262 5.889 0.08 104.35 ? C5 IHP 502 A 1 HETATM 11 C C6 IHP . A . D 3 47.004 78.192 6.131 0.08 104.7 ? C6 IHP 502 A 1 HETATM 12 C C6 IHP . B . D 3 45.132 78.687 6.429 0.08 104.52 ? C6 IHP 502 A 1 HETATM 13 O O11 IHP . A . D 3 47.375 76.219 7.698 0.08 105.83 ? O11 IHP 502 A 1 HETATM 14 O O11 IHP . B . D 3 46.381 79.946 8.256 0.08 106.4 ? O11 IHP 502 A 1 HETATM 15 P P1 IHP . A . D 3 48.884 75.601 7.426 0.08 105.65 ? P1 IHP 502 A 1 HETATM 16 P P1 IHP . B . D 3 46.599 81.494 7.726 0.08 105.62 ? P1 IHP 502 A 1 HETATM 17 O O21 IHP . A . D 3 49.649 75.631 8.736 0.08 106.25 ? O21 IHP 502 A 1 HETATM 18 O O21 IHP . B . D 3 45.861 82.45 8.631 0.08 106.85 ? O21 IHP 502 A 1 HETATM 19 O O31 IHP . A . D 3 49.61 76.426 6.391 0.08 105.06 ? O31 IHP 502 A 1 HETATM 20 O O31 IHP . B . D 3 46.066 81.628 6.319 0.08 104.77 ? O31 IHP 502 A 1 HETATM 21 O O41 IHP . A . D 3 48.765 74.175 6.943 0.08 103.8 ? O41 IHP 502 A 1 HETATM 22 O O41 IHP . B . D 3 48.071 81.826 7.737 0.08 106.29 ? O41 IHP 502 A 1 HETATM 23 O O12 IHP . A . D 3 44.581 75.468 7.226 0.08 105.24 ? O12 IHP 502 A 1 HETATM 24 O O12 IHP . B . D 3 48.6 77.889 7.836 0.08 106.08 ? O12 IHP 502 A 1 HETATM 25 P P2 IHP . A . D 3 44.858 73.845 7.015 0.08 105.21 ? P2 IHP 502 A 1 HETATM 26 P P2 IHP . B . D 3 50.093 78.366 7.317 0.08 106.2 ? P2 IHP 502 A 1 HETATM 27 O O22 IHP . A . D 3 43.589 73.184 6.532 0.08 103.25 ? O22 IHP 502 A 1 HETATM 28 O O22 IHP . B . D 3 50.883 77.159 6.873 0.08 105.04 ? O22 IHP 502 A 1 HETATM 29 O O32 IHP . A . D 3 45.947 73.648 5.988 0.08 104.87 ? O32 IHP 502 A 1 HETATM 30 O O32 IHP . B . D 3 49.937 79.314 6.152 0.08 104.61 ? O32 IHP 502 A 1 HETATM 31 O O42 IHP . A . D 3 45.28 73.204 8.333 0.08 105.7 ? O42 IHP 502 A 1 HETATM 32 O O42 IHP . B . D 3 50.827 79.063 8.436 0.08 105.13 ? O42 IHP 502 A 1 HETATM 33 O O13 IHP . A . D 3 42.677 76.937 6.145 0.08 104.6 ? O13 IHP 502 A 1 HETATM 34 O O13 IHP . B . D 3 48.529 75.733 6.322 0.08 104.88 ? O13 IHP 502 A 1 HETATM 35 P P3 IHP . A . D 3 41.656 77.345 7.37 0.08 105.57 ? P3 IHP 502 A 1 HETATM 36 P P3 IHP . B . D 3 48.417 74.23 6.981 0.08 104.19 ? P3 IHP 502 A 1 HETATM 37 O O23 IHP . A . D 3 41.993 78.722 7.898 0.08 105.67 ? O23 IHP 502 A 1 HETATM 38 O O23 IHP . B . D 3 47.491 74.29 8.172 0.08 106.39 ? O23 IHP 502 A 1 HETATM 39 O O33 IHP . A . D 3 41.809 76.336 8.477 0.08 106.69 ? O33 IHP 502 A 1 HETATM 40 O O33 IHP . B . D 3 49.781 73.762 7.421 0.08 100.73 ? O33 IHP 502 A 1 HETATM 41 O O43 IHP . A . D 3 40.232 77.331 6.868 0.08 104.15 ? O43 IHP 502 A 1 HETATM 42 O O43 IHP . B . D 3 47.861 73.27 5.956 0.08 102.74 ? O43 IHP 502 A 1 HETATM 43 O O14 IHP . A . D 3 44.208 78.689 4.141 0.08 102.85 ? O14 IHP 502 A 1 HETATM 44 O O14 IHP . B . D 3 46.496 76.271 4.122 0.08 103.11 ? O14 IHP 502 A 1 HETATM 45 P P4 IHP . A . D 3 45.141 79.607 3.134 0.08 101.62 ? P4 IHP 502 A 1 HETATM 46 P P4 IHP . B . D 3 46.153 77.54 3.12 0.08 101.85 ? P4 IHP 502 A 1 HETATM 47 O O24 IHP . A . D 3 46.552 79.07 3.111 0.08 102.01 ? O24 IHP 502 A 1 HETATM 48 O O24 IHP . B . D 3 44.658 77.668 2.944 0.08 101.76 ? O24 IHP 502 A 1 HETATM 49 O O34 IHP . A . D 3 45.149 81.039 3.611 0.08 102.68 ? O34 IHP 502 A 1 HETATM 50 O O34 IHP . B . D 3 46.79 77.3 1.773 0.08 100.6 ? O34 IHP 502 A 1 HETATM 51 O O44 IHP . A . D 3 44.567 79.55 1.738 0.08 100.12 ? O44 IHP 502 A 1 HETATM 52 O O44 IHP . B . D 3 46.702 78.817 3.711 0.08 102.59 ? O44 IHP 502 A 1 HETATM 53 O O15 IHP . A . D 3 46.008 80.552 6.151 0.08 104.56 ? O15 IHP 502 A 1 HETATM 54 O O15 IHP . B . D 3 43.738 76.895 5.356 0.08 104.03 ? O15 IHP 502 A 1 HETATM 55 P P5 IHP . A . D 3 44.829 81.582 6.713 0.08 104.93 ? P5 IHP 502 A 1 HETATM 56 P P5 IHP . B . D 3 43.165 75.371 5.617 0.08 104.92 ? P5 IHP 502 A 1 HETATM 57 O O25 IHP . A . D 3 44.542 81.35 8.184 0.08 105.83 ? O25 IHP 502 A 1 HETATM 58 O O25 IHP . B . D 3 43.939 74.718 6.737 0.08 105.17 ? O25 IHP 502 A 1 HETATM 59 O O35 IHP . A . D 3 43.558 81.402 5.917 0.08 104.6 ? O35 IHP 502 A 1 HETATM 60 O O35 IHP . B . D 3 43.318 74.556 4.355 0.08 102.61 ? O35 IHP 502 A 1 HETATM 61 O O45 IHP . A . D 3 45.311 83.002 6.537 0.08 104.95 ? O45 IHP 502 A 1 HETATM 62 O O45 IHP . B . D 3 41.704 75.438 5.992 0.08 104.92 ? O45 IHP 502 A 1 HETATM 63 O O16 IHP . A . D 3 48.291 78.659 6.498 0.08 105.13 ? O16 IHP 502 A 1 HETATM 64 O O16 IHP . B . D 3 43.977 79.428 6.721 0.08 104.42 ? O16 IHP 502 A 1 HETATM 65 P P6 IHP . A . D 3 48.632 80.244 6.81 0.08 105.35 ? P6 IHP 502 A 1 HETATM 66 P P6 IHP . B . D 3 42.756 78.841 7.665 0.08 105.12 ? P6 IHP 502 A 1 HETATM 67 O O26 IHP . A . D 3 50.106 80.36 7.102 0.08 104.96 ? O26 IHP 502 A 1 HETATM 68 O O26 IHP . B . D 3 41.954 80.048 8.082 0.08 106 ? O26 IHP 502 A 1 HETATM 69 O O36 IHP . A . D 3 47.842 80.724 8.009 0.08 106.03 ? O36 IHP 502 A 1 HETATM 70 O O36 IHP . B . D 3 43.268 78.093 8.901 0.08 108.03 ? O36 IHP 502 A 1 HETATM 71 O O46 IHP . A . D 3 48.311 81.092 5.602 0.08 104.66 ? O46 IHP 502 A 1 HETATM 72 O O46 IHP . B . D 3 41.875 77.928 6.849 0.08 104.96 ? O46 IHP 502 A 1 # _model_server_stats.io_time_ms 16 _model_server_stats.parse_time_ms 14 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 72 #