data_7ZUQ # _model_server_result.job_id f5BekRYbQsYz992Gq0aIcQ _model_server_result.datetime_utc '2025-07-07 17:17:04' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zuq # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":701}' # _entry.id 7ZUQ # _exptl.entry_id 7ZUQ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 297.334 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "5'-DEOXY-5'-METHYLTHIOADENOSINE" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZUQ _cell.length_a 102.862 _cell.length_b 138.228 _cell.length_c 178.365 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZUQ _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.021 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C11 H15 N5 O3 S' _chem_comp.formula_weight 297.334 _chem_comp.id MTA _chem_comp.mon_nstd_flag . _chem_comp.name "5'-DEOXY-5'-METHYLTHIOADENOSINE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CS S5' MTA sing 250 n n CS HCS1 MTA sing 251 n n CS HCS2 MTA sing 252 n n CS HCS3 MTA sing 253 n n S5' C5' MTA sing 254 n n C5' C4' MTA sing 255 n n C5' "H5'1" MTA sing 256 n n C5' "H5'2" MTA sing 257 n n C4' O4' MTA sing 258 n n C4' C3' MTA sing 259 n n C4' H4' MTA sing 260 n n O4' C1' MTA sing 261 n n C2' O2' MTA sing 262 n n C2' C3' MTA sing 263 n n C2' C1' MTA sing 264 n n C2' H2' MTA sing 265 n n O2' HO2' MTA sing 266 n n C3' O3' MTA sing 267 n n C3' H3' MTA sing 268 n n O3' H3T MTA sing 269 n n C1' N9 MTA sing 270 n n C1' H1' MTA sing 271 n n N9 C8 MTA sing 272 n y N9 C4 MTA sing 273 n y C8 N7 MTA doub 274 n y C8 H8 MTA sing 275 n n N7 C5 MTA sing 276 n y C5 C6 MTA sing 277 n y C5 C4 MTA doub 278 n y C6 N6 MTA sing 279 n n C6 N1 MTA doub 280 n y N6 H61 MTA sing 281 n n N6 H62 MTA sing 282 n n N1 C2 MTA sing 283 n y C2 N3 MTA doub 284 n y C2 H2 MTA sing 285 n n N3 C4 MTA sing 286 n y # _atom_sites.entry_id 7ZUQ _atom_sites.fract_transf_matrix[1][1] 0.009722 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007234 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005606 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 701 MTA MTA . D 4 GOL A 1 702 703 GOL GOL . E 5 UNL A 1 703 1001 UNL UNL . F 4 GOL B 1 401 401 GOL GOL . G 6 HOH A 1 801 801 HOH HOH . G 6 HOH A 2 802 806 HOH HOH . G 6 HOH A 3 803 812 HOH HOH . G 6 HOH A 4 804 852 HOH HOH . G 6 HOH A 5 805 831 HOH HOH . G 6 HOH A 6 806 834 HOH HOH . G 6 HOH A 7 807 846 HOH HOH . G 6 HOH A 8 808 830 HOH HOH . G 6 HOH A 9 809 811 HOH HOH . G 6 HOH A 10 810 813 HOH HOH . G 6 HOH A 11 811 827 HOH HOH . G 6 HOH A 12 812 850 HOH HOH . G 6 HOH A 13 813 822 HOH HOH . G 6 HOH A 14 814 849 HOH HOH . G 6 HOH A 15 815 854 HOH HOH . G 6 HOH A 16 816 802 HOH HOH . G 6 HOH A 17 817 845 HOH HOH . G 6 HOH A 18 818 836 HOH HOH . G 6 HOH A 19 819 843 HOH HOH . G 6 HOH A 20 820 838 HOH HOH . G 6 HOH A 21 821 814 HOH HOH . G 6 HOH A 22 822 858 HOH HOH . G 6 HOH A 23 823 868 HOH HOH . G 6 HOH A 24 824 833 HOH HOH . G 6 HOH A 25 825 803 HOH HOH . G 6 HOH A 26 826 832 HOH HOH . G 6 HOH A 27 827 857 HOH HOH . G 6 HOH A 28 828 877 HOH HOH . G 6 HOH A 29 829 820 HOH HOH . G 6 HOH A 30 830 842 HOH HOH . G 6 HOH A 31 831 889 HOH HOH . G 6 HOH A 32 832 847 HOH HOH . G 6 HOH A 33 833 848 HOH HOH . G 6 HOH A 34 834 816 HOH HOH . G 6 HOH A 35 835 885 HOH HOH . G 6 HOH A 36 836 807 HOH HOH . G 6 HOH A 37 837 810 HOH HOH . G 6 HOH A 38 838 873 HOH HOH . G 6 HOH A 39 839 825 HOH HOH . G 6 HOH A 40 840 824 HOH HOH . G 6 HOH A 41 841 804 HOH HOH . G 6 HOH A 42 842 823 HOH HOH . G 6 HOH A 43 843 826 HOH HOH . G 6 HOH A 44 844 507 HOH HOH . G 6 HOH A 45 845 853 HOH HOH . G 6 HOH A 46 846 856 HOH HOH . G 6 HOH A 47 847 519 HOH HOH . G 6 HOH A 48 848 828 HOH HOH . G 6 HOH A 49 849 809 HOH HOH . G 6 HOH A 50 850 876 HOH HOH . G 6 HOH A 51 851 808 HOH HOH . G 6 HOH A 52 852 888 HOH HOH . G 6 HOH A 53 853 865 HOH HOH . G 6 HOH A 54 854 860 HOH HOH . G 6 HOH A 55 855 851 HOH HOH . G 6 HOH A 56 856 805 HOH HOH . G 6 HOH A 57 857 835 HOH HOH . G 6 HOH A 58 858 906 HOH HOH . G 6 HOH A 59 859 883 HOH HOH . G 6 HOH A 60 860 844 HOH HOH . G 6 HOH A 61 861 859 HOH HOH . G 6 HOH A 62 862 829 HOH HOH . G 6 HOH A 63 863 841 HOH HOH . G 6 HOH A 64 864 878 HOH HOH . G 6 HOH A 65 865 867 HOH HOH . G 6 HOH A 66 866 855 HOH HOH . G 6 HOH A 67 867 517 HOH HOH . G 6 HOH A 68 868 837 HOH HOH . G 6 HOH A 69 869 895 HOH HOH . G 6 HOH A 70 870 880 HOH HOH . G 6 HOH A 71 871 886 HOH HOH . G 6 HOH A 72 872 882 HOH HOH . G 6 HOH A 73 873 891 HOH HOH . G 6 HOH A 74 874 892 HOH HOH . G 6 HOH A 75 875 911 HOH HOH . G 6 HOH A 76 876 884 HOH HOH . G 6 HOH A 77 877 840 HOH HOH . G 6 HOH A 78 878 505 HOH HOH . G 6 HOH A 79 879 520 HOH HOH . G 6 HOH A 80 880 871 HOH HOH . G 6 HOH A 81 881 910 HOH HOH . G 6 HOH A 82 882 898 HOH HOH . G 6 HOH A 83 883 904 HOH HOH . G 6 HOH A 84 884 817 HOH HOH . G 6 HOH A 85 885 887 HOH HOH . G 6 HOH A 86 886 870 HOH HOH . G 6 HOH A 87 887 861 HOH HOH . G 6 HOH A 88 888 818 HOH HOH . G 6 HOH A 89 889 879 HOH HOH . G 6 HOH A 90 890 863 HOH HOH . G 6 HOH A 91 891 864 HOH HOH . G 6 HOH A 92 892 1 HOH HOH . G 6 HOH A 93 893 869 HOH HOH . G 6 HOH A 94 894 901 HOH HOH . G 6 HOH A 95 895 890 HOH HOH . G 6 HOH A 96 896 899 HOH HOH . G 6 HOH A 97 897 821 HOH HOH . G 6 HOH A 98 898 819 HOH HOH . G 6 HOH A 99 899 866 HOH HOH . G 6 HOH A 100 900 905 HOH HOH . G 6 HOH A 101 901 900 HOH HOH . G 6 HOH A 102 902 893 HOH HOH . G 6 HOH A 103 903 894 HOH HOH . G 6 HOH A 104 904 872 HOH HOH . G 6 HOH A 105 905 909 HOH HOH . G 6 HOH A 106 906 874 HOH HOH . G 6 HOH A 107 907 896 HOH HOH . G 6 HOH A 108 908 862 HOH HOH . G 6 HOH A 109 909 875 HOH HOH . G 6 HOH A 110 910 523 HOH HOH . G 6 HOH A 111 911 897 HOH HOH . G 6 HOH A 112 912 902 HOH HOH . G 6 HOH A 113 913 908 HOH HOH . G 6 HOH A 114 914 881 HOH HOH . G 6 HOH A 115 915 815 HOH HOH . G 6 HOH A 116 916 903 HOH HOH . G 6 HOH A 117 917 912 HOH HOH . G 6 HOH A 118 918 907 HOH HOH . H 6 HOH B 1 501 509 HOH HOH . H 6 HOH B 2 502 503 HOH HOH . H 6 HOH B 3 503 504 HOH HOH . H 6 HOH B 4 504 501 HOH HOH . H 6 HOH B 5 505 506 HOH HOH . H 6 HOH B 6 506 513 HOH HOH . H 6 HOH B 7 507 511 HOH HOH . H 6 HOH B 8 508 518 HOH HOH . H 6 HOH B 9 509 510 HOH HOH . H 6 HOH B 10 510 514 HOH HOH . H 6 HOH B 11 511 512 HOH HOH . H 6 HOH B 12 512 502 HOH HOH . H 6 HOH B 13 513 516 HOH HOH . H 6 HOH B 14 514 508 HOH HOH . H 6 HOH B 15 515 522 HOH HOH . H 6 HOH B 16 516 525 HOH HOH . H 6 HOH B 17 517 524 HOH HOH . H 6 HOH B 18 518 515 HOH HOH . H 6 HOH B 19 519 527 HOH HOH . H 6 HOH B 20 520 528 HOH HOH . H 6 HOH B 21 521 521 HOH HOH . H 6 HOH B 22 522 526 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CS MTA . . . C 3 21.454 -38.792 -5.738 1 23.33 ? CS MTA 701 A 1 HETATM 2 S S5' MTA . . . C 3 20.102 -39.83 -6.223 1 23.27 ? S5' MTA 701 A 1 HETATM 3 C C5' MTA . . . C 3 18.702 -38.759 -6.046 1 22.54 ? C5' MTA 701 A 1 HETATM 4 C C4' MTA . . . C 3 18.669 -38.032 -4.699 1 22.06 ? C4' MTA 701 A 1 HETATM 5 O O4' MTA . . . C 3 17.531 -37.179 -4.649 1 21.36 ? O4' MTA 701 A 1 HETATM 6 C C2' MTA . . . C 3 17.169 -38.643 -2.9 1 22.02 ? C2' MTA 701 A 1 HETATM 7 O O2' MTA . . . C 3 17.119 -38.771 -1.469 1 22.54 ? O2' MTA 701 A 1 HETATM 8 C C3' MTA . . . C 3 18.535 -38.969 -3.506 1 22.34 ? C3' MTA 701 A 1 HETATM 9 O O3' MTA . . . C 3 19.62 -38.762 -2.582 1 23.06 ? O3' MTA 701 A 1 HETATM 10 C C1' MTA . . . C 3 16.906 -37.236 -3.373 1 21.24 ? C1' MTA 701 A 1 HETATM 11 N N9 MTA . . . C 3 15.499 -36.927 -3.61 1 20.57 ? N9 MTA 701 A 1 HETATM 12 C C8 MTA . . . C 3 14.659 -37.633 -4.362 1 20.39 ? C8 MTA 701 A 1 HETATM 13 N N7 MTA . . . C 3 13.445 -37.058 -4.409 1 20.22 ? N7 MTA 701 A 1 HETATM 14 C C5 MTA . . . C 3 13.512 -35.95 -3.684 1 20.61 ? C5 MTA 701 A 1 HETATM 15 C C6 MTA . . . C 3 12.568 -34.881 -3.329 1 20.92 ? C6 MTA 701 A 1 HETATM 16 N N6 MTA . . . C 3 11.304 -34.9 -3.785 1 21.03 ? N6 MTA 701 A 1 HETATM 17 N N1 MTA . . . C 3 13.029 -33.889 -2.553 1 21.19 ? N1 MTA 701 A 1 HETATM 18 C C2 MTA . . . C 3 14.307 -33.871 -2.089 1 21.2 ? C2 MTA 701 A 1 HETATM 19 N N3 MTA . . . C 3 15.22 -34.823 -2.369 1 20.83 ? N3 MTA 701 A 1 HETATM 20 C C4 MTA . . . C 3 14.876 -35.862 -3.161 1 20.66 ? C4 MTA 701 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 21 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 288 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 20 #