data_7ZV2 # _model_server_result.job_id mskX4XIj9hWUibdjwEDKYA _model_server_result.datetime_utc '2024-10-18 10:17:35' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zv2 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"F","auth_seq_id":401}' # _entry.id 7ZV2 # _exptl.entry_id 7ZV2 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZV2 _cell.length_a 104.526 _cell.length_b 138.844 _cell.length_c 179.024 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZV2 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 5 E N N ? 5 F N N # _struct_conn.conn_type_id disulf _struct_conn.details ? _struct_conn.id disulf1 _struct_conn.ptnr1_label_asym_id B _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 216 _struct_conn.ptnr1_auth_asym_id B _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 208 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id SG _struct_conn.ptnr2_label_comp_id CYS _struct_conn.ptnr2_label_seq_id 255 _struct_conn.ptnr2_auth_asym_id B _struct_conn.ptnr2_auth_comp_id CYS _struct_conn.ptnr2_auth_seq_id 247 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 2.027 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7ZV2 _atom_sites.fract_transf_matrix[1][1] 0.009567 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.007202 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005586 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 MTA A 1 701 1000 MTA MTA . D 4 UNL A 1 702 1001 UNL UNL . E 5 GOL A 1 703 2 GOL GOL . F 5 GOL B 1 401 1 GOL GOL . G 6 HOH A 1 801 128 HOH HOH . G 6 HOH A 2 802 164 HOH HOH . G 6 HOH A 3 803 186 HOH HOH . G 6 HOH A 4 804 17 HOH HOH . G 6 HOH A 5 805 140 HOH HOH . G 6 HOH A 6 806 83 HOH HOH . G 6 HOH A 7 807 12 HOH HOH . G 6 HOH A 8 808 65 HOH HOH . G 6 HOH A 9 809 145 HOH HOH . G 6 HOH A 10 810 84 HOH HOH . G 6 HOH A 11 811 170 HOH HOH . G 6 HOH A 12 812 142 HOH HOH . G 6 HOH A 13 813 54 HOH HOH . G 6 HOH A 14 814 129 HOH HOH . G 6 HOH A 15 815 144 HOH HOH . G 6 HOH A 16 816 30 HOH HOH . G 6 HOH A 17 817 72 HOH HOH . G 6 HOH A 18 818 7 HOH HOH . G 6 HOH A 19 819 55 HOH HOH . G 6 HOH A 20 820 146 HOH HOH . G 6 HOH A 21 821 64 HOH HOH . G 6 HOH A 22 822 36 HOH HOH . G 6 HOH A 23 823 158 HOH HOH . G 6 HOH A 24 824 46 HOH HOH . G 6 HOH A 25 825 166 HOH HOH . G 6 HOH A 26 826 161 HOH HOH . G 6 HOH A 27 827 138 HOH HOH . G 6 HOH A 28 828 4 HOH HOH . G 6 HOH A 29 829 51 HOH HOH . G 6 HOH A 30 830 132 HOH HOH . G 6 HOH A 31 831 3 HOH HOH . G 6 HOH A 32 832 141 HOH HOH . G 6 HOH A 33 833 136 HOH HOH . G 6 HOH A 34 834 157 HOH HOH . G 6 HOH A 35 835 139 HOH HOH . G 6 HOH A 36 836 205 HOH HOH . G 6 HOH A 37 837 53 HOH HOH . G 6 HOH A 38 838 79 HOH HOH . G 6 HOH A 39 839 167 HOH HOH . G 6 HOH A 40 840 37 HOH HOH . G 6 HOH A 41 841 200 HOH HOH . G 6 HOH A 42 842 38 HOH HOH . G 6 HOH A 43 843 86 HOH HOH . G 6 HOH A 44 844 152 HOH HOH . G 6 HOH A 45 845 137 HOH HOH . G 6 HOH A 46 846 76 HOH HOH . G 6 HOH A 47 847 174 HOH HOH . G 6 HOH A 48 848 59 HOH HOH . G 6 HOH A 49 849 156 HOH HOH . G 6 HOH A 50 850 159 HOH HOH . G 6 HOH A 51 851 160 HOH HOH . G 6 HOH A 52 852 143 HOH HOH . G 6 HOH A 53 853 73 HOH HOH . G 6 HOH A 54 854 25 HOH HOH . G 6 HOH A 55 855 11 HOH HOH . G 6 HOH A 56 856 131 HOH HOH . G 6 HOH A 57 857 94 HOH HOH . G 6 HOH A 58 858 154 HOH HOH . G 6 HOH A 59 859 16 HOH HOH . G 6 HOH A 60 860 87 HOH HOH . G 6 HOH A 61 861 78 HOH HOH . G 6 HOH A 62 862 80 HOH HOH . G 6 HOH A 63 863 135 HOH HOH . G 6 HOH A 64 864 81 HOH HOH . G 6 HOH A 65 865 178 HOH HOH . G 6 HOH A 66 866 28 HOH HOH . G 6 HOH A 67 867 43 HOH HOH . G 6 HOH A 68 868 9 HOH HOH . G 6 HOH A 69 869 184 HOH HOH . G 6 HOH A 70 870 89 HOH HOH . G 6 HOH A 71 871 155 HOH HOH . G 6 HOH A 72 872 8 HOH HOH . G 6 HOH A 73 873 175 HOH HOH . G 6 HOH A 74 874 60 HOH HOH . G 6 HOH A 75 875 52 HOH HOH . G 6 HOH A 76 876 150 HOH HOH . G 6 HOH A 77 877 151 HOH HOH . G 6 HOH A 78 878 188 HOH HOH . G 6 HOH A 79 879 134 HOH HOH . G 6 HOH A 80 880 182 HOH HOH . G 6 HOH A 81 881 1 HOH HOH . G 6 HOH A 82 882 14 HOH HOH . G 6 HOH A 83 883 90 HOH HOH . G 6 HOH A 84 884 67 HOH HOH . G 6 HOH A 85 885 169 HOH HOH . G 6 HOH A 86 886 82 HOH HOH . G 6 HOH A 87 887 221 HOH HOH . G 6 HOH A 88 888 40 HOH HOH . G 6 HOH A 89 889 198 HOH HOH . G 6 HOH A 90 890 45 HOH HOH . G 6 HOH A 91 891 85 HOH HOH . G 6 HOH A 92 892 70 HOH HOH . G 6 HOH A 93 893 153 HOH HOH . G 6 HOH A 94 894 210 HOH HOH . G 6 HOH A 95 895 26 HOH HOH . G 6 HOH A 96 896 68 HOH HOH . G 6 HOH A 97 897 173 HOH HOH . G 6 HOH A 98 898 179 HOH HOH . G 6 HOH A 99 899 149 HOH HOH . G 6 HOH A 100 900 62 HOH HOH . G 6 HOH A 101 901 77 HOH HOH . G 6 HOH A 102 902 163 HOH HOH . G 6 HOH A 103 903 201 HOH HOH . G 6 HOH A 104 904 176 HOH HOH . G 6 HOH A 105 905 10 HOH HOH . G 6 HOH A 106 906 130 HOH HOH . G 6 HOH A 107 907 172 HOH HOH . G 6 HOH A 108 908 32 HOH HOH . G 6 HOH A 109 909 181 HOH HOH . G 6 HOH A 110 910 71 HOH HOH . G 6 HOH A 111 911 133 HOH HOH . G 6 HOH A 112 912 180 HOH HOH . G 6 HOH A 113 913 34 HOH HOH . G 6 HOH A 114 914 44 HOH HOH . G 6 HOH A 115 915 168 HOH HOH . G 6 HOH A 116 916 177 HOH HOH . G 6 HOH A 117 917 183 HOH HOH . G 6 HOH A 118 918 190 HOH HOH . G 6 HOH A 119 919 27 HOH HOH . G 6 HOH A 120 920 50 HOH HOH . G 6 HOH A 121 921 22 HOH HOH . G 6 HOH A 122 922 75 HOH HOH . G 6 HOH A 123 923 61 HOH HOH . G 6 HOH A 124 924 66 HOH HOH . G 6 HOH A 125 925 197 HOH HOH . G 6 HOH A 126 926 2 HOH HOH . G 6 HOH A 127 927 31 HOH HOH . G 6 HOH A 128 928 185 HOH HOH . G 6 HOH A 129 929 18 HOH HOH . G 6 HOH A 130 930 219 HOH HOH . G 6 HOH A 131 931 171 HOH HOH . G 6 HOH A 132 932 202 HOH HOH . G 6 HOH A 133 933 33 HOH HOH . G 6 HOH A 134 934 193 HOH HOH . G 6 HOH A 135 935 39 HOH HOH . G 6 HOH A 136 936 191 HOH HOH . G 6 HOH A 137 937 13 HOH HOH . G 6 HOH A 138 938 74 HOH HOH . G 6 HOH A 139 939 203 HOH HOH . G 6 HOH A 140 940 207 HOH HOH . G 6 HOH A 141 941 199 HOH HOH . G 6 HOH A 142 942 165 HOH HOH . G 6 HOH A 143 943 92 HOH HOH . G 6 HOH A 144 944 42 HOH HOH . G 6 HOH A 145 945 118 HOH HOH . G 6 HOH A 146 946 189 HOH HOH . G 6 HOH A 147 947 204 HOH HOH . G 6 HOH A 148 948 162 HOH HOH . G 6 HOH A 149 949 214 HOH HOH . G 6 HOH A 150 950 148 HOH HOH . G 6 HOH A 151 951 69 HOH HOH . G 6 HOH A 152 952 93 HOH HOH . G 6 HOH A 153 953 6 HOH HOH . G 6 HOH A 154 954 208 HOH HOH . G 6 HOH A 155 955 48 HOH HOH . G 6 HOH A 156 956 187 HOH HOH . G 6 HOH A 157 957 88 HOH HOH . G 6 HOH A 158 958 15 HOH HOH . G 6 HOH A 159 959 147 HOH HOH . G 6 HOH A 160 960 91 HOH HOH . G 6 HOH A 161 961 58 HOH HOH . G 6 HOH A 162 962 209 HOH HOH . G 6 HOH A 163 963 226 HOH HOH . G 6 HOH A 164 964 49 HOH HOH . G 6 HOH A 165 965 230 HOH HOH . G 6 HOH A 166 966 206 HOH HOH . G 6 HOH A 167 967 29 HOH HOH . G 6 HOH A 168 968 56 HOH HOH . G 6 HOH A 169 969 231 HOH HOH . G 6 HOH A 170 970 63 HOH HOH . G 6 HOH A 171 971 212 HOH HOH . G 6 HOH A 172 972 24 HOH HOH . G 6 HOH A 173 973 23 HOH HOH . G 6 HOH A 174 974 192 HOH HOH . G 6 HOH A 175 975 195 HOH HOH . G 6 HOH A 176 976 218 HOH HOH . G 6 HOH A 177 977 57 HOH HOH . G 6 HOH A 178 978 211 HOH HOH . G 6 HOH A 179 979 41 HOH HOH . G 6 HOH A 180 980 220 HOH HOH . G 6 HOH A 181 981 194 HOH HOH . G 6 HOH A 182 982 225 HOH HOH . G 6 HOH A 183 983 227 HOH HOH . G 6 HOH A 184 984 232 HOH HOH . G 6 HOH A 185 985 222 HOH HOH . G 6 HOH A 186 986 196 HOH HOH . G 6 HOH A 187 987 217 HOH HOH . G 6 HOH A 188 988 35 HOH HOH . G 6 HOH A 189 989 229 HOH HOH . G 6 HOH A 190 990 213 HOH HOH . G 6 HOH A 191 991 215 HOH HOH . G 6 HOH A 192 992 224 HOH HOH . G 6 HOH A 193 993 228 HOH HOH . G 6 HOH A 194 994 223 HOH HOH . G 6 HOH A 195 995 216 HOH HOH . G 6 HOH A 196 996 95 HOH HOH . H 6 HOH B 1 501 102 HOH HOH . H 6 HOH B 2 502 107 HOH HOH . H 6 HOH B 3 503 21 HOH HOH . H 6 HOH B 4 504 111 HOH HOH . H 6 HOH B 5 505 104 HOH HOH . H 6 HOH B 6 506 114 HOH HOH . H 6 HOH B 7 507 121 HOH HOH . H 6 HOH B 8 508 105 HOH HOH . H 6 HOH B 9 509 20 HOH HOH . H 6 HOH B 10 510 106 HOH HOH . H 6 HOH B 11 511 112 HOH HOH . H 6 HOH B 12 512 109 HOH HOH . H 6 HOH B 13 513 47 HOH HOH . H 6 HOH B 14 514 115 HOH HOH . H 6 HOH B 15 515 97 HOH HOH . H 6 HOH B 16 516 103 HOH HOH . H 6 HOH B 17 517 110 HOH HOH . H 6 HOH B 18 518 108 HOH HOH . H 6 HOH B 19 519 19 HOH HOH . H 6 HOH B 20 520 116 HOH HOH . H 6 HOH B 21 521 101 HOH HOH . H 6 HOH B 22 522 117 HOH HOH . H 6 HOH B 23 523 123 HOH HOH . H 6 HOH B 24 524 98 HOH HOH . H 6 HOH B 25 525 5 HOH HOH . H 6 HOH B 26 526 99 HOH HOH . H 6 HOH B 27 527 113 HOH HOH . H 6 HOH B 28 528 119 HOH HOH . H 6 HOH B 29 529 124 HOH HOH . H 6 HOH B 30 530 96 HOH HOH . H 6 HOH B 31 531 126 HOH HOH . H 6 HOH B 32 532 120 HOH HOH . H 6 HOH B 33 533 122 HOH HOH . H 6 HOH B 34 534 127 HOH HOH . H 6 HOH B 35 535 100 HOH HOH . H 6 HOH B 36 536 125 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . F 5 11.497 -102.121 -44.758 1 67.85 ? C1 GOL 401 B 1 HETATM 2 O O1 GOL . . . F 5 10.074 -102.12 -44.829 1 67.17 ? O1 GOL 401 B 1 HETATM 3 C C2 GOL . . . F 5 11.986 -101.4 -43.52 1 67.83 ? C2 GOL 401 B 1 HETATM 4 O O2 GOL . . . F 5 13.406 -101.266 -43.551 1 67.76 ? O2 GOL 401 B 1 HETATM 5 C C3 GOL . . . F 5 11.355 -100.037 -43.359 1 68.68 ? C3 GOL 401 B 1 HETATM 6 O O3 GOL . . . F 5 10.316 -100.069 -42.388 1 69.18 ? O3 GOL 401 B 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 19 _model_server_stats.create_model_time_ms 37 _model_server_stats.query_time_ms 310 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #