data_7ZV3 # _model_server_result.job_id dc1eWCElTbZVkZ1KbhsUhA _model_server_result.datetime_utc '2024-11-15 05:58:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zv3 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7ZV3 # _exptl.entry_id 7ZV3 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZV3 _cell.length_a 86.65 _cell.length_b 97.419 _cell.length_c 131.996 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZV3 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 4 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 328 A CYS 308 1_555 B SG CYS 328 B CYS 308 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.059 ? metalc ? metalc1 A NE2 HIS 366 A HIS 346 1_555 C FE HEM . A HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.306 ? metalc ? metalc2 C FE HEM . A HEM 501 1_555 D N11 RCT . A RCT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.981 ? metalc ? metalc3 B NE2 HIS 366 B HIS 346 1_555 G FE HEM . B HEM 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.192 ? metalc ? metalc4 G FE HEM . B HEM 501 1_555 H N11 RCT . B RCT 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.965 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7ZV3 _atom_sites.fract_transf_matrix[1][1] 0.011541 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010265 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007576 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 501 404 HEM HEM . D 3 RCT A 1 502 501 RCT L4M . E 4 GOL A 1 503 502 GOL GOL . F 5 SO4 A 1 504 503 SO4 SO4 . G 2 HEM B 1 501 404 HEM HEM . H 3 RCT B 1 502 501 RCT L4M . I 5 SO4 B 1 503 502 SO4 SO4 . J 6 HOH A 1 601 45 HOH HOH . J 6 HOH A 2 602 32 HOH HOH . J 6 HOH A 3 603 33 HOH HOH . J 6 HOH A 4 604 35 HOH HOH . J 6 HOH A 5 605 11 HOH HOH . J 6 HOH A 6 606 37 HOH HOH . J 6 HOH A 7 607 4 HOH HOH . J 6 HOH A 8 608 3 HOH HOH . J 6 HOH A 9 609 22 HOH HOH . J 6 HOH A 10 610 19 HOH HOH . J 6 HOH A 11 611 23 HOH HOH . J 6 HOH A 12 612 1 HOH HOH . J 6 HOH A 13 613 28 HOH HOH . J 6 HOH A 14 614 46 HOH HOH . J 6 HOH A 15 615 10 HOH HOH . J 6 HOH A 16 616 13 HOH HOH . J 6 HOH A 17 617 52 HOH HOH . J 6 HOH A 18 618 51 HOH HOH . J 6 HOH A 19 619 7 HOH HOH . J 6 HOH A 20 620 21 HOH HOH . J 6 HOH A 21 621 5 HOH HOH . J 6 HOH A 22 622 2 HOH HOH . J 6 HOH A 23 623 31 HOH HOH . J 6 HOH A 24 624 42 HOH HOH . J 6 HOH A 25 625 40 HOH HOH . J 6 HOH A 26 626 54 HOH HOH . K 6 HOH B 1 601 49 HOH HOH . K 6 HOH B 2 602 60 HOH HOH . K 6 HOH B 3 603 9 HOH HOH . K 6 HOH B 4 604 27 HOH HOH . K 6 HOH B 5 605 61 HOH HOH . K 6 HOH B 6 606 18 HOH HOH . K 6 HOH B 7 607 53 HOH HOH . K 6 HOH B 8 608 34 HOH HOH . K 6 HOH B 9 609 14 HOH HOH . K 6 HOH B 10 610 50 HOH HOH . K 6 HOH B 11 611 26 HOH HOH . K 6 HOH B 12 612 57 HOH HOH . K 6 HOH B 13 613 6 HOH HOH . K 6 HOH B 14 614 29 HOH HOH . K 6 HOH B 15 615 12 HOH HOH . K 6 HOH B 16 616 8 HOH HOH . K 6 HOH B 17 617 25 HOH HOH . K 6 HOH B 18 618 48 HOH HOH . K 6 HOH B 19 619 36 HOH HOH . K 6 HOH B 20 620 20 HOH HOH . K 6 HOH B 21 621 39 HOH HOH . K 6 HOH B 22 622 55 HOH HOH . K 6 HOH B 23 623 24 HOH HOH . K 6 HOH B 24 624 47 HOH HOH . K 6 HOH B 25 625 38 HOH HOH . K 6 HOH B 26 626 41 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 4 -29.781 19.866 -35.469 1 84.39 ? C1 GOL 503 A 1 HETATM 2 O O1 GOL . . . E 4 -28.953 18.838 -35.931 1 82.49 ? O1 GOL 503 A 1 HETATM 3 C C2 GOL . . . E 4 -28.897 20.737 -34.544 1 79.92 ? C2 GOL 503 A 1 HETATM 4 O O2 GOL . . . E 4 -28.519 21.964 -35.131 1 78.57 ? O2 GOL 503 A 1 HETATM 5 C C3 GOL . . . E 4 -29.703 20.875 -33.22 1 79.74 ? C3 GOL 503 A 1 HETATM 6 O O3 GOL . . . E 4 -28.806 20.622 -32.149 1 78.84 ? O3 GOL 503 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 11 _model_server_stats.query_time_ms 256 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #