data_7ZV5
#
_model_server_result.job_id            jJwbqu1_aj33fVDVtYXJvg 
_model_server_result.datetime_utc      '2024-11-21 09:23:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zv5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":402}' 
#
_entry.id    7ZV5 
#
_exptl.entry_id    7ZV5 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              78.133 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'DIMETHYL SULFOXIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          117.14 
_cell.angle_gamma         90 
_cell.entry_id            7ZV5 
_cell.length_a            97.753 
_cell.length_b            83.137 
_cell.length_c            54.828 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZV5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        5 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'C 1 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 2_555 -x,y,-z -1 0 0 0 1 0 0 0 -1 0 0 0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 145 A CYS 145 1_555 B C HSV 4 B HSV 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.802 ? 
covale ? covale2 B C ACE 1 B ACE 1 1_555 B N GLY 2 B GLY 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
covale ? covale3 B C PHE 3 B PHE 3 1_555 B N HSV 4 B HSV 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? 
#
_chem_comp.formula           'C2 H6 O S' 
_chem_comp.formula_weight    78.133 
_chem_comp.id                DMS 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'DIMETHYL SULFOXIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
S O DMS doub 89 n n 
S C1 DMS sing 90 n n 
S C2 DMS sing 91 n n 
C1 H11 DMS sing 92 n n 
C1 H12 DMS sing 93 n n 
C1 H13 DMS sing 94 n n 
C2 H21 DMS sing 95 n n 
C2 H22 DMS sing 96 n n 
C2 H23 DMS sing 97 n n 
#
_atom_sites.entry_id                     7ZV5 
_atom_sites.fract_transf_matrix[1][1]    0.01023 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.005244 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.012028 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.020496 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 DMS A 1 401 1 DMS DMS . 
D 3 DMS A 1 402 2 DMS DMS . 
E 4 HOH A 1 501 13 HOH HOH . 
E 4 HOH A 2 502 110 HOH HOH . 
E 4 HOH A 3 503 45 HOH HOH . 
E 4 HOH A 4 504 82 HOH HOH . 
E 4 HOH A 5 505 7 HOH HOH . 
E 4 HOH A 6 506 1 HOH HOH . 
E 4 HOH A 7 507 85 HOH HOH . 
E 4 HOH A 8 508 131 HOH HOH . 
E 4 HOH A 9 509 112 HOH HOH . 
E 4 HOH A 10 510 20 HOH HOH . 
E 4 HOH A 11 511 52 HOH HOH . 
E 4 HOH A 12 512 40 HOH HOH . 
E 4 HOH A 13 513 120 HOH HOH . 
E 4 HOH A 14 514 101 HOH HOH . 
E 4 HOH A 15 515 133 HOH HOH . 
E 4 HOH A 16 516 36 HOH HOH . 
E 4 HOH A 17 517 16 HOH HOH . 
E 4 HOH A 18 518 15 HOH HOH . 
E 4 HOH A 19 519 74 HOH HOH . 
E 4 HOH A 20 520 55 HOH HOH . 
E 4 HOH A 21 521 25 HOH HOH . 
E 4 HOH A 22 522 27 HOH HOH . 
E 4 HOH A 23 523 14 HOH HOH . 
E 4 HOH A 24 524 35 HOH HOH . 
E 4 HOH A 25 525 129 HOH HOH . 
E 4 HOH A 26 526 28 HOH HOH . 
E 4 HOH A 27 527 51 HOH HOH . 
E 4 HOH A 28 528 72 HOH HOH . 
E 4 HOH A 29 529 38 HOH HOH . 
E 4 HOH A 30 530 50 HOH HOH . 
E 4 HOH A 31 531 30 HOH HOH . 
E 4 HOH A 32 532 10 HOH HOH . 
E 4 HOH A 33 533 103 HOH HOH . 
E 4 HOH A 34 534 89 HOH HOH . 
E 4 HOH A 35 535 137 HOH HOH . 
E 4 HOH A 36 536 88 HOH HOH . 
E 4 HOH A 37 537 34 HOH HOH . 
E 4 HOH A 38 538 49 HOH HOH . 
E 4 HOH A 39 539 57 HOH HOH . 
E 4 HOH A 40 540 21 HOH HOH . 
E 4 HOH A 41 541 5 HOH HOH . 
E 4 HOH A 42 542 106 HOH HOH . 
E 4 HOH A 43 543 79 HOH HOH . 
E 4 HOH A 44 544 61 HOH HOH . 
E 4 HOH A 45 545 3 HOH HOH . 
E 4 HOH A 46 546 46 HOH HOH . 
E 4 HOH A 47 547 60 HOH HOH . 
E 4 HOH A 48 548 11 HOH HOH . 
E 4 HOH A 49 549 73 HOH HOH . 
E 4 HOH A 50 550 9 HOH HOH . 
E 4 HOH A 51 551 22 HOH HOH . 
E 4 HOH A 52 552 81 HOH HOH . 
E 4 HOH A 53 553 80 HOH HOH . 
E 4 HOH A 54 554 6 HOH HOH . 
E 4 HOH A 55 555 76 HOH HOH . 
E 4 HOH A 56 556 29 HOH HOH . 
E 4 HOH A 57 557 33 HOH HOH . 
E 4 HOH A 58 558 70 HOH HOH . 
E 4 HOH A 59 559 39 HOH HOH . 
E 4 HOH A 60 560 4 HOH HOH . 
E 4 HOH A 61 561 67 HOH HOH . 
E 4 HOH A 62 562 98 HOH HOH . 
E 4 HOH A 63 563 26 HOH HOH . 
E 4 HOH A 64 564 134 HOH HOH . 
E 4 HOH A 65 565 2 HOH HOH . 
E 4 HOH A 66 566 119 HOH HOH . 
E 4 HOH A 67 567 37 HOH HOH . 
E 4 HOH A 68 568 18 HOH HOH . 
E 4 HOH A 69 569 31 HOH HOH . 
E 4 HOH A 70 570 69 HOH HOH . 
E 4 HOH A 71 571 65 HOH HOH . 
E 4 HOH A 72 572 66 HOH HOH . 
E 4 HOH A 73 573 108 HOH HOH . 
E 4 HOH A 74 574 105 HOH HOH . 
E 4 HOH A 75 575 87 HOH HOH . 
E 4 HOH A 76 576 109 HOH HOH . 
E 4 HOH A 77 577 132 HOH HOH . 
E 4 HOH A 78 578 135 HOH HOH . 
E 4 HOH A 79 579 32 HOH HOH . 
E 4 HOH A 80 580 54 HOH HOH . 
E 4 HOH A 81 581 42 HOH HOH . 
E 4 HOH A 82 582 127 HOH HOH . 
E 4 HOH A 83 583 17 HOH HOH . 
E 4 HOH A 84 584 53 HOH HOH . 
E 4 HOH A 85 585 56 HOH HOH . 
E 4 HOH A 86 586 59 HOH HOH . 
E 4 HOH A 87 587 75 HOH HOH . 
E 4 HOH A 88 588 99 HOH HOH . 
E 4 HOH A 89 589 71 HOH HOH . 
E 4 HOH A 90 590 113 HOH HOH . 
E 4 HOH A 91 591 91 HOH HOH . 
E 4 HOH A 92 592 48 HOH HOH . 
E 4 HOH A 93 593 100 HOH HOH . 
E 4 HOH A 94 594 78 HOH HOH . 
E 4 HOH A 95 595 63 HOH HOH . 
E 4 HOH A 96 596 43 HOH HOH . 
E 4 HOH A 97 597 117 HOH HOH . 
E 4 HOH A 98 598 62 HOH HOH . 
E 4 HOH A 99 599 125 HOH HOH . 
E 4 HOH A 100 600 138 HOH HOH . 
E 4 HOH A 101 601 64 HOH HOH . 
E 4 HOH A 102 602 24 HOH HOH . 
E 4 HOH A 103 603 107 HOH HOH . 
E 4 HOH A 104 604 23 HOH HOH . 
E 4 HOH A 105 605 19 HOH HOH . 
E 4 HOH A 106 606 86 HOH HOH . 
E 4 HOH A 107 607 124 HOH HOH . 
E 4 HOH A 108 608 111 HOH HOH . 
E 4 HOH A 109 609 97 HOH HOH . 
E 4 HOH A 110 610 90 HOH HOH . 
E 4 HOH A 111 611 118 HOH HOH . 
E 4 HOH A 112 612 8 HOH HOH . 
E 4 HOH A 113 613 93 HOH HOH . 
E 4 HOH A 114 614 41 HOH HOH . 
E 4 HOH A 115 615 47 HOH HOH . 
E 4 HOH A 116 616 84 HOH HOH . 
E 4 HOH A 117 617 44 HOH HOH . 
E 4 HOH A 118 618 83 HOH HOH . 
E 4 HOH A 119 619 92 HOH HOH . 
E 4 HOH A 120 620 58 HOH HOH . 
E 4 HOH A 121 621 123 HOH HOH . 
E 4 HOH A 122 622 12 HOH HOH . 
E 4 HOH A 123 623 130 HOH HOH . 
E 4 HOH A 124 624 104 HOH HOH . 
E 4 HOH A 125 625 114 HOH HOH . 
E 4 HOH A 126 626 121 HOH HOH . 
E 4 HOH A 127 627 94 HOH HOH . 
E 4 HOH A 128 628 96 HOH HOH . 
E 4 HOH A 129 629 126 HOH HOH . 
E 4 HOH A 130 630 139 HOH HOH . 
E 4 HOH A 131 631 115 HOH HOH . 
E 4 HOH A 132 632 116 HOH HOH . 
E 4 HOH A 133 633 136 HOH HOH . 
E 4 HOH A 134 634 95 HOH HOH . 
E 4 HOH A 135 635 77 HOH HOH . 
E 4 HOH A 136 636 122 HOH HOH . 
E 4 HOH A 137 637 102 HOH HOH . 
F 4 HOH B 1 501 68 HOH HOH . 
F 4 HOH B 2 502 128 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 S S DMS . . . D 3 10.304 4.209 27.369 1 69.31 ? S DMS 402 A 1 
HETATM 2 O O DMS . . . D 3 10.852 2.882 27.033 1 69.21 ? O DMS 402 A 1 
HETATM 3 C C1 DMS . . . D 3 11.355 5.353 26.522 1 69.3 ? C1 DMS 402 A 1 
HETATM 4 C C2 DMS . . . D 3 8.867 4.377 26.351 1 69.22 ? C2 DMS 402 A 1 
#
_model_server_stats.io_time_ms              71 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    3 
_model_server_stats.query_time_ms           314 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#