data_7ZVB # _model_server_result.job_id mFZZJJr2WZwsxW6KprfClA _model_server_result.datetime_utc '2024-12-14 07:25:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zvb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":503}' # _entry.id 7ZVB # _exptl.entry_id 7ZVB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 150.173 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'TRIETHYLENE GLYCOL' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.57 _cell.angle_gamma 90 _cell.entry_id 7ZVB _cell.length_a 54.76 _cell.length_b 49.95 _cell.length_c 59.86 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZVB _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 E N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O6 HO6 . sing 4 ? 2 5 4 MAN MAN C1 O1 . O3 HO3 . sing 5 ? 2 6 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG A 601 NAG 2 n B NAG 2 B 2 NAG A 602 NAG 2 n B BMA 3 B 3 BMA A 603 BMA 2 n B MAN 4 B 4 MAN A 605 MAN 2 n B MAN 5 B 5 MAN A 606 MAN 2 n B MAN 6 B 6 MAN A 604 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 91 A CYS 219 1_555 A SG CYS 96 A CYS 224 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? disulf ? disulf2 A SG CYS 230 A CYS 358 1_555 A SG CYS 251 A CYS 379 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.047 ? covale ? covale1 A ND2 ASN 17 A ASN 145 1_555 C C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? covale ? covale2 A ND2 ASN 24 A ASN 152 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale3 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.385 ? covale ? covale4 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.382 ? covale ? covale5 B O6 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.391 ? covale ? covale6 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 6 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? covale ? covale7 B O3 MAN . B MAN 4 1_555 B C1 MAN . B MAN 5 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.429 ? # _chem_comp.formula 'C6 H14 O4' _chem_comp.formula_weight 150.173 _chem_comp.id PGE _chem_comp.mon_nstd_flag . _chem_comp.name 'TRIETHYLENE GLYCOL' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 PGE sing 315 n n C1 C2 PGE sing 316 n n C1 H1 PGE sing 317 n n C1 H12 PGE sing 318 n n O1 HO1 PGE sing 319 n n C2 O2 PGE sing 320 n n C2 H2 PGE sing 321 n n C2 H22 PGE sing 322 n n O2 C3 PGE sing 323 n n C3 C4 PGE sing 324 n n C3 H3 PGE sing 325 n n C3 H32 PGE sing 326 n n C4 O3 PGE sing 327 n n C4 H4 PGE sing 328 n n C4 H42 PGE sing 329 n n O4 C6 PGE sing 330 n n O4 HO4 PGE sing 331 n n C6 C5 PGE sing 332 n n C6 H6 PGE sing 333 n n C6 H62 PGE sing 334 n n C5 O3 PGE sing 335 n n C5 H5 PGE sing 336 n n C5 H52 PGE sing 337 n n # _atom_sites.entry_id 7ZVB _atom_sites.fract_transf_matrix[1][1] 0.018262 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.005434 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.02002 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.017429 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 NAG A 1 501 501 NAG NAG . D 4 PGE A 1 502 1 PGE PGE . E 4 PGE A 1 503 2 PGE PGE . F 5 HOH A 1 601 15 HOH HOH . F 5 HOH A 2 602 139 HOH HOH . F 5 HOH A 3 603 40 HOH HOH . F 5 HOH A 4 604 120 HOH HOH . F 5 HOH A 5 605 23 HOH HOH . F 5 HOH A 6 606 98 HOH HOH . F 5 HOH A 7 607 96 HOH HOH . F 5 HOH A 8 608 166 HOH HOH . F 5 HOH A 9 609 33 HOH HOH . F 5 HOH A 10 610 29 HOH HOH . F 5 HOH A 11 611 107 HOH HOH . F 5 HOH A 12 612 87 HOH HOH . F 5 HOH A 13 613 4 HOH HOH . F 5 HOH A 14 614 35 HOH HOH . F 5 HOH A 15 615 61 HOH HOH . F 5 HOH A 16 616 128 HOH HOH . F 5 HOH A 17 617 14 HOH HOH . F 5 HOH A 18 618 38 HOH HOH . F 5 HOH A 19 619 19 HOH HOH . F 5 HOH A 20 620 20 HOH HOH . F 5 HOH A 21 621 39 HOH HOH . F 5 HOH A 22 622 110 HOH HOH . F 5 HOH A 23 623 68 HOH HOH . F 5 HOH A 24 624 125 HOH HOH . F 5 HOH A 25 625 36 HOH HOH . F 5 HOH A 26 626 129 HOH HOH . F 5 HOH A 27 627 171 HOH HOH . F 5 HOH A 28 628 144 HOH HOH . F 5 HOH A 29 629 43 HOH HOH . F 5 HOH A 30 630 67 HOH HOH . F 5 HOH A 31 631 72 HOH HOH . F 5 HOH A 32 632 59 HOH HOH . F 5 HOH A 33 633 113 HOH HOH . F 5 HOH A 34 634 62 HOH HOH . F 5 HOH A 35 635 78 HOH HOH . F 5 HOH A 36 636 5 HOH HOH . F 5 HOH A 37 637 145 HOH HOH . F 5 HOH A 38 638 95 HOH HOH . F 5 HOH A 39 639 64 HOH HOH . F 5 HOH A 40 640 115 HOH HOH . F 5 HOH A 41 641 11 HOH HOH . F 5 HOH A 42 642 149 HOH HOH . F 5 HOH A 43 643 26 HOH HOH . F 5 HOH A 44 644 89 HOH HOH . F 5 HOH A 45 645 24 HOH HOH . F 5 HOH A 46 646 99 HOH HOH . F 5 HOH A 47 647 27 HOH HOH . F 5 HOH A 48 648 90 HOH HOH . F 5 HOH A 49 649 16 HOH HOH . F 5 HOH A 50 650 52 HOH HOH . F 5 HOH A 51 651 57 HOH HOH . F 5 HOH A 52 652 161 HOH HOH . F 5 HOH A 53 653 30 HOH HOH . F 5 HOH A 54 654 12 HOH HOH . F 5 HOH A 55 655 44 HOH HOH . F 5 HOH A 56 656 102 HOH HOH . F 5 HOH A 57 657 34 HOH HOH . F 5 HOH A 58 658 85 HOH HOH . F 5 HOH A 59 659 9 HOH HOH . F 5 HOH A 60 660 21 HOH HOH . F 5 HOH A 61 661 122 HOH HOH . F 5 HOH A 62 662 88 HOH HOH . F 5 HOH A 63 663 28 HOH HOH . F 5 HOH A 64 664 123 HOH HOH . F 5 HOH A 65 665 53 HOH HOH . F 5 HOH A 66 666 7 HOH HOH . F 5 HOH A 67 667 153 HOH HOH . F 5 HOH A 68 668 25 HOH HOH . F 5 HOH A 69 669 141 HOH HOH . F 5 HOH A 70 670 3 HOH HOH . F 5 HOH A 71 671 116 HOH HOH . F 5 HOH A 72 672 167 HOH HOH . F 5 HOH A 73 673 97 HOH HOH . F 5 HOH A 74 674 155 HOH HOH . F 5 HOH A 75 675 10 HOH HOH . F 5 HOH A 76 676 91 HOH HOH . F 5 HOH A 77 677 56 HOH HOH . F 5 HOH A 78 678 140 HOH HOH . F 5 HOH A 79 679 60 HOH HOH . F 5 HOH A 80 680 131 HOH HOH . F 5 HOH A 81 681 136 HOH HOH . F 5 HOH A 82 682 142 HOH HOH . F 5 HOH A 83 683 47 HOH HOH . F 5 HOH A 84 684 50 HOH HOH . F 5 HOH A 85 685 154 HOH HOH . F 5 HOH A 86 686 31 HOH HOH . F 5 HOH A 87 687 18 HOH HOH . F 5 HOH A 88 688 6 HOH HOH . F 5 HOH A 89 689 137 HOH HOH . F 5 HOH A 90 690 105 HOH HOH . F 5 HOH A 91 691 51 HOH HOH . F 5 HOH A 92 692 8 HOH HOH . F 5 HOH A 93 693 84 HOH HOH . F 5 HOH A 94 694 13 HOH HOH . F 5 HOH A 95 695 92 HOH HOH . F 5 HOH A 96 696 143 HOH HOH . F 5 HOH A 97 697 164 HOH HOH . F 5 HOH A 98 698 159 HOH HOH . F 5 HOH A 99 699 135 HOH HOH . F 5 HOH A 100 700 42 HOH HOH . F 5 HOH A 101 701 126 HOH HOH . F 5 HOH A 102 702 86 HOH HOH . F 5 HOH A 103 703 100 HOH HOH . F 5 HOH A 104 704 151 HOH HOH . F 5 HOH A 105 705 117 HOH HOH . F 5 HOH A 106 706 83 HOH HOH . F 5 HOH A 107 707 152 HOH HOH . F 5 HOH A 108 708 106 HOH HOH . F 5 HOH A 109 709 46 HOH HOH . F 5 HOH A 110 710 101 HOH HOH . F 5 HOH A 111 711 22 HOH HOH . F 5 HOH A 112 712 58 HOH HOH . F 5 HOH A 113 713 17 HOH HOH . F 5 HOH A 114 714 124 HOH HOH . F 5 HOH A 115 715 41 HOH HOH . F 5 HOH A 116 716 150 HOH HOH . F 5 HOH A 117 717 127 HOH HOH . F 5 HOH A 118 718 69 HOH HOH . F 5 HOH A 119 719 157 HOH HOH . F 5 HOH A 120 720 163 HOH HOH . F 5 HOH A 121 721 77 HOH HOH . F 5 HOH A 122 722 73 HOH HOH . F 5 HOH A 123 723 132 HOH HOH . F 5 HOH A 124 724 66 HOH HOH . F 5 HOH A 125 725 75 HOH HOH . F 5 HOH A 126 726 130 HOH HOH . F 5 HOH A 127 727 65 HOH HOH . F 5 HOH A 128 728 168 HOH HOH . F 5 HOH A 129 729 63 HOH HOH . F 5 HOH A 130 730 138 HOH HOH . F 5 HOH A 131 731 37 HOH HOH . F 5 HOH A 132 732 79 HOH HOH . F 5 HOH A 133 733 45 HOH HOH . F 5 HOH A 134 734 32 HOH HOH . F 5 HOH A 135 735 118 HOH HOH . F 5 HOH A 136 736 148 HOH HOH . F 5 HOH A 137 737 49 HOH HOH . F 5 HOH A 138 738 104 HOH HOH . F 5 HOH A 139 739 146 HOH HOH . F 5 HOH A 140 740 162 HOH HOH . F 5 HOH A 141 741 169 HOH HOH . F 5 HOH A 142 742 48 HOH HOH . F 5 HOH A 143 743 54 HOH HOH . F 5 HOH A 144 744 156 HOH HOH . F 5 HOH A 145 745 109 HOH HOH . F 5 HOH A 146 746 71 HOH HOH . F 5 HOH A 147 747 173 HOH HOH . F 5 HOH A 148 748 112 HOH HOH . F 5 HOH A 149 749 114 HOH HOH . F 5 HOH A 150 750 94 HOH HOH . F 5 HOH A 151 751 93 HOH HOH . F 5 HOH A 152 752 172 HOH HOH . F 5 HOH A 153 753 55 HOH HOH . F 5 HOH A 154 754 103 HOH HOH . F 5 HOH A 155 755 80 HOH HOH . F 5 HOH A 156 756 133 HOH HOH . F 5 HOH A 157 757 82 HOH HOH . F 5 HOH A 158 758 121 HOH HOH . F 5 HOH A 159 759 165 HOH HOH . F 5 HOH A 160 760 74 HOH HOH . F 5 HOH A 161 761 76 HOH HOH . F 5 HOH A 162 762 158 HOH HOH . F 5 HOH A 163 763 119 HOH HOH . F 5 HOH A 164 764 108 HOH HOH . F 5 HOH A 165 765 160 HOH HOH . F 5 HOH A 166 766 70 HOH HOH . F 5 HOH A 167 767 147 HOH HOH . F 5 HOH A 168 768 170 HOH HOH . F 5 HOH A 169 769 81 HOH HOH . F 5 HOH A 170 770 134 HOH HOH . F 5 HOH A 171 771 111 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 PGE . . . E 4 -39.182 -0.796 -3.591 1 51.79 ? C1 PGE 503 A 1 HETATM 2 O O1 PGE . . . E 4 -40.279 -1.195 -2.785 1 52.03 ? O1 PGE 503 A 1 HETATM 3 C C2 PGE . . . E 4 -37.965 -0.577 -2.763 1 51.52 ? C2 PGE 503 A 1 HETATM 4 O O2 PGE . . . E 4 -36.982 0.128 -3.501 1 51.39 ? O2 PGE 503 A 1 HETATM 5 C C3 PGE . . . E 4 -36.467 1.253 -2.794 1 51.32 ? C3 PGE 503 A 1 HETATM 6 C C4 PGE . . . E 4 -37.303 2.478 -3.039 1 51.12 ? C4 PGE 503 A 1 HETATM 7 O O4 PGE . . . E 4 -38.096 6.119 -1.198 1 50.35 ? O4 PGE 503 A 1 HETATM 8 C C6 PGE . . . E 4 -36.874 5.926 -1.892 1 50.22 ? C6 PGE 503 A 1 HETATM 9 C C5 PGE . . . E 4 -36.98 4.834 -2.905 1 50.49 ? C5 PGE 503 A 1 HETATM 10 O O3 PGE . . . E 4 -36.793 3.569 -2.286 1 51.03 ? O3 PGE 503 A 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 18 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 10 #