data_7ZVV # _model_server_result.job_id Xpty_klm0IAnS_eVtOsO3g _model_server_result.datetime_utc '2024-11-22 17:52:32' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7ZVV # _exptl.entry_id 7ZVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 188.228 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2R)-6-azanyl-2-carbamimidamido-hexanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZVV _cell.length_a 49.635 _cell.length_b 60.645 _cell.length_c 80.388 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C V7T . B V7T 201 1_555 D N ZAL . B ZAL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 C NZ V7T . B V7T 201 1_555 G C 3CF . B 3CF 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 D C ZAL . B ZAL 202 1_555 E N V8N . B V8N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 E C V8N . B V8N 203 1_555 F N 4CF . B 4CF 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 F C 4CF . B 4CF 204 1_555 G N 3CF . B 3CF 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C7 H16 N4 O2' _chem_comp.formula_weight 188.228 _chem_comp.id V7T _chem_comp.mon_nstd_flag n _chem_comp.name '(2R)-6-azanyl-2-carbamimidamido-hexanoic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N1 C2 V7T doub 406 n n N2 C2 V7T sing 407 n n CA CB V7T sing 408 n n CA N V7T sing 409 n n CA C V7T sing 410 n n CD CE V7T sing 411 n n CD CG V7T sing 412 n n CE NZ V7T sing 413 n n CG CB V7T sing 414 n n C2 N V7T sing 415 n n C O V7T doub 416 n n N1 H1 V7T sing 417 n n N2 H4 V7T sing 418 n n N2 H3 V7T sing 419 n n CA HA V7T sing 420 n n CD HD2 V7T sing 421 n n CD HD3 V7T sing 422 n n CE HE2 V7T sing 423 n n CE HE3 V7T sing 424 n n NZ HZ1 V7T sing 425 n n NZ HZ2 V7T sing 426 n n CG HG2 V7T sing 427 n n CG HG3 V7T sing 428 n n CB HB2 V7T sing 429 n n CB HB3 V7T sing 430 n n N H V7T sing 431 n n C OXT V7T sing 432 n n OXT HXT V7T sing 433 n n # _atom_sites.entry_id 7ZVV _atom_sites.fract_transf_matrix[1][1] 0.020147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V7T B 1 201 1 V7T XXX . D 4 ZAL B 1 202 1 ZAL XXX . E 5 V8N B 1 203 1 V8N XXX . F 6 4CF B 1 204 1 4CF XXX . G 7 3CF B 1 205 1 3CF XXX . H 8 HOH A 1 101 88 HOH HOH . H 8 HOH A 2 102 24 HOH HOH . H 8 HOH A 3 103 35 HOH HOH . H 8 HOH A 4 104 33 HOH HOH . H 8 HOH A 5 105 26 HOH HOH . H 8 HOH A 6 106 52 HOH HOH . H 8 HOH A 7 107 72 HOH HOH . H 8 HOH A 8 108 56 HOH HOH . H 8 HOH A 9 109 46 HOH HOH . H 8 HOH A 10 110 10 HOH HOH . H 8 HOH A 11 111 27 HOH HOH . H 8 HOH A 12 112 62 HOH HOH . H 8 HOH A 13 113 7 HOH HOH . H 8 HOH A 14 114 39 HOH HOH . H 8 HOH A 15 115 44 HOH HOH . H 8 HOH A 16 116 63 HOH HOH . H 8 HOH A 17 117 87 HOH HOH . H 8 HOH A 18 118 59 HOH HOH . H 8 HOH A 19 119 34 HOH HOH . H 8 HOH A 20 120 66 HOH HOH . H 8 HOH A 21 121 60 HOH HOH . H 8 HOH A 22 122 84 HOH HOH . H 8 HOH A 23 123 81 HOH HOH . I 8 HOH B 1 301 31 HOH HOH . I 8 HOH B 2 302 37 HOH HOH . I 8 HOH B 3 303 53 HOH HOH . I 8 HOH B 4 304 42 HOH HOH . I 8 HOH B 5 305 19 HOH HOH . I 8 HOH B 6 306 86 HOH HOH . I 8 HOH B 7 307 2 HOH HOH . I 8 HOH B 8 308 85 HOH HOH . I 8 HOH B 9 309 17 HOH HOH . I 8 HOH B 10 310 12 HOH HOH . I 8 HOH B 11 311 3 HOH HOH . I 8 HOH B 12 312 36 HOH HOH . I 8 HOH B 13 313 18 HOH HOH . I 8 HOH B 14 314 38 HOH HOH . I 8 HOH B 15 315 76 HOH HOH . I 8 HOH B 16 316 22 HOH HOH . I 8 HOH B 17 317 4 HOH HOH . I 8 HOH B 18 318 15 HOH HOH . I 8 HOH B 19 319 51 HOH HOH . I 8 HOH B 20 320 83 HOH HOH . I 8 HOH B 21 321 8 HOH HOH . I 8 HOH B 22 322 21 HOH HOH . I 8 HOH B 23 323 9 HOH HOH . I 8 HOH B 24 324 67 HOH HOH . I 8 HOH B 25 325 23 HOH HOH . I 8 HOH B 26 326 80 HOH HOH . I 8 HOH B 27 327 30 HOH HOH . I 8 HOH B 28 328 11 HOH HOH . I 8 HOH B 29 329 32 HOH HOH . I 8 HOH B 30 330 92 HOH HOH . I 8 HOH B 31 331 65 HOH HOH . I 8 HOH B 32 332 43 HOH HOH . I 8 HOH B 33 333 25 HOH HOH . I 8 HOH B 34 334 75 HOH HOH . I 8 HOH B 35 335 55 HOH HOH . I 8 HOH B 36 336 47 HOH HOH . I 8 HOH B 37 337 68 HOH HOH . I 8 HOH B 38 338 14 HOH HOH . I 8 HOH B 39 339 6 HOH HOH . I 8 HOH B 40 340 49 HOH HOH . I 8 HOH B 41 341 78 HOH HOH . I 8 HOH B 42 342 69 HOH HOH . I 8 HOH B 43 343 77 HOH HOH . I 8 HOH B 44 344 58 HOH HOH . I 8 HOH B 45 345 64 HOH HOH . I 8 HOH B 46 346 91 HOH HOH . I 8 HOH B 47 347 71 HOH HOH . I 8 HOH B 48 348 16 HOH HOH . I 8 HOH B 49 349 73 HOH HOH . I 8 HOH B 50 350 13 HOH HOH . I 8 HOH B 51 351 54 HOH HOH . I 8 HOH B 52 352 45 HOH HOH . I 8 HOH B 53 353 40 HOH HOH . I 8 HOH B 54 354 79 HOH HOH . I 8 HOH B 55 355 82 HOH HOH . I 8 HOH B 56 356 20 HOH HOH . I 8 HOH B 57 357 57 HOH HOH . I 8 HOH B 58 358 50 HOH HOH . I 8 HOH B 59 359 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 V7T . . . C 3 5.078 -10.245 2.49 1 33.13 ? N1 V7T 201 B 1 HETATM 2 N N2 V7T . . . C 3 6.291 -9.61 4.458 1 32.48 ? N2 V7T 201 B 1 HETATM 3 C CA V7T . . . C 3 3.86 -12.344 4.044 1 25.96 ? CA V7T 201 B 1 HETATM 4 C CD V7T . . . C 3 1.025 -14.348 5.911 1 27.23 ? CD V7T 201 B 1 HETATM 5 C CE V7T . . . C 3 -0.179 -15.154 5.477 1 26.2 ? CE V7T 201 B 1 HETATM 6 N NZ V7T . . . C 3 -1.056 -14.408 4.582 1 26.82 ? NZ V7T 201 B 1 HETATM 7 C CG V7T . . . C 3 1.916 -13.883 4.755 1 27.38 ? CG V7T 201 B 1 HETATM 8 C CB V7T . . . C 3 2.971 -12.864 5.18 1 26.12 ? CB V7T 201 B 1 HETATM 9 C C2 V7T . . . C 3 5.389 -10.394 3.764 1 34.22 ? C2 V7T 201 B 1 HETATM 10 N N V7T . . . C 3 4.8 -11.354 4.537 1 32.65 ? N V7T 201 B 1 HETATM 11 C C V7T . . . C 3 4.721 -13.473 3.485 1 27.47 ? C V7T 201 B 1 HETATM 12 O O V7T . . . C 3 4.287 -14.204 2.61 1 29.27 ? O V7T 201 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 312 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 12 #