data_7ZVV # _model_server_result.job_id P1i0RlpcgvDtaxFkqh88xg _model_server_result.datetime_utc '2025-02-16 22:43:54' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zvv # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 7ZVV # _exptl.entry_id 7ZVV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 165.189 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '2-[3-(aminomethyl)phenyl]ethanoic acid' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZVV _cell.length_a 49.635 _cell.length_b 60.645 _cell.length_c 80.388 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZVV _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 C C V7T . B V7T 201 1_555 D N ZAL . B ZAL 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.34 ? covale ? covale2 C NZ V7T . B V7T 201 1_555 G C 3CF . B 3CF 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.335 ? covale ? covale3 D C ZAL . B ZAL 202 1_555 E N V8N . B V8N 203 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? covale ? covale4 E C V8N . B V8N 203 1_555 F N 4CF . B 4CF 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.334 ? covale ? covale5 F C 4CF . B 4CF 204 1_555 G N 3CF . B 3CF 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.339 ? # _chem_comp.formula 'C9 H11 N O2' _chem_comp.formula_weight 165.189 _chem_comp.id V8N _chem_comp.mon_nstd_flag . _chem_comp.name '2-[3-(aminomethyl)phenyl]ethanoic acid' _chem_comp.type peptide-like _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O C V8N doub 434 n n C C20 V8N sing 435 n n C20 C21 V8N sing 436 n n C21 C22 V8N doub 437 n y C21 C33 V8N sing 438 n y C22 C23 V8N sing 439 n y C23 C24 V8N sing 440 n n C23 C31 V8N doub 441 n y C24 N V8N sing 442 n n C31 C32 V8N sing 443 n y C32 C33 V8N doub 444 n y C20 H1 V8N sing 445 n n C20 H3 V8N sing 446 n n C22 H4 V8N sing 447 n n C24 H5 V8N sing 448 n n C24 H6 V8N sing 449 n n C31 H7 V8N sing 450 n n C32 H8 V8N sing 451 n n C33 H9 V8N sing 452 n n N H V8N sing 453 n n N H2 V8N sing 454 n n C OXT V8N sing 455 n n OXT HXT V8N sing 456 n n # _atom_sites.entry_id 7ZVV _atom_sites.fract_transf_matrix[1][1] 0.020147 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016489 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01244 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 V7T B 1 201 1 V7T XXX . D 4 ZAL B 1 202 1 ZAL XXX . E 5 V8N B 1 203 1 V8N XXX . F 6 4CF B 1 204 1 4CF XXX . G 7 3CF B 1 205 1 3CF XXX . H 8 HOH A 1 101 88 HOH HOH . H 8 HOH A 2 102 24 HOH HOH . H 8 HOH A 3 103 35 HOH HOH . H 8 HOH A 4 104 33 HOH HOH . H 8 HOH A 5 105 26 HOH HOH . H 8 HOH A 6 106 52 HOH HOH . H 8 HOH A 7 107 72 HOH HOH . H 8 HOH A 8 108 56 HOH HOH . H 8 HOH A 9 109 46 HOH HOH . H 8 HOH A 10 110 10 HOH HOH . H 8 HOH A 11 111 27 HOH HOH . H 8 HOH A 12 112 62 HOH HOH . H 8 HOH A 13 113 7 HOH HOH . H 8 HOH A 14 114 39 HOH HOH . H 8 HOH A 15 115 44 HOH HOH . H 8 HOH A 16 116 63 HOH HOH . H 8 HOH A 17 117 87 HOH HOH . H 8 HOH A 18 118 59 HOH HOH . H 8 HOH A 19 119 34 HOH HOH . H 8 HOH A 20 120 66 HOH HOH . H 8 HOH A 21 121 60 HOH HOH . H 8 HOH A 22 122 84 HOH HOH . H 8 HOH A 23 123 81 HOH HOH . I 8 HOH B 1 301 31 HOH HOH . I 8 HOH B 2 302 37 HOH HOH . I 8 HOH B 3 303 53 HOH HOH . I 8 HOH B 4 304 42 HOH HOH . I 8 HOH B 5 305 19 HOH HOH . I 8 HOH B 6 306 86 HOH HOH . I 8 HOH B 7 307 2 HOH HOH . I 8 HOH B 8 308 85 HOH HOH . I 8 HOH B 9 309 17 HOH HOH . I 8 HOH B 10 310 12 HOH HOH . I 8 HOH B 11 311 3 HOH HOH . I 8 HOH B 12 312 36 HOH HOH . I 8 HOH B 13 313 18 HOH HOH . I 8 HOH B 14 314 38 HOH HOH . I 8 HOH B 15 315 76 HOH HOH . I 8 HOH B 16 316 22 HOH HOH . I 8 HOH B 17 317 4 HOH HOH . I 8 HOH B 18 318 15 HOH HOH . I 8 HOH B 19 319 51 HOH HOH . I 8 HOH B 20 320 83 HOH HOH . I 8 HOH B 21 321 8 HOH HOH . I 8 HOH B 22 322 21 HOH HOH . I 8 HOH B 23 323 9 HOH HOH . I 8 HOH B 24 324 67 HOH HOH . I 8 HOH B 25 325 23 HOH HOH . I 8 HOH B 26 326 80 HOH HOH . I 8 HOH B 27 327 30 HOH HOH . I 8 HOH B 28 328 11 HOH HOH . I 8 HOH B 29 329 32 HOH HOH . I 8 HOH B 30 330 92 HOH HOH . I 8 HOH B 31 331 65 HOH HOH . I 8 HOH B 32 332 43 HOH HOH . I 8 HOH B 33 333 25 HOH HOH . I 8 HOH B 34 334 75 HOH HOH . I 8 HOH B 35 335 55 HOH HOH . I 8 HOH B 36 336 47 HOH HOH . I 8 HOH B 37 337 68 HOH HOH . I 8 HOH B 38 338 14 HOH HOH . I 8 HOH B 39 339 6 HOH HOH . I 8 HOH B 40 340 49 HOH HOH . I 8 HOH B 41 341 78 HOH HOH . I 8 HOH B 42 342 69 HOH HOH . I 8 HOH B 43 343 77 HOH HOH . I 8 HOH B 44 344 58 HOH HOH . I 8 HOH B 45 345 64 HOH HOH . I 8 HOH B 46 346 91 HOH HOH . I 8 HOH B 47 347 71 HOH HOH . I 8 HOH B 48 348 16 HOH HOH . I 8 HOH B 49 349 73 HOH HOH . I 8 HOH B 50 350 13 HOH HOH . I 8 HOH B 51 351 54 HOH HOH . I 8 HOH B 52 352 45 HOH HOH . I 8 HOH B 53 353 40 HOH HOH . I 8 HOH B 54 354 79 HOH HOH . I 8 HOH B 55 355 82 HOH HOH . I 8 HOH B 56 356 20 HOH HOH . I 8 HOH B 57 357 57 HOH HOH . I 8 HOH B 58 358 50 HOH HOH . I 8 HOH B 59 359 70 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O V8N . . . E 5 2.392 -10.688 1.465 1 31.74 ? O V8N 203 B 1 HETATM 2 C C V8N . . . E 5 1.768 -10.989 0.45 1 29.57 ? C V8N 203 B 1 HETATM 3 C C20 V8N . . . E 5 2.461 -11.482 -0.805 1 33.98 ? C20 V8N 203 B 1 HETATM 4 C C21 V8N . . . E 5 3.954 -11.226 -0.805 1 38.64 ? C21 V8N 203 B 1 HETATM 5 C C22 V8N . . . E 5 4.839 -12.226 -0.418 1 35.52 ? C22 V8N 203 B 1 HETATM 6 C C23 V8N . . . E 5 6.216 -12.022 -0.412 1 38.04 ? C23 V8N 203 B 1 HETATM 7 C C24 V8N . . . E 5 7.154 -13.139 -0.016 1 39.91 ? C24 V8N 203 B 1 HETATM 8 C C31 V8N . . . E 5 6.704 -10.784 -0.804 1 39.95 ? C31 V8N 203 B 1 HETATM 9 C C32 V8N . . . E 5 5.837 -9.778 -1.195 1 41.63 ? C32 V8N 203 B 1 HETATM 10 C C33 V8N . . . E 5 4.468 -9.998 -1.196 1 38.72 ? C33 V8N 203 B 1 HETATM 11 N N V8N . . . E 5 7.257 -13.343 1.423 1 38.7 ? N V8N 203 B 1 # _model_server_stats.io_time_ms 66 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 273 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #