data_7ZVZ # _model_server_result.job_id 1WR9dHJd-96mfgv1S4LMrQ _model_server_result.datetime_utc '2024-11-09 01:52:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zvz # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":202}' # _entry.id 7ZVZ # _exptl.entry_id 7ZVZ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZVZ _cell.length_a 105.56 _cell.length_b 105.56 _cell.length_c 105.56 _cell.Z_PDB 24 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZVZ _symmetry.cell_setting ? _symmetry.Int_Tables_number 198 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 3' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 G N N ? 4 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A SG CYS 139 A CYS 119 1_555 C CAB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.687 ? covale ? covale2 A SG CYS 139 A CYS 119 1_555 C CBB HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.859 ? covale ? covale3 A SG CYS 142 A CYS 122 1_555 C CAC HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? covale ? covale4 B SG CYS 139 B CYS 119 1_555 F CAB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.709 ? covale ? covale5 B SG CYS 139 B CYS 119 1_555 F CBB HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.847 ? covale ? covale6 B SG CYS 142 B CYS 122 1_555 F CAC HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.801 ? metalc ? metalc1 A NE2 HIS 91 A HIS 71 1_555 D ZN ZN . A ZN 202 1_555 ? ? ? ? A ? ? ? ? ? ? ? 2.042 ? metalc ? metalc2 A NE2 HIS 91 A HIS 71 1_555 D ZN ZN . A ZN 202 8_555 ? ? ? ? A ? ? ? ? ? ? ? 2.042 ? metalc ? metalc3 A NE2 HIS 143 A HIS 123 1_555 C FE HEC . A HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc4 D ZN ZN . A ZN 202 1_555 I O HOH . A HOH 340 1_555 ? A ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc5 D ZN ZN . A ZN 202 1_555 I O HOH . A HOH 340 8_555 ? A ? ? ? ? ? ? ? ? ? ? 2.314 ? metalc ? metalc6 B NE2 HIS 143 B HIS 123 1_555 F FE HEC . B HEC 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.13 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 7ZVZ _atom_sites.fract_transf_matrix[1][1] 0.009473 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.009473 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009473 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEC A 1 201 139 HEC HEC . D 3 ZN A 1 202 1 ZN ZN . E 4 GOL A 1 203 1 GOL GOL . F 2 HEC B 1 201 139 HEC HEC . G 4 GOL B 1 202 3 GOL GOL . H 4 GOL B 1 203 5 GOL GOL . I 5 HOH A 1 301 173 HOH HOH . I 5 HOH A 2 302 152 HOH HOH . I 5 HOH A 3 303 111 HOH HOH . I 5 HOH A 4 304 138 HOH HOH . I 5 HOH A 5 305 106 HOH HOH . I 5 HOH A 6 306 150 HOH HOH . I 5 HOH A 7 307 53 HOH HOH . I 5 HOH A 8 308 62 HOH HOH . I 5 HOH A 9 309 69 HOH HOH . I 5 HOH A 10 310 23 HOH HOH . I 5 HOH A 11 311 16 HOH HOH . I 5 HOH A 12 312 99 HOH HOH . I 5 HOH A 13 313 117 HOH HOH . I 5 HOH A 14 314 52 HOH HOH . I 5 HOH A 15 315 13 HOH HOH . I 5 HOH A 16 316 120 HOH HOH . I 5 HOH A 17 317 57 HOH HOH . I 5 HOH A 18 318 15 HOH HOH . I 5 HOH A 19 319 108 HOH HOH . I 5 HOH A 20 320 4 HOH HOH . I 5 HOH A 21 321 26 HOH HOH . I 5 HOH A 22 322 49 HOH HOH . I 5 HOH A 23 323 48 HOH HOH . I 5 HOH A 24 324 221 HOH HOH . I 5 HOH A 25 325 56 HOH HOH . I 5 HOH A 26 326 70 HOH HOH . I 5 HOH A 27 327 61 HOH HOH . I 5 HOH A 28 328 30 HOH HOH . I 5 HOH A 29 329 7 HOH HOH . I 5 HOH A 30 330 5 HOH HOH . I 5 HOH A 31 331 41 HOH HOH . I 5 HOH A 32 332 67 HOH HOH . I 5 HOH A 33 333 127 HOH HOH . I 5 HOH A 34 334 151 HOH HOH . I 5 HOH A 35 335 58 HOH HOH . I 5 HOH A 36 336 37 HOH HOH . I 5 HOH A 37 337 100 HOH HOH . I 5 HOH A 38 338 29 HOH HOH . I 5 HOH A 39 339 83 HOH HOH . I 5 HOH A 40 340 80 HOH HOH . I 5 HOH A 41 341 24 HOH HOH . I 5 HOH A 42 342 17 HOH HOH . I 5 HOH A 43 343 64 HOH HOH . I 5 HOH A 44 344 55 HOH HOH . I 5 HOH A 45 345 90 HOH HOH . I 5 HOH A 46 346 14 HOH HOH . I 5 HOH A 47 347 180 HOH HOH . I 5 HOH A 48 348 157 HOH HOH . I 5 HOH A 49 349 95 HOH HOH . I 5 HOH A 50 350 96 HOH HOH . I 5 HOH A 51 351 32 HOH HOH . I 5 HOH A 52 352 39 HOH HOH . I 5 HOH A 53 353 46 HOH HOH . I 5 HOH A 54 354 102 HOH HOH . I 5 HOH A 55 355 116 HOH HOH . I 5 HOH A 56 356 18 HOH HOH . I 5 HOH A 57 357 65 HOH HOH . I 5 HOH A 58 358 163 HOH HOH . I 5 HOH A 59 359 124 HOH HOH . I 5 HOH A 60 360 130 HOH HOH . I 5 HOH A 61 361 175 HOH HOH . I 5 HOH A 62 362 74 HOH HOH . J 5 HOH B 1 301 119 HOH HOH . J 5 HOH B 2 302 195 HOH HOH . J 5 HOH B 3 303 36 HOH HOH . J 5 HOH B 4 304 28 HOH HOH . J 5 HOH B 5 305 8 HOH HOH . J 5 HOH B 6 306 89 HOH HOH . J 5 HOH B 7 307 92 HOH HOH . J 5 HOH B 8 308 38 HOH HOH . J 5 HOH B 9 309 164 HOH HOH . J 5 HOH B 10 310 6 HOH HOH . J 5 HOH B 11 311 27 HOH HOH . J 5 HOH B 12 312 85 HOH HOH . J 5 HOH B 13 313 63 HOH HOH . J 5 HOH B 14 314 34 HOH HOH . J 5 HOH B 15 315 66 HOH HOH . J 5 HOH B 16 316 35 HOH HOH . J 5 HOH B 17 317 10 HOH HOH . J 5 HOH B 18 318 98 HOH HOH . J 5 HOH B 19 319 105 HOH HOH . J 5 HOH B 20 320 50 HOH HOH . J 5 HOH B 21 321 113 HOH HOH . J 5 HOH B 22 322 222 HOH HOH . J 5 HOH B 23 323 59 HOH HOH . J 5 HOH B 24 324 21 HOH HOH . J 5 HOH B 25 325 60 HOH HOH . J 5 HOH B 26 326 31 HOH HOH . J 5 HOH B 27 327 9 HOH HOH . J 5 HOH B 28 328 42 HOH HOH . J 5 HOH B 29 329 19 HOH HOH . J 5 HOH B 30 330 44 HOH HOH . J 5 HOH B 31 331 2 HOH HOH . J 5 HOH B 32 332 20 HOH HOH . J 5 HOH B 33 333 71 HOH HOH . J 5 HOH B 34 334 149 HOH HOH . J 5 HOH B 35 335 143 HOH HOH . J 5 HOH B 36 336 47 HOH HOH . J 5 HOH B 37 337 11 HOH HOH . J 5 HOH B 38 338 128 HOH HOH . J 5 HOH B 39 339 122 HOH HOH . J 5 HOH B 40 340 40 HOH HOH . J 5 HOH B 41 341 88 HOH HOH . J 5 HOH B 42 342 144 HOH HOH . J 5 HOH B 43 343 86 HOH HOH . J 5 HOH B 44 344 77 HOH HOH . J 5 HOH B 45 345 97 HOH HOH . J 5 HOH B 46 346 3 HOH HOH . J 5 HOH B 47 347 140 HOH HOH . J 5 HOH B 48 348 87 HOH HOH . J 5 HOH B 49 349 93 HOH HOH . J 5 HOH B 50 350 51 HOH HOH . J 5 HOH B 51 351 139 HOH HOH . J 5 HOH B 52 352 54 HOH HOH . J 5 HOH B 53 353 84 HOH HOH . J 5 HOH B 54 354 134 HOH HOH . J 5 HOH B 55 355 188 HOH HOH . J 5 HOH B 56 356 43 HOH HOH . J 5 HOH B 57 357 79 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 -10.377 7.179 -2.643 1 61.83 ? C1 GOL 202 B 1 HETATM 2 O O1 GOL . . . G 4 -11.497 6.377 -2.282 1 55.52 ? O1 GOL 202 B 1 HETATM 3 C C2 GOL . . . G 4 -10.597 8.622 -2.239 1 63.03 ? C2 GOL 202 B 1 HETATM 4 O O2 GOL . . . G 4 -11.736 9.128 -2.939 1 48.78 ? O2 GOL 202 B 1 HETATM 5 C C3 GOL . . . G 4 -10.77 8.8 -0.74 1 64.95 ? C3 GOL 202 B 1 HETATM 6 O O3 GOL . . . G 4 -9.523 8.822 -0.046 1 72.91 ? O3 GOL 202 B 1 # _model_server_stats.io_time_ms 19 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 321 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 6 #