data_7ZW8 # _model_server_result.job_id 0_mVnGTKOSqMuGPEszlpQg _model_server_result.datetime_utc '2025-04-20 09:36:16' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zw8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1001}' # _entry.id 7ZW8 # _exptl.entry_id 7ZW8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 508.617 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description ~{N}-[[4-(1-methylpyrazol-4-yl)phenyl]methyl]-6-[7-(3-pyrrolidin-1-ylpropoxy)imidazo[1,2-a]pyridin-3-yl]pyrimidin-4-amine _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZW8 _cell.length_a 46.056 _cell.length_b 81.307 _cell.length_c 96.049 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZW8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C29 H32 N8 O' _chem_comp.formula_weight 508.617 _chem_comp.id K3R _chem_comp.mon_nstd_flag . _chem_comp.name ~{N}-[[4-(1-methylpyrazol-4-yl)phenyl]methyl]-6-[7-(3-pyrrolidin-1-ylpropoxy)imidazo[1,2-a]pyridin-3-yl]pyrimidin-4-amine _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '[4-(1-Methyl-1H-pyrazol-4-yl)-benzyl]-{6-[7-(3-pyrrolidin-1-yl-propoxy)-imidazo[1,2-a]pyridin-3-yl]-pyrimidin-4-yl}-amine' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N6 N2 K3R sing 173 n y N6 C5 K3R doub 174 n y C1 N2 K3R sing 175 n n N2 C3 K3R sing 176 n y C5 C4 K3R sing 177 n y C3 C4 K3R doub 178 n y C4 C7 K3R sing 179 n n C7 C38 K3R doub 180 n y C7 C8 K3R sing 181 n y C38 C37 K3R sing 182 n y C8 C9 K3R doub 183 n y C37 C10 K3R doub 184 n y C9 C10 K3R sing 185 n y C10 C11 K3R sing 186 n n C31 C30 K3R sing 187 n n C31 C32 K3R sing 188 n n C27 C26 K3R sing 189 n n C27 C28 K3R sing 190 n n C30 N29 K3R sing 191 n n N29 C33 K3R sing 192 n n N29 C28 K3R sing 193 n n N21 C20 K3R sing 194 n y N21 C22 K3R doub 195 n y C20 C19 K3R doub 196 n y C22 C23 K3R sing 197 n y C22 N36 K3R sing 198 n y C23 C24 K3R doub 199 n y C19 N36 K3R sing 200 n y C19 C15 K3R sing 201 n n N36 C35 K3R sing 202 n y C26 O25 K3R sing 203 n n C24 O25 K3R sing 204 n n C24 C34 K3R sing 205 n y C33 C32 K3R sing 206 n n N16 C15 K3R doub 207 n y N16 C17 K3R sing 208 n y C15 C14 K3R sing 209 n y C35 C34 K3R doub 210 n y C17 N18 K3R doub 211 n y C14 C13 K3R doub 212 n y N18 C13 K3R sing 213 n y C13 N12 K3R sing 214 n n N12 C11 K3R sing 215 n n C1 H1 K3R sing 216 n n C1 H2 K3R sing 217 n n C1 H3 K3R sing 218 n n C3 H4 K3R sing 219 n n C5 H5 K3R sing 220 n n C8 H6 K3R sing 221 n n C11 H7 K3R sing 222 n n C11 H8 K3R sing 223 n n C17 H9 K3R sing 224 n n C23 H10 K3R sing 225 n n C27 H11 K3R sing 226 n n C27 H12 K3R sing 227 n n C30 H13 K3R sing 228 n n C30 H14 K3R sing 229 n n C31 H15 K3R sing 230 n n C31 H16 K3R sing 231 n n C32 H17 K3R sing 232 n n C32 H18 K3R sing 233 n n C33 H19 K3R sing 234 n n C33 H20 K3R sing 235 n n C34 H21 K3R sing 236 n n C35 H22 K3R sing 237 n n C37 H23 K3R sing 238 n n C38 H24 K3R sing 239 n n C9 H25 K3R sing 240 n n N12 H26 K3R sing 241 n n C14 H27 K3R sing 242 n n C20 H28 K3R sing 243 n n C26 H29 K3R sing 244 n n C26 H30 K3R sing 245 n n C28 H31 K3R sing 246 n n C28 H32 K3R sing 247 n n # _atom_sites.entry_id 7ZW8 _atom_sites.fract_transf_matrix[1][1] 0.021713 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012299 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010411 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K3R A 1 1001 1 K3R INX . C 3 HOH A 1 1101 6 HOH HOH . C 3 HOH A 2 1102 3 HOH HOH . C 3 HOH A 3 1103 16 HOH HOH . C 3 HOH A 4 1104 39 HOH HOH . C 3 HOH A 5 1105 43 HOH HOH . C 3 HOH A 6 1106 35 HOH HOH . C 3 HOH A 7 1107 41 HOH HOH . C 3 HOH A 8 1108 40 HOH HOH . C 3 HOH A 9 1109 53 HOH HOH . C 3 HOH A 10 1110 11 HOH HOH . C 3 HOH A 11 1111 7 HOH HOH . C 3 HOH A 12 1112 51 HOH HOH . C 3 HOH A 13 1113 5 HOH HOH . C 3 HOH A 14 1114 29 HOH HOH . C 3 HOH A 15 1115 8 HOH HOH . C 3 HOH A 16 1116 10 HOH HOH . C 3 HOH A 17 1117 20 HOH HOH . C 3 HOH A 18 1118 52 HOH HOH . C 3 HOH A 19 1119 17 HOH HOH . C 3 HOH A 20 1120 49 HOH HOH . C 3 HOH A 21 1121 27 HOH HOH . C 3 HOH A 22 1122 45 HOH HOH . C 3 HOH A 23 1123 46 HOH HOH . C 3 HOH A 24 1124 60 HOH HOH . C 3 HOH A 25 1125 62 HOH HOH . C 3 HOH A 26 1126 54 HOH HOH . C 3 HOH A 27 1127 42 HOH HOH . C 3 HOH A 28 1128 36 HOH HOH . C 3 HOH A 29 1129 23 HOH HOH . C 3 HOH A 30 1130 28 HOH HOH . C 3 HOH A 31 1131 15 HOH HOH . C 3 HOH A 32 1132 48 HOH HOH . C 3 HOH A 33 1133 65 HOH HOH . C 3 HOH A 34 1134 32 HOH HOH . C 3 HOH A 35 1135 61 HOH HOH . C 3 HOH A 36 1136 24 HOH HOH . C 3 HOH A 37 1137 50 HOH HOH . C 3 HOH A 38 1138 63 HOH HOH . C 3 HOH A 39 1139 4 HOH HOH . C 3 HOH A 40 1140 37 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 K3R . . . B 2 16.931 13.627 -20.652 1 48.42 ? C1 K3R 1001 A 1 HETATM 2 C C3 K3R . . . B 2 15.615 12.517 -18.839 1 48.95 ? C3 K3R 1001 A 1 HETATM 3 C C4 K3R . . . B 2 14.385 11.928 -18.69 1 48.75 ? C4 K3R 1001 A 1 HETATM 4 C C5 K3R . . . B 2 13.774 11.987 -19.969 1 49.02 ? C5 K3R 1001 A 1 HETATM 5 C C7 K3R . . . B 2 13.814 11.4 -17.403 1 48.26 ? C7 K3R 1001 A 1 HETATM 6 C C8 K3R . . . B 2 14.675 11.026 -16.361 1 47.43 ? C8 K3R 1001 A 1 HETATM 7 C C11 K3R . . . B 2 12.257 10.004 -13.641 1 49.69 ? C11 K3R 1001 A 1 HETATM 8 C C15 K3R . . . B 2 10.019 5.652 -14.174 1 54.59 ? C15 K3R 1001 A 1 HETATM 9 C C17 K3R . . . B 2 12.334 5.816 -14.079 1 53.37 ? C17 K3R 1001 A 1 HETATM 10 C C19 K3R . . . B 2 8.812 4.817 -14.319 1 56.3 ? C19 K3R 1001 A 1 HETATM 11 C C23 K3R . . . B 2 6.997 1.785 -14.368 1 58.85 ? C23 K3R 1001 A 1 HETATM 12 C C24 K3R . . . B 2 7.936 0.766 -14.249 1 60.12 ? C24 K3R 1001 A 1 HETATM 13 O O25 K3R . . . B 2 7.563 -0.554 -14.206 1 62.97 ? O25 K3R 1001 A 1 HETATM 14 C C27 K3R . . . B 2 6.035 -2.343 -14.861 1 68.57 ? C27 K3R 1001 A 1 HETATM 15 C C30 K3R . . . B 2 5.241 -5.291 -14.827 1 74.75 ? C30 K3R 1001 A 1 HETATM 16 C C31 K3R . . . B 2 5.475 -6.828 -14.907 1 75.1 ? C31 K3R 1001 A 1 HETATM 17 C C32 K3R . . . B 2 6.713 -7.015 -13.979 1 75.2 ? C32 K3R 1001 A 1 HETATM 18 C C33 K3R . . . B 2 7.531 -5.716 -14.2 1 74.83 ? C33 K3R 1001 A 1 HETATM 19 C C34 K3R . . . B 2 9.302 1.111 -14.148 1 58.65 ? C34 K3R 1001 A 1 HETATM 20 C C35 K3R . . . B 2 9.668 2.42 -14.156 1 58.06 ? C35 K3R 1001 A 1 HETATM 21 C C37 K3R . . . B 2 11.897 10.82 -16.021 1 48.24 ? C37 K3R 1001 A 1 HETATM 22 C C38 K3R . . . B 2 12.414 11.317 -17.218 1 48.23 ? C38 K3R 1001 A 1 HETATM 23 N N2 K3R . . . B 2 15.761 12.939 -20.118 1 48.72 ? N2 K3R 1001 A 1 HETATM 24 N N6 K3R . . . B 2 14.598 12.587 -20.818 1 48.96 ? N6 K3R 1001 A 1 HETATM 25 C C9 K3R . . . B 2 14.152 10.56 -15.17 1 47.47 ? C9 K3R 1001 A 1 HETATM 26 C C10 K3R . . . B 2 12.773 10.454 -14.995 1 48.38 ? C10 K3R 1001 A 1 HETATM 27 N N12 K3R . . . B 2 11.037 9.172 -13.694 1 51.46 ? N12 K3R 1001 A 1 HETATM 28 C C13 K3R . . . B 2 11.088 7.78 -13.844 1 51.91 ? C13 K3R 1001 A 1 HETATM 29 C C14 K3R . . . B 2 9.905 7.049 -13.979 1 52.87 ? C14 K3R 1001 A 1 HETATM 30 N N16 K3R . . . B 2 11.242 5.071 -14.183 1 54.12 ? N16 K3R 1001 A 1 HETATM 31 N N18 K3R . . . B 2 12.266 7.14 -13.905 1 52.14 ? N18 K3R 1001 A 1 HETATM 32 C C20 K3R . . . B 2 7.52 5.299 -14.453 1 56.63 ? C20 K3R 1001 A 1 HETATM 33 N N21 K3R . . . B 2 6.693 4.257 -14.483 1 57.04 ? N21 K3R 1001 A 1 HETATM 34 C C22 K3R . . . B 2 7.396 3.126 -14.374 1 57.64 ? C22 K3R 1001 A 1 HETATM 35 C C26 K3R . . . B 2 6.183 -0.951 -14.251 1 65.7 ? C26 K3R 1001 A 1 HETATM 36 C C28 K3R . . . B 2 6.654 -3.434 -13.991 1 71.35 ? C28 K3R 1001 A 1 HETATM 37 N N29 K3R . . . B 2 6.607 -4.702 -14.759 1 73.98 ? N29 K3R 1001 A 1 HETATM 38 N N36 K3R . . . B 2 8.734 3.424 -14.264 1 57.31 ? N36 K3R 1001 A 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 438 _model_server_stats.encode_time_ms 8 _model_server_stats.element_count 38 #