data_7ZWW # _model_server_result.job_id GZRY6bYQfglkqnZxpOLEFQ _model_server_result.datetime_utc '2025-01-10 07:43:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zww # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 7ZWW # _exptl.entry_id 7ZWW _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 340.38 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,3-dimethyl-5-[(6-morpholin-4-ylpyrimidin-4-yl)amino]benzimidazol-2-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZWW _cell.length_a 67.6 _cell.length_b 67.6 _cell.length_c 166.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZWW _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_565 x,x-y+1,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 -33.8 58.543317 27.783333 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H20 N6 O2' _chem_comp.formula_weight 340.38 _chem_comp.id K69 _chem_comp.mon_nstd_flag . _chem_comp.name 1,3-dimethyl-5-[(6-morpholin-4-ylpyrimidin-4-yl)amino]benzimidazol-2-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C11 C10 K69 sing 182 n n C11 O1 K69 sing 183 n n C10 N5 K69 sing 184 n n O1 C12 K69 sing 185 n n N3 C8 K69 doub 186 n y N3 C9 K69 sing 187 n y N5 C13 K69 sing 188 n n N5 C8 K69 sing 189 n n C12 C13 K69 sing 190 n n C8 C7 K69 sing 191 n y C9 N4 K69 doub 192 n y N4 C6 K69 sing 193 n y C7 C6 K69 doub 194 n y C6 N2 K69 sing 195 n n N2 C5 K69 sing 196 n n C5 C14 K69 doub 197 n y C5 C4 K69 sing 198 n y C14 C15 K69 sing 199 n y C4 C3 K69 doub 200 n y C15 C16 K69 doub 201 n y C3 C16 K69 sing 202 n y C3 N1 K69 sing 203 n n C16 N K69 sing 204 n n N1 C2 K69 sing 205 n n N1 C1 K69 sing 206 n n N C K69 sing 207 n n N C1 K69 sing 208 n n C1 O K69 doub 209 n n C14 H1 K69 sing 210 n n C12 H2 K69 sing 211 n n C12 H3 K69 sing 212 n n C9 H4 K69 sing 213 n n C15 H5 K69 sing 214 n n N2 H6 K69 sing 215 n n C13 H7 K69 sing 216 n n C13 H8 K69 sing 217 n n C11 H9 K69 sing 218 n n C11 H10 K69 sing 219 n n C10 H11 K69 sing 220 n n C10 H12 K69 sing 221 n n C7 H13 K69 sing 222 n n C2 H14 K69 sing 223 n n C2 H15 K69 sing 224 n n C2 H16 K69 sing 225 n n C4 H17 K69 sing 226 n n C H18 K69 sing 227 n n C H19 K69 sing 228 n n C H20 K69 sing 229 n n # _atom_sites.entry_id 7ZWW _atom_sites.fract_transf_matrix[1][1] 0.014793 _atom_sites.fract_transf_matrix[1][2] 0.008541 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017081 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005999 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 K69 A 1 201 200 K69 274 . C 3 EDO A 1 202 1 EDO EDO . D 3 EDO A 1 203 2 EDO EDO . E 4 HOH A 1 301 115 HOH HOH . E 4 HOH A 2 302 127 HOH HOH . E 4 HOH A 3 303 117 HOH HOH . E 4 HOH A 4 304 6 HOH HOH . E 4 HOH A 5 305 38 HOH HOH . E 4 HOH A 6 306 132 HOH HOH . E 4 HOH A 7 307 4 HOH HOH . E 4 HOH A 8 308 105 HOH HOH . E 4 HOH A 9 309 66 HOH HOH . E 4 HOH A 10 310 18 HOH HOH . E 4 HOH A 11 311 153 HOH HOH . E 4 HOH A 12 312 146 HOH HOH . E 4 HOH A 13 313 129 HOH HOH . E 4 HOH A 14 314 69 HOH HOH . E 4 HOH A 15 315 9 HOH HOH . E 4 HOH A 16 316 13 HOH HOH . E 4 HOH A 17 317 123 HOH HOH . E 4 HOH A 18 318 25 HOH HOH . E 4 HOH A 19 319 8 HOH HOH . E 4 HOH A 20 320 15 HOH HOH . E 4 HOH A 21 321 126 HOH HOH . E 4 HOH A 22 322 106 HOH HOH . E 4 HOH A 23 323 56 HOH HOH . E 4 HOH A 24 324 41 HOH HOH . E 4 HOH A 25 325 30 HOH HOH . E 4 HOH A 26 326 113 HOH HOH . E 4 HOH A 27 327 130 HOH HOH . E 4 HOH A 28 328 96 HOH HOH . E 4 HOH A 29 329 88 HOH HOH . E 4 HOH A 30 330 141 HOH HOH . E 4 HOH A 31 331 92 HOH HOH . E 4 HOH A 32 332 48 HOH HOH . E 4 HOH A 33 333 118 HOH HOH . E 4 HOH A 34 334 51 HOH HOH . E 4 HOH A 35 335 14 HOH HOH . E 4 HOH A 36 336 5 HOH HOH . E 4 HOH A 37 337 10 HOH HOH . E 4 HOH A 38 338 1 HOH HOH . E 4 HOH A 39 339 138 HOH HOH . E 4 HOH A 40 340 2 HOH HOH . E 4 HOH A 41 341 78 HOH HOH . E 4 HOH A 42 342 26 HOH HOH . E 4 HOH A 43 343 7 HOH HOH . E 4 HOH A 44 344 144 HOH HOH . E 4 HOH A 45 345 125 HOH HOH . E 4 HOH A 46 346 32 HOH HOH . E 4 HOH A 47 347 12 HOH HOH . E 4 HOH A 48 348 65 HOH HOH . E 4 HOH A 49 349 43 HOH HOH . E 4 HOH A 50 350 21 HOH HOH . E 4 HOH A 51 351 17 HOH HOH . E 4 HOH A 52 352 24 HOH HOH . E 4 HOH A 53 353 39 HOH HOH . E 4 HOH A 54 354 84 HOH HOH . E 4 HOH A 55 355 120 HOH HOH . E 4 HOH A 56 356 3 HOH HOH . E 4 HOH A 57 357 114 HOH HOH . E 4 HOH A 58 358 149 HOH HOH . E 4 HOH A 59 359 82 HOH HOH . E 4 HOH A 60 360 147 HOH HOH . E 4 HOH A 61 361 119 HOH HOH . E 4 HOH A 62 362 145 HOH HOH . E 4 HOH A 63 363 28 HOH HOH . E 4 HOH A 64 364 122 HOH HOH . E 4 HOH A 65 365 54 HOH HOH . E 4 HOH A 66 366 37 HOH HOH . E 4 HOH A 67 367 79 HOH HOH . E 4 HOH A 68 368 31 HOH HOH . E 4 HOH A 69 369 33 HOH HOH . E 4 HOH A 70 370 53 HOH HOH . E 4 HOH A 71 371 35 HOH HOH . E 4 HOH A 72 372 22 HOH HOH . E 4 HOH A 73 373 57 HOH HOH . E 4 HOH A 74 374 20 HOH HOH . E 4 HOH A 75 375 27 HOH HOH . E 4 HOH A 76 376 64 HOH HOH . E 4 HOH A 77 377 23 HOH HOH . E 4 HOH A 78 378 36 HOH HOH . E 4 HOH A 79 379 95 HOH HOH . E 4 HOH A 80 380 49 HOH HOH . E 4 HOH A 81 381 135 HOH HOH . E 4 HOH A 82 382 58 HOH HOH . E 4 HOH A 83 383 42 HOH HOH . E 4 HOH A 84 384 152 HOH HOH . E 4 HOH A 85 385 34 HOH HOH . E 4 HOH A 86 386 29 HOH HOH . E 4 HOH A 87 387 59 HOH HOH . E 4 HOH A 88 388 85 HOH HOH . E 4 HOH A 89 389 86 HOH HOH . E 4 HOH A 90 390 44 HOH HOH . E 4 HOH A 91 391 45 HOH HOH . E 4 HOH A 92 392 55 HOH HOH . E 4 HOH A 93 393 150 HOH HOH . E 4 HOH A 94 394 61 HOH HOH . E 4 HOH A 95 395 80 HOH HOH . E 4 HOH A 96 396 67 HOH HOH . E 4 HOH A 97 397 89 HOH HOH . E 4 HOH A 98 398 11 HOH HOH . E 4 HOH A 99 399 104 HOH HOH . E 4 HOH A 100 400 91 HOH HOH . E 4 HOH A 101 401 47 HOH HOH . E 4 HOH A 102 402 143 HOH HOH . E 4 HOH A 103 403 128 HOH HOH . E 4 HOH A 104 404 139 HOH HOH . E 4 HOH A 105 405 103 HOH HOH . E 4 HOH A 106 406 70 HOH HOH . E 4 HOH A 107 407 63 HOH HOH . E 4 HOH A 108 408 151 HOH HOH . E 4 HOH A 109 409 137 HOH HOH . E 4 HOH A 110 410 112 HOH HOH . E 4 HOH A 111 411 110 HOH HOH . E 4 HOH A 112 412 93 HOH HOH . E 4 HOH A 113 413 111 HOH HOH . E 4 HOH A 114 414 94 HOH HOH . E 4 HOH A 115 415 136 HOH HOH . E 4 HOH A 116 416 133 HOH HOH . E 4 HOH A 117 417 124 HOH HOH . E 4 HOH A 118 418 73 HOH HOH . E 4 HOH A 119 419 131 HOH HOH . E 4 HOH A 120 420 140 HOH HOH . E 4 HOH A 121 421 72 HOH HOH . E 4 HOH A 122 422 102 HOH HOH . E 4 HOH A 123 423 121 HOH HOH . E 4 HOH A 124 424 100 HOH HOH . E 4 HOH A 125 425 116 HOH HOH . E 4 HOH A 126 426 109 HOH HOH . E 4 HOH A 127 427 148 HOH HOH . E 4 HOH A 128 428 74 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N3 K69 . . . B 2 -26.626 9.825 11.538 0.76 37.66 ? N3 K69 201 A 1 HETATM 2 C C16 K69 . . . B 2 -23.525 9.172 18.29 0.76 35.5 ? C16 K69 201 A 1 HETATM 3 C C14 K69 . . . B 2 -25.145 8.673 16.618 0.76 33.54 ? C14 K69 201 A 1 HETATM 4 C C12 K69 . . . B 2 -24.65 6.027 11.872 0.76 54.85 ? C12 K69 201 A 1 HETATM 5 C C9 K69 . . . B 2 -27.44 10.608 12.243 0.76 33.43 ? C9 K69 201 A 1 HETATM 6 C C15 K69 . . . B 2 -24.181 8.232 17.51 0.76 33.84 ? C15 K69 201 A 1 HETATM 7 N N2 K69 . . . B 2 -26.374 10.505 15.568 0.76 33.33 ? N2 K69 201 A 1 HETATM 8 C C13 K69 . . . B 2 -24.052 7.366 12.201 0.76 51.5 ? C13 K69 201 A 1 HETATM 9 C C11 K69 . . . B 2 -25.534 6.816 9.873 0.76 54.69 ? C11 K69 201 A 1 HETATM 10 C C10 K69 . . . B 2 -24.979 8.194 10.106 0.76 50.75 ? C10 K69 201 A 1 HETATM 11 C C8 K69 . . . B 2 -25.663 9.234 12.242 0.76 39.89 ? C8 K69 201 A 1 HETATM 12 O O1 K69 . . . B 2 -24.719 5.816 10.469 0.76 56.12 ? O1 K69 201 A 1 HETATM 13 N N1 K69 . . . B 2 -23.002 11.194 19.068 0.76 36.99 ? N1 K69 201 A 1 HETATM 14 C C7 K69 . . . B 2 -25.518 9.421 13.613 0.76 37.11 ? C7 K69 201 A 1 HETATM 15 C C3 K69 . . . B 2 -23.833 10.516 18.185 0.76 35.7 ? C3 K69 201 A 1 HETATM 16 C C1 K69 . . . B 2 -22.175 10.304 19.714 0.76 37.63 ? C1 K69 201 A 1 HETATM 17 C C2 K69 . . . B 2 -22.993 12.631 19.305 0.76 36.93 ? C2 K69 201 A 1 HETATM 18 C C4 K69 . . . B 2 -24.794 10.966 17.299 0.76 34.16 ? C4 K69 201 A 1 HETATM 19 C C5 K69 . . . B 2 -25.447 10.029 16.505 0.76 34.13 ? C5 K69 201 A 1 HETATM 20 C C6 K69 . . . B 2 -26.44 10.267 14.22 0.76 33.81 ? C6 K69 201 A 1 HETATM 21 N N5 K69 . . . B 2 -24.814 8.427 11.541 0.76 47.53 ? N5 K69 201 A 1 HETATM 22 N N4 K69 . . . B 2 -27.419 10.871 13.548 0.76 31.65 ? N4 K69 201 A 1 HETATM 23 O O K69 . . . B 2 -21.311 10.565 20.525 0.76 37.81 ? O K69 201 A 1 HETATM 24 N N K69 . . . B 2 -22.509 9.059 19.232 0.76 37.09 ? N K69 201 A 1 HETATM 25 C C K69 . . . B 2 -21.873 7.822 19.666 0.76 39.91 ? C K69 201 A 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 25 #