data_7ZWX # _model_server_result.job_id 8g8AlU8-1Mi4069SNTXQlQ _model_server_result.datetime_utc '2024-11-12 21:43:23' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zwx # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 7ZWX # _exptl.entry_id 7ZWX _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 355.391 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 6-[1,3-benzodioxol-5-ylmethyl(methyl)amino]-1-~{tert}-butyl-5~{H}-pyrazolo[3,4-d]pyrimidin-4-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 7ZWX _cell.length_a 67.252 _cell.length_b 67.252 _cell.length_c 165.146 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZWX _symmetry.cell_setting ? _symmetry.Int_Tables_number 178 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 61 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 12_555 x,x-y,-z+1/6 0.5 0.866025 0 0.866025 -0.5 0 0 0 -1 0 0 27.524333 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C18 H21 N5 O3' _chem_comp.formula_weight 355.391 _chem_comp.id KA0 _chem_comp.mon_nstd_flag . _chem_comp.name 6-[1,3-benzodioxol-5-ylmethyl(methyl)amino]-1-~{tert}-butyl-5~{H}-pyrazolo[3,4-d]pyrimidin-4-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C15 C13 KA0 sing 191 n n N2 C12 KA0 doub 192 n y N2 N3 KA0 sing 193 n y C12 C11 KA0 sing 194 n y C13 N3 KA0 sing 195 n n C13 C14 KA0 sing 196 n n C13 C16 KA0 sing 197 n n N3 C10 KA0 sing 198 n y C11 C10 KA0 doub 199 n y C11 C17 KA0 sing 200 n n C10 N1 KA0 sing 201 n n O2 C17 KA0 doub 202 n n C17 N4 KA0 sing 203 n n N1 C9 KA0 doub 204 n n N4 C9 KA0 sing 205 n n C9 N KA0 sing 206 n n N C1 KA0 sing 207 n n N C KA0 sing 208 n n C1 C2 KA0 sing 209 n n C8 C2 KA0 doub 210 n y C8 C7 KA0 sing 211 n y C2 C3 KA0 sing 212 n y O1 C7 KA0 sing 213 n n O1 C6 KA0 sing 214 n n C7 C5 KA0 doub 215 n y C6 O KA0 sing 216 n n C3 C4 KA0 doub 217 n y C5 C4 KA0 sing 218 n y C5 O KA0 sing 219 n n C1 H1 KA0 sing 220 n n C1 H2 KA0 sing 221 n n C3 H3 KA0 sing 222 n n C4 H4 KA0 sing 223 n n C12 H5 KA0 sing 224 n n C16 H6 KA0 sing 225 n n C16 H7 KA0 sing 226 n n C16 H8 KA0 sing 227 n n C15 H9 KA0 sing 228 n n C15 H10 KA0 sing 229 n n C15 H11 KA0 sing 230 n n C14 H12 KA0 sing 231 n n C14 H13 KA0 sing 232 n n C14 H14 KA0 sing 233 n n N4 H15 KA0 sing 234 n n C H16 KA0 sing 235 n n C H17 KA0 sing 236 n n C H18 KA0 sing 237 n n C8 H19 KA0 sing 238 n n C6 H20 KA0 sing 239 n n C6 H21 KA0 sing 240 n n # _atom_sites.entry_id 7ZWX _atom_sites.fract_transf_matrix[1][1] 0.014869 _atom_sites.fract_transf_matrix[1][2] 0.008585 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01717 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006055 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 KA0 A 1 201 200 KA0 23B . D 4 EDO A 1 202 1 EDO EDO . E 4 EDO A 1 203 2 EDO EDO . F 4 EDO A 1 204 3 EDO EDO . G 4 EDO A 1 205 4 EDO EDO . H 5 CL A 1 206 1 CL CL . I 6 DMS A 1 207 1 DMS DMS . J 7 HOH A 1 301 174 HOH HOH . J 7 HOH A 2 302 154 HOH HOH . J 7 HOH A 3 303 112 HOH HOH . J 7 HOH A 4 304 196 HOH HOH . J 7 HOH A 5 305 66 HOH HOH . J 7 HOH A 6 306 111 HOH HOH . J 7 HOH A 7 307 7 HOH HOH . J 7 HOH A 8 308 169 HOH HOH . J 7 HOH A 9 309 186 HOH HOH . J 7 HOH A 10 310 95 HOH HOH . J 7 HOH A 11 311 77 HOH HOH . J 7 HOH A 12 312 181 HOH HOH . J 7 HOH A 13 313 49 HOH HOH . J 7 HOH A 14 314 29 HOH HOH . J 7 HOH A 15 315 114 HOH HOH . J 7 HOH A 16 316 60 HOH HOH . J 7 HOH A 17 317 115 HOH HOH . J 7 HOH A 18 318 12 HOH HOH . J 7 HOH A 19 319 75 HOH HOH . J 7 HOH A 20 320 35 HOH HOH . J 7 HOH A 21 321 156 HOH HOH . J 7 HOH A 22 322 119 HOH HOH . J 7 HOH A 23 323 14 HOH HOH . J 7 HOH A 24 324 179 HOH HOH . J 7 HOH A 25 325 79 HOH HOH . J 7 HOH A 26 326 73 HOH HOH . J 7 HOH A 27 327 180 HOH HOH . J 7 HOH A 28 328 19 HOH HOH . J 7 HOH A 29 329 23 HOH HOH . J 7 HOH A 30 330 18 HOH HOH . J 7 HOH A 31 331 140 HOH HOH . J 7 HOH A 32 332 102 HOH HOH . J 7 HOH A 33 333 6 HOH HOH . J 7 HOH A 34 334 38 HOH HOH . J 7 HOH A 35 335 30 HOH HOH . J 7 HOH A 36 336 46 HOH HOH . J 7 HOH A 37 337 144 HOH HOH . J 7 HOH A 38 338 123 HOH HOH . J 7 HOH A 39 339 93 HOH HOH . J 7 HOH A 40 340 160 HOH HOH . J 7 HOH A 41 341 87 HOH HOH . J 7 HOH A 42 342 184 HOH HOH . J 7 HOH A 43 343 118 HOH HOH . J 7 HOH A 44 344 61 HOH HOH . J 7 HOH A 45 345 113 HOH HOH . J 7 HOH A 46 346 16 HOH HOH . J 7 HOH A 47 347 84 HOH HOH . J 7 HOH A 48 348 137 HOH HOH . J 7 HOH A 49 349 15 HOH HOH . J 7 HOH A 50 350 10 HOH HOH . J 7 HOH A 51 351 13 HOH HOH . J 7 HOH A 52 352 171 HOH HOH . J 7 HOH A 53 353 4 HOH HOH . J 7 HOH A 54 354 52 HOH HOH . J 7 HOH A 55 355 3 HOH HOH . J 7 HOH A 56 356 56 HOH HOH . J 7 HOH A 57 357 5 HOH HOH . J 7 HOH A 58 358 120 HOH HOH . J 7 HOH A 59 359 72 HOH HOH . J 7 HOH A 60 360 27 HOH HOH . J 7 HOH A 61 361 44 HOH HOH . J 7 HOH A 62 362 183 HOH HOH . J 7 HOH A 63 363 21 HOH HOH . J 7 HOH A 64 364 67 HOH HOH . J 7 HOH A 65 365 92 HOH HOH . J 7 HOH A 66 366 69 HOH HOH . J 7 HOH A 67 367 2 HOH HOH . J 7 HOH A 68 368 76 HOH HOH . J 7 HOH A 69 369 78 HOH HOH . J 7 HOH A 70 370 22 HOH HOH . J 7 HOH A 71 371 62 HOH HOH . J 7 HOH A 72 372 24 HOH HOH . J 7 HOH A 73 373 175 HOH HOH . J 7 HOH A 74 374 82 HOH HOH . J 7 HOH A 75 375 9 HOH HOH . J 7 HOH A 76 376 177 HOH HOH . J 7 HOH A 77 377 83 HOH HOH . J 7 HOH A 78 378 191 HOH HOH . J 7 HOH A 79 379 51 HOH HOH . J 7 HOH A 80 380 36 HOH HOH . J 7 HOH A 81 381 197 HOH HOH . J 7 HOH A 82 382 34 HOH HOH . J 7 HOH A 83 383 25 HOH HOH . J 7 HOH A 84 384 104 HOH HOH . J 7 HOH A 85 385 20 HOH HOH . J 7 HOH A 86 386 17 HOH HOH . J 7 HOH A 87 387 41 HOH HOH . J 7 HOH A 88 388 68 HOH HOH . J 7 HOH A 89 389 131 HOH HOH . J 7 HOH A 90 390 124 HOH HOH . J 7 HOH A 91 391 159 HOH HOH . J 7 HOH A 92 392 108 HOH HOH . J 7 HOH A 93 393 50 HOH HOH . J 7 HOH A 94 394 192 HOH HOH . J 7 HOH A 95 395 48 HOH HOH . J 7 HOH A 96 396 173 HOH HOH . J 7 HOH A 97 397 88 HOH HOH . J 7 HOH A 98 398 57 HOH HOH . J 7 HOH A 99 399 200 HOH HOH . J 7 HOH A 100 400 65 HOH HOH . J 7 HOH A 101 401 45 HOH HOH . J 7 HOH A 102 402 8 HOH HOH . J 7 HOH A 103 403 162 HOH HOH . J 7 HOH A 104 404 40 HOH HOH . J 7 HOH A 105 405 26 HOH HOH . J 7 HOH A 106 406 147 HOH HOH . J 7 HOH A 107 407 85 HOH HOH . J 7 HOH A 108 408 70 HOH HOH . J 7 HOH A 109 409 74 HOH HOH . J 7 HOH A 110 410 37 HOH HOH . J 7 HOH A 111 411 96 HOH HOH . J 7 HOH A 112 412 152 HOH HOH . J 7 HOH A 113 413 55 HOH HOH . J 7 HOH A 114 414 81 HOH HOH . J 7 HOH A 115 415 80 HOH HOH . J 7 HOH A 116 416 54 HOH HOH . J 7 HOH A 117 417 116 HOH HOH . J 7 HOH A 118 418 126 HOH HOH . J 7 HOH A 119 419 201 HOH HOH . J 7 HOH A 120 420 195 HOH HOH . J 7 HOH A 121 421 121 HOH HOH . J 7 HOH A 122 422 122 HOH HOH . J 7 HOH A 123 423 101 HOH HOH . J 7 HOH A 124 424 94 HOH HOH . J 7 HOH A 125 425 204 HOH HOH . J 7 HOH A 126 426 132 HOH HOH . J 7 HOH A 127 427 155 HOH HOH . J 7 HOH A 128 428 128 HOH HOH . J 7 HOH A 129 429 163 HOH HOH . J 7 HOH A 130 430 182 HOH HOH . J 7 HOH A 131 431 129 HOH HOH . J 7 HOH A 132 432 188 HOH HOH . J 7 HOH A 133 433 145 HOH HOH . J 7 HOH A 134 434 99 HOH HOH . J 7 HOH A 135 435 127 HOH HOH . J 7 HOH A 136 436 53 HOH HOH . J 7 HOH A 137 437 107 HOH HOH . J 7 HOH A 138 438 100 HOH HOH . J 7 HOH A 139 439 98 HOH HOH . J 7 HOH A 140 440 187 HOH HOH . J 7 HOH A 141 441 189 HOH HOH . J 7 HOH A 142 442 139 HOH HOH . J 7 HOH A 143 443 151 HOH HOH . J 7 HOH A 144 444 190 HOH HOH . J 7 HOH A 145 445 164 HOH HOH . J 7 HOH A 146 446 194 HOH HOH . J 7 HOH A 147 447 106 HOH HOH . J 7 HOH A 148 448 198 HOH HOH . J 7 HOH A 149 449 135 HOH HOH . J 7 HOH A 150 450 150 HOH HOH . J 7 HOH A 151 451 117 HOH HOH . J 7 HOH A 152 452 158 HOH HOH . J 7 HOH A 153 453 110 HOH HOH . J 7 HOH A 154 454 176 HOH HOH . J 7 HOH A 155 455 178 HOH HOH . J 7 HOH A 156 456 199 HOH HOH . J 7 HOH A 157 457 203 HOH HOH . J 7 HOH A 158 458 134 HOH HOH . J 7 HOH A 159 459 161 HOH HOH . J 7 HOH A 160 460 149 HOH HOH . J 7 HOH A 161 461 97 HOH HOH . J 7 HOH A 162 462 202 HOH HOH . K 7 HOH B 1 101 193 HOH HOH . K 7 HOH B 2 102 90 HOH HOH . K 7 HOH B 3 103 43 HOH HOH . K 7 HOH B 4 104 42 HOH HOH . K 7 HOH B 5 105 32 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 KA0 . A . C 3 57.468 49.167 16.217 0.63 62.89 ? C1 KA0 201 A 1 HETATM 2 C C1 KA0 . B . C 3 57.476 49.127 16.217 0.36 19.48 ? C1 KA0 201 A 1 HETATM 3 O O1 KA0 . A . C 3 59.012 53.862 16.853 0.63 55.45 ? O1 KA0 201 A 1 HETATM 4 O O1 KA0 . B . C 3 55.917 52.558 19.476 0.36 28.48 ? O1 KA0 201 A 1 HETATM 5 C C2 KA0 . A . C 3 57.391 50.533 16.834 0.63 60.14 ? C2 KA0 201 A 1 HETATM 6 C C2 KA0 . B . C 3 57.424 50.516 16.783 0.36 20.01 ? C2 KA0 201 A 1 HETATM 7 O O2 KA0 . A . C 3 62.411 47.093 13.541 0.63 69.46 ? O2 KA0 201 A 1 HETATM 8 O O2 KA0 . B . C 3 62.423 47.07 13.52 0.36 13.38 ? O2 KA0 201 A 1 HETATM 9 C C3 KA0 . A . C 3 56.491 50.796 17.863 0.63 59.21 ? C3 KA0 201 A 1 HETATM 10 C C3 KA0 . B . C 3 58.235 51.522 16.261 0.36 20.14 ? C3 KA0 201 A 1 HETATM 11 C C4 KA0 . A . C 3 56.432 52.035 18.476 0.63 58.1 ? C4 KA0 201 A 1 HETATM 12 C C4 KA0 . B . C 3 58.246 52.797 16.8 0.36 22.22 ? C4 KA0 201 A 1 HETATM 13 C C5 KA0 . A . C 3 57.307 53.009 18.048 0.63 57.35 ? C5 KA0 201 A 1 HETATM 14 C C5 KA0 . B . C 3 57.424 53.048 17.879 0.36 24.68 ? C5 KA0 201 A 1 HETATM 15 C C17 KA0 . A . C 3 61.354 47.708 13.545 0.63 68.92 ? C17 KA0 201 A 1 HETATM 16 C C17 KA0 . B . C 3 61.372 47.7 13.532 0.36 10.37 ? C17 KA0 201 A 1 HETATM 17 C C11 KA0 . A . C 3 60.756 48.367 12.418 0.63 70.17 ? C11 KA0 201 A 1 HETATM 18 C C11 KA0 . B . C 3 60.764 48.36 12.409 0.36 14.14 ? C11 KA0 201 A 1 HETATM 19 C C12 KA0 . A . C 3 61.01 48.509 11.046 0.63 71 ? C12 KA0 201 A 1 HETATM 20 C C12 KA0 . B . C 3 61.011 48.515 11.036 0.36 16.52 ? C12 KA0 201 A 1 HETATM 21 N N2 KA0 . A . C 3 60.095 49.255 10.451 0.63 71.61 ? N2 KA0 201 A 1 HETATM 22 N N2 KA0 . B . C 3 60.091 49.264 10.451 0.36 19.29 ? N2 KA0 201 A 1 HETATM 23 N N3 KA0 . A . C 3 59.21 49.619 11.451 0.63 71.4 ? N3 KA0 201 A 1 HETATM 24 N N3 KA0 . B . C 3 59.207 49.618 11.459 0.36 18.34 ? N3 KA0 201 A 1 HETATM 25 C C13 KA0 . A . C 3 58.025 50.494 11.169 0.63 72.16 ? C13 KA0 201 A 1 HETATM 26 C C13 KA0 . B . C 3 58.019 50.492 11.181 0.36 19.75 ? C13 KA0 201 A 1 HETATM 27 C C16 KA0 . A . C 3 58.136 51.749 12.027 0.63 72.18 ? C16 KA0 201 A 1 HETATM 28 C C16 KA0 . B . C 3 58.124 51.747 12.04 0.36 21.69 ? C16 KA0 201 A 1 HETATM 29 C C15 KA0 . A . C 3 58.024 50.873 9.692 0.63 72.29 ? C15 KA0 201 A 1 HETATM 30 C C15 KA0 . B . C 3 58.016 50.872 9.704 0.36 21.12 ? C15 KA0 201 A 1 HETATM 31 C C14 KA0 . A . C 3 56.755 49.73 11.521 0.63 72.24 ? C14 KA0 201 A 1 HETATM 32 C C14 KA0 . B . C 3 56.749 49.725 11.53 0.36 19.52 ? C14 KA0 201 A 1 HETATM 33 C C10 KA0 . A . C 3 59.585 49.093 12.637 0.63 70.23 ? C10 KA0 201 A 1 HETATM 34 C C10 KA0 . B . C 3 59.59 49.084 12.64 0.36 15.88 ? C10 KA0 201 A 1 HETATM 35 N N1 KA0 . A . C 3 58.925 49.257 13.799 0.63 68.97 ? N1 KA0 201 A 1 HETATM 36 N N1 KA0 . B . C 3 58.939 49.244 13.809 0.36 14 ? N1 KA0 201 A 1 HETATM 37 N N4 KA0 . A . C 3 60.652 47.886 14.713 0.63 68.08 ? N4 KA0 201 A 1 HETATM 38 N N4 KA0 . B . C 3 60.679 47.878 14.708 0.36 13.43 ? N4 KA0 201 A 1 HETATM 39 C C9 KA0 . A . C 3 59.513 48.633 14.82 0.63 67.62 ? C9 KA0 201 A 1 HETATM 40 C C9 KA0 . B . C 3 59.536 48.62 14.825 0.36 15.81 ? C9 KA0 201 A 1 HETATM 41 N N KA0 . A . C 3 58.939 48.857 16.167 0.63 65.29 ? N KA0 201 A 1 HETATM 42 N N KA0 . B . C 3 58.95 48.823 16.181 0.36 18.49 ? N KA0 201 A 1 HETATM 43 C C KA0 . A . C 3 59.313 47.774 17.12 0.63 65.23 ? C KA0 201 A 1 HETATM 44 C C KA0 . B . C 3 59.313 47.717 17.111 0.36 14.37 ? C KA0 201 A 1 HETATM 45 C C8 KA0 . A . C 3 58.25 51.545 16.41 0.63 58.1 ? C8 KA0 201 A 1 HETATM 46 C C8 KA0 . B . C 3 56.598 50.805 17.865 0.36 20.77 ? C8 KA0 201 A 1 HETATM 47 C C7 KA0 . A . C 3 58.201 52.767 17.042 0.63 56.99 ? C7 KA0 201 A 1 HETATM 48 C C7 KA0 . B . C 3 56.619 52.072 18.397 0.36 23.97 ? C7 KA0 201 A 1 HETATM 49 C C6 KA0 . A . C 3 58.54 54.851 17.769 0.63 55.56 ? C6 KA0 201 A 1 HETATM 50 C C6 KA0 . B . C 3 56.308 53.926 19.602 0.36 28.49 ? C6 KA0 201 A 1 HETATM 51 O O KA0 . A . C 3 57.467 54.289 18.526 0.63 56.21 ? O KA0 201 A 1 HETATM 52 O O KA0 . B . C 3 57.272 54.217 18.588 0.36 27.9 ? O KA0 201 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 52 #