data_7ZXY # _model_server_result.job_id OkCC9LdYra6eeI6SDu-PiA _model_server_result.datetime_utc '2024-11-04 22:39:57' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"U","auth_seq_id":201}' # _entry.id 7ZXY # _exptl.entry_id 7ZXY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 893.489 _entity.id 12 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'CHLOROPHYLL A' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZXY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 12 U N N ? 12 HA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? # _chem_comp.formula 'C55 H72 Mg N4 O5' _chem_comp.formula_weight 893.489 _chem_comp.id CLA _chem_comp.mon_nstd_flag . _chem_comp.name 'CHLOROPHYLL A' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 7ZXY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 ECH A 1 301 101 ECH ECH . R 10 HEM A 1 302 305 HEM HEM . S 10 HEM A 1 303 306 HEM HEM . T 11 HEC A 1 304 307 HEC HEM . U 12 CLA B 1 201 201 CLA CLA . V 13 PGV B 1 202 202 PGV PGV . W 13 PGV B 1 203 309 PGV PGV . X 11 HEC C 1 301 301 HEC HEC . Y 14 LFA C 1 302 102 LFA LFA . Z 13 PGV C 1 303 302 PGV PGV . AA 15 FES D 1 201 203 FES FES . BA 14 LFA E 1 101 103 LFA LFA . CA 9 ECH I 1 301 101 ECH ECH . DA 13 PGV I 1 302 308 PGV PGV . EA 10 HEM I 1 303 308 HEM HEM . FA 10 HEM I 1 304 309 HEM HEM . GA 11 HEC I 1 305 310 HEC HEM . HA 12 CLA J 1 201 201 CLA CLA . IA 13 PGV J 1 202 201 PGV PGV . JA 13 PGV J 1 203 310 PGV PGV . KA 13 PGV J 1 204 311 PGV PGV . LA 11 HEC K 1 301 301 HEC HEC . MA 15 FES L 1 201 204 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 MG MG CLA . . . U 12 100.017 110.581 93.267 1 16.05 ? MG CLA 201 B 1 HETATM 2 C CHA CLA . . . U 12 102.764 112.645 93.748 1 16.05 ? CHA CLA 201 B 1 HETATM 3 C CHB CLA . . . U 12 101.383 108.273 95.354 1 16.05 ? CHB CLA 201 B 1 HETATM 4 C CHC CLA . . . U 12 97.235 108.613 92.813 1 16.05 ? CHC CLA 201 B 1 HETATM 5 C CHD CLA . . . U 12 98.621 113.023 91.115 1 16.05 ? CHD CLA 201 B 1 HETATM 6 N NA CLA . . . U 12 101.802 110.492 94.35 1 16.05 ? NA CLA 201 B 1 HETATM 7 C C1A CLA . . . U 12 102.817 111.458 94.433 1 16.05 ? C1A CLA 201 B 1 HETATM 8 C C2A CLA . . . U 12 103.954 110.978 95.343 1 16.05 ? C2A CLA 201 B 1 HETATM 9 C C3A CLA . . . U 12 103.493 109.574 95.797 1 16.05 ? C3A CLA 201 B 1 HETATM 10 C C4A CLA . . . U 12 102.128 109.414 95.129 1 16.05 ? C4A CLA 201 B 1 HETATM 11 C CMA CLA . . . U 12 104.459 108.496 95.375 1 16.05 ? CMA CLA 201 B 1 HETATM 12 C CAA CLA . . . U 12 104.189 111.879 96.546 1 16.05 ? CAA CLA 201 B 1 HETATM 13 C CBA CLA . . . U 12 102.902 112.401 97.142 1 16.05 ? CBA CLA 201 B 1 HETATM 14 C CGA CLA . . . U 12 103.2 113.351 98.26 1 16.05 ? CGA CLA 201 B 1 HETATM 15 O O1A CLA . . . U 12 103.186 113.146 99.475 1 16.05 ? O1A CLA 201 B 1 HETATM 16 O O2A CLA . . . U 12 103.526 114.601 97.815 1 16.05 ? O2A CLA 201 B 1 HETATM 17 N NB CLA . . . U 12 99.413 108.794 93.966 1 16.05 ? NB CLA 201 B 1 HETATM 18 C C1B CLA . . . U 12 100.121 107.995 94.803 1 16.05 ? C1B CLA 201 B 1 HETATM 19 C C2B CLA . . . U 12 99.363 106.741 95.064 1 16.05 ? C2B CLA 201 B 1 HETATM 20 C C3B CLA . . . U 12 98.189 106.825 94.353 1 16.05 ? C3B CLA 201 B 1 HETATM 21 C C4B CLA . . . U 12 98.208 108.132 93.634 1 16.05 ? C4B CLA 201 B 1 HETATM 22 C CMB CLA . . . U 12 99.862 105.676 95.929 1 16.05 ? CMB CLA 201 B 1 HETATM 23 C CAB CLA . . . U 12 97.114 105.874 94.246 1 16.05 ? CAB CLA 201 B 1 HETATM 24 C CBB CLA . . . U 12 95.827 106.118 94.5 1 16.05 ? CBB CLA 201 B 1 HETATM 25 N NC CLA . . . U 12 98.261 110.785 92.154 1 16.05 ? NC CLA 201 B 1 HETATM 26 C C1C CLA . . . U 12 97.257 109.856 92.116 1 16.05 ? C1C CLA 201 B 1 HETATM 27 C C2C CLA . . . U 12 96.176 110.322 91.256 1 16.05 ? C2C CLA 201 B 1 HETATM 28 C C3C CLA . . . U 12 96.565 111.57 90.77 1 16.05 ? C3C CLA 201 B 1 HETATM 29 C C4C CLA . . . U 12 97.876 111.853 91.341 1 16.05 ? C4C CLA 201 B 1 HETATM 30 C CMC CLA . . . U 12 94.944 109.579 90.993 1 16.05 ? CMC CLA 201 B 1 HETATM 31 C CAC CLA . . . U 12 95.807 112.451 89.868 1 16.05 ? CAC CLA 201 B 1 HETATM 32 C CBC CLA . . . U 12 95.893 112.032 88.422 1 16.05 ? CBC CLA 201 B 1 HETATM 33 N ND CLA . . . U 12 100.535 112.385 92.517 1 16.05 ? ND CLA 201 B 1 HETATM 34 C C1D CLA . . . U 12 99.862 113.29 91.654 1 16.05 ? C1D CLA 201 B 1 HETATM 35 C C2D CLA . . . U 12 100.699 114.495 91.471 1 16.05 ? C2D CLA 201 B 1 HETATM 36 C C3D CLA . . . U 12 101.825 114.301 92.251 1 16.05 ? C3D CLA 201 B 1 HETATM 37 C C4D CLA . . . U 12 101.667 112.979 92.889 1 16.05 ? C4D CLA 201 B 1 HETATM 38 C CMD CLA . . . U 12 100.34 115.633 90.628 1 16.05 ? CMD CLA 201 B 1 HETATM 39 C CAD CLA . . . U 12 103.092 114.848 92.693 1 16.05 ? CAD CLA 201 B 1 HETATM 40 O OBD CLA . . . U 12 103.635 115.903 92.393 1 16.05 ? OBD CLA 201 B 1 HETATM 41 C CBD CLA . . . U 12 103.713 113.82 93.685 1 16.05 ? CBD CLA 201 B 1 HETATM 42 C CGD CLA . . . U 12 105.096 113.407 93.269 1 16.05 ? CGD CLA 201 B 1 HETATM 43 O O1D CLA . . . U 12 105.481 113.057 92.151 1 16.05 ? O1D CLA 201 B 1 HETATM 44 O O2D CLA . . . U 12 106.001 113.44 94.283 1 16.05 ? O2D CLA 201 B 1 HETATM 45 C CED CLA . . . U 12 107.379 113.501 93.925 1 16.05 ? CED CLA 201 B 1 HETATM 46 C C1 CLA . . . U 12 104.359 115.396 98.681 1 16.05 ? C1 CLA 201 B 1 HETATM 47 C C2 CLA . . . U 12 103.888 116.798 98.552 1 16.05 ? C2 CLA 201 B 1 HETATM 48 C C3 CLA . . . U 12 104.149 117.57 97.485 1 16.05 ? C3 CLA 201 B 1 HETATM 49 C C4 CLA . . . U 12 104.942 117.083 96.331 1 16.05 ? C4 CLA 201 B 1 HETATM 50 C C5 CLA . . . U 12 103.649 118.971 97.414 1 16.05 ? C5 CLA 201 B 1 HETATM 51 C C6 CLA . . . U 12 102.538 119.25 98.408 1 16.05 ? C6 CLA 201 B 1 HETATM 52 C C7 CLA . . . U 12 103.006 120.189 99.5 1 16.05 ? C7 CLA 201 B 1 HETATM 53 C C8 CLA . . . U 12 102.137 121.439 99.584 1 16.05 ? C8 CLA 201 B 1 HETATM 54 C C9 CLA . . . U 12 102.863 122.544 100.325 1 16.05 ? C9 CLA 201 B 1 HETATM 55 C C10 CLA . . . U 12 100.802 121.138 100.256 1 16.05 ? C10 CLA 201 B 1 HETATM 56 C C11 CLA . . . U 12 100.963 120.82 101.727 1 16.05 ? C11 CLA 201 B 1 HETATM 57 C C12 CLA . . . U 12 99.637 120.866 102.459 1 16.05 ? C12 CLA 201 B 1 HETATM 58 C C13 CLA . . . U 12 99.145 122.299 102.621 1 16.05 ? C13 CLA 201 B 1 HETATM 59 C C14 CLA . . . U 12 100.074 123.085 103.523 1 16.05 ? C14 CLA 201 B 1 HETATM 60 C C15 CLA . . . U 12 97.719 122.348 103.161 1 16.05 ? C15 CLA 201 B 1 HETATM 61 C C16 CLA . . . U 12 97.134 123.742 103.05 1 16.05 ? C16 CLA 201 B 1 HETATM 62 C C17 CLA . . . U 12 96.058 123.818 101.986 1 16.05 ? C17 CLA 201 B 1 HETATM 63 C C18 CLA . . . U 12 95.651 125.252 101.67 1 16.05 ? C18 CLA 201 B 1 HETATM 64 C C19 CLA . . . U 12 94.372 125.288 100.858 1 16.05 ? C19 CLA 201 B 1 HETATM 65 C C20 CLA . . . U 12 95.48 126.06 102.939 1 16.05 ? C20 CLA 201 B 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 36 _model_server_stats.query_time_ms 306 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 65 #