data_7ZXY # _model_server_result.job_id daAaCwMUVGml16o2lqM22w _model_server_result.datetime_utc '2024-11-04 22:37:58' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 7zxy # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"V","auth_seq_id":202}' # _entry.id 7ZXY # _exptl.entry_id 7ZXY _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 749.007 _entity.id 13 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _entity.pdbx_number_of_molecules 7 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 7ZXY _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 7ZXY _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexadecameric _pdbx_struct_assembly.oligomeric_count 16 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 13 V N N ? 13 W N N ? 13 Z N N ? 13 DA N N ? 13 IA N N ? 13 JA N N ? 13 KA N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? # _chem_comp.formula 'C40 H77 O10 P' _chem_comp.formula_weight 749.007 _chem_comp.id PGV _chem_comp.mon_nstd_flag . _chem_comp.name '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms PHOSPHATIDYLGLYCEROL;2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL # _atom_sites.entry_id 7ZXY _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code Q 9 ECH A 1 301 101 ECH ECH . R 10 HEM A 1 302 305 HEM HEM . S 10 HEM A 1 303 306 HEM HEM . T 11 HEC A 1 304 307 HEC HEM . U 12 CLA B 1 201 201 CLA CLA . V 13 PGV B 1 202 202 PGV PGV . W 13 PGV B 1 203 309 PGV PGV . X 11 HEC C 1 301 301 HEC HEC . Y 14 LFA C 1 302 102 LFA LFA . Z 13 PGV C 1 303 302 PGV PGV . AA 15 FES D 1 201 203 FES FES . BA 14 LFA E 1 101 103 LFA LFA . CA 9 ECH I 1 301 101 ECH ECH . DA 13 PGV I 1 302 308 PGV PGV . EA 10 HEM I 1 303 308 HEM HEM . FA 10 HEM I 1 304 309 HEM HEM . GA 11 HEC I 1 305 310 HEC HEM . HA 12 CLA J 1 201 201 CLA CLA . IA 13 PGV J 1 202 201 PGV PGV . JA 13 PGV J 1 203 310 PGV PGV . KA 13 PGV J 1 204 311 PGV PGV . LA 11 HEC K 1 301 301 HEC HEC . MA 15 FES L 1 201 204 FES FES . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P P PGV . . . V 13 89.607 98.509 95.169 1 24.38 ? P PGV 202 B 1 HETATM 2 C C01 PGV . . . V 13 86.768 102.504 95.989 1 24.38 ? C01 PGV 202 B 1 HETATM 3 C C02 PGV . . . V 13 88.043 101.992 95.291 1 24.38 ? C02 PGV 202 B 1 HETATM 4 C C03 PGV . . . V 13 88.115 100.481 95.4 1 24.38 ? C03 PGV 202 B 1 HETATM 5 C C04 PGV . . . V 13 88.202 96.628 94.417 1 24.38 ? C04 PGV 202 B 1 HETATM 6 C C05 PGV . . . V 13 86.962 95.781 94.676 1 24.38 ? C05 PGV 202 B 1 HETATM 7 C C06 PGV . . . V 13 86.411 95.407 93.283 1 24.38 ? C06 PGV 202 B 1 HETATM 8 O O01 PGV . . . V 13 89.176 102.612 95.885 1 24.38 ? O01 PGV 202 B 1 HETATM 9 O O02 PGV . . . V 13 90.215 103.076 93.949 1 24.38 ? O02 PGV 202 B 1 HETATM 10 O O03 PGV . . . V 13 85.661 102.355 95.114 1 24.38 ? O03 PGV 202 B 1 HETATM 11 O O04 PGV . . . V 13 85.902 104.47 94.448 1 24.38 ? O04 PGV 202 B 1 HETATM 12 O O05 PGV . . . V 13 86.006 96.475 95.403 1 24.38 ? O05 PGV 202 B 1 HETATM 13 O O06 PGV . . . V 13 87.252 94.412 92.789 1 24.38 ? O06 PGV 202 B 1 HETATM 14 O O11 PGV . . . V 13 89.426 100.099 95.632 1 24.38 ? O11 PGV 202 B 1 HETATM 15 O O12 PGV . . . V 13 88.082 97.826 95.109 1 24.38 ? O12 PGV 202 B 1 HETATM 16 O O13 PGV . . . V 13 90.1 98.533 93.786 1 24.38 ? O13 PGV 202 B 1 HETATM 17 O O14 PGV . . . V 13 90.301 97.83 96.329 1 24.38 ? O14 PGV 202 B 1 HETATM 18 C C1 PGV . . . V 13 89.933 103.412 95.086 1 24.38 ? C1 PGV 202 B 1 HETATM 19 C C2 PGV . . . V 13 90.375 104.713 95.71 1 24.38 ? C2 PGV 202 B 1 HETATM 20 C C3 PGV . . . V 13 91.694 105.165 95.08 1 24.38 ? C3 PGV 202 B 1 HETATM 21 C C4 PGV . . . V 13 92.536 105.945 96.085 1 24.38 ? C4 PGV 202 B 1 HETATM 22 C C5 PGV . . . V 13 92.166 107.422 96.086 1 24.38 ? C5 PGV 202 B 1 HETATM 23 C C6 PGV . . . V 13 92.69 108.098 94.829 1 24.38 ? C6 PGV 202 B 1 HETATM 24 C C7 PGV . . . V 13 93.336 109.433 95.169 1 24.38 ? C7 PGV 202 B 1 HETATM 25 C C8 PGV . . . V 13 94.696 109.213 95.811 1 24.38 ? C8 PGV 202 B 1 HETATM 26 C C9 PGV . . . V 13 95.373 110.55 96.071 1 24.38 ? C9 PGV 202 B 1 HETATM 27 C C10 PGV . . . V 13 95.596 111.271 94.758 1 24.38 ? C10 PGV 202 B 1 HETATM 28 C C11 PGV . . . V 13 96.357 112.531 94.974 1 24.38 ? C11 PGV 202 B 1 HETATM 29 C C12 PGV . . . V 13 95.814 113.715 94.707 1 24.38 ? C12 PGV 202 B 1 HETATM 30 C C13 PGV . . . V 13 94.424 113.828 94.184 1 24.38 ? C13 PGV 202 B 1 HETATM 31 C C14 PGV . . . V 13 94.446 114.286 92.739 1 24.38 ? C14 PGV 202 B 1 HETATM 32 C C15 PGV . . . V 13 93.023 114.44 92.217 1 24.38 ? C15 PGV 202 B 1 HETATM 33 C C16 PGV . . . V 13 93.054 114.771 90.732 1 24.38 ? C16 PGV 202 B 1 HETATM 34 C C17 PGV . . . V 13 91.645 114.992 90.201 1 24.38 ? C17 PGV 202 B 1 HETATM 35 C C18 PGV . . . V 13 91.692 115.282 88.713 1 24.38 ? C18 PGV 202 B 1 HETATM 36 C C19 PGV . . . V 13 85.467 103.352 94.217 1 24.38 ? C19 PGV 202 B 1 HETATM 37 C C20 PGV . . . V 13 84.708 102.961 92.971 1 24.38 ? C20 PGV 202 B 1 HETATM 38 C C21 PGV . . . V 13 84.617 104.182 92.05 1 24.38 ? C21 PGV 202 B 1 HETATM 39 C C22 PGV . . . V 13 84.366 103.773 90.604 1 24.38 ? C22 PGV 202 B 1 HETATM 40 C C23 PGV . . . V 13 83.029 103.054 90.48 1 24.38 ? C23 PGV 202 B 1 HETATM 41 C C24 PGV . . . V 13 82.878 102.45 89.088 1 24.38 ? C24 PGV 202 B 1 HETATM 42 C C25 PGV . . . V 13 81.945 101.245 89.13 1 24.38 ? C25 PGV 202 B 1 HETATM 43 C C26 PGV . . . V 13 82.419 100.249 90.182 1 24.38 ? C26 PGV 202 B 1 HETATM 44 C C27 PGV . . . V 13 81.685 98.924 90.035 1 24.38 ? C27 PGV 202 B 1 HETATM 45 C C28 PGV . . . V 13 82.237 97.904 91.021 1 24.38 ? C28 PGV 202 B 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 25 _model_server_stats.query_time_ms 313 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 45 #