data_7ZXY
#
_model_server_result.job_id            cUxOcJPlju23BpCXxAKOUw 
_model_server_result.datetime_utc      '2024-11-04 22:33:03' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          7zxy 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"JA","auth_seq_id":203}' 
#
_entry.id    7ZXY 
#
_exptl.entry_id    7ZXY 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              749.007 
_entity.id                          13 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' 
_entity.pdbx_number_of_molecules    7 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            7ZXY 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 7ZXY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexadecameric 
_pdbx_struct_assembly.oligomeric_count      16 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 13 V N N 
? 13 W N N 
? 13 Z N N 
? 13 DA N N 
? 13 IA N N 
? 13 JA N N 
? 13 KA N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 D SG CYS 113 D CYS 125 1_555 D SG CYS 128 D CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? 
covale ? covale1 A SG CYS 42 A CYS 42 1_555 T CAB HEC . A HEC 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.692 ? 
covale ? covale2 C SG CYS 22 C CYS 22 1_555 X CAB HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.657 ? 
covale ? covale3 C SG CYS 25 C CYS 25 1_555 X CAC HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.75 ? 
covale ? covale4 I SG CYS 42 I CYS 42 1_555 GA CAB HEC . I HEC 305 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.752 ? 
covale ? covale5 K SG CYS 22 K CYS 22 1_555 LA CAB HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.686 ? 
covale ? covale6 K SG CYS 25 K CYS 25 1_555 LA CAC HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.747 ? 
metalc ? metalc1 A NE2 HIS 93 A HIS 93 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.735 ? 
metalc ? metalc2 A NE2 HIS 107 A HIS 107 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.04 ? 
metalc ? metalc3 A NE2 HIS 194 A HIS 194 1_555 R FE HEM . A HEM 302 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? 
metalc ? metalc4 A NE2 HIS 209 A HIS 209 1_555 S FE HEM . A HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.21 ? 
metalc ? metalc5 C N TYR 1 C TYR 1 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.665 ? 
metalc ? metalc6 C NE2 HIS 26 C HIS 26 1_555 X FE HEC . C HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
metalc ? metalc7 D SG CYS 108 D CYS 120 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.578 ? 
metalc ? metalc8 D ND1 HIS 110 D HIS 122 1_555 AA FE1 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? 
metalc ? metalc9 D SG CYS 126 D CYS 138 1_555 AA FE2 FES . D FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.171 ? 
metalc ? metalc10 I NE2 HIS 93 I HIS 93 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.106 ? 
metalc ? metalc11 I NE2 HIS 107 I HIS 107 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc12 I NE2 HIS 194 I HIS 194 1_555 EA FE HEM . I HEM 303 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.73 ? 
metalc ? metalc13 I NE2 HIS 209 I HIS 209 1_555 FA FE HEM . I HEM 304 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.17 ? 
metalc ? metalc14 K N TYR 1 K TYR 1 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.647 ? 
metalc ? metalc15 K NE2 HIS 26 K HIS 26 1_555 LA FE HEC . K HEC 301 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.041 ? 
metalc ? metalc16 L SG CYS 108 L CYS 120 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.554 ? 
metalc ? metalc17 L ND1 HIS 110 L HIS 122 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? 
metalc ? metalc18 L SG CYS 126 L CYS 138 1_555 MA FE2 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.267 ? 
metalc ? metalc19 L ND1 HIS 129 L HIS 141 1_555 MA FE1 FES . L FES 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.759 ? 
#
_chem_comp.formula           'C40 H77 O10 P' 
_chem_comp.formula_weight    749.007 
_chem_comp.id                PGV 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     PHOSPHATIDYLGLYCEROL;2-VACCENOYL-1-PALMITOYL-SN-GLYCEROL-3-PHOSPHOGLYCEROL 
#
_atom_sites.entry_id                     7ZXY 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
Q 9 ECH A 1 301 101 ECH ECH . 
R 10 HEM A 1 302 305 HEM HEM . 
S 10 HEM A 1 303 306 HEM HEM . 
T 11 HEC A 1 304 307 HEC HEM . 
U 12 CLA B 1 201 201 CLA CLA . 
V 13 PGV B 1 202 202 PGV PGV . 
W 13 PGV B 1 203 309 PGV PGV . 
X 11 HEC C 1 301 301 HEC HEC . 
Y 14 LFA C 1 302 102 LFA LFA . 
Z 13 PGV C 1 303 302 PGV PGV . 
AA 15 FES D 1 201 203 FES FES . 
BA 14 LFA E 1 101 103 LFA LFA . 
CA 9 ECH I 1 301 101 ECH ECH . 
DA 13 PGV I 1 302 308 PGV PGV . 
EA 10 HEM I 1 303 308 HEM HEM . 
FA 10 HEM I 1 304 309 HEM HEM . 
GA 11 HEC I 1 305 310 HEC HEM . 
HA 12 CLA J 1 201 201 CLA CLA . 
IA 13 PGV J 1 202 201 PGV PGV . 
JA 13 PGV J 1 203 310 PGV PGV . 
KA 13 PGV J 1 204 311 PGV PGV . 
LA 11 HEC K 1 301 301 HEC HEC . 
MA 15 FES L 1 201 204 FES FES . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P P PGV . . . JA 13 129.024 112.022 164.722 1 93.73 ? P PGV 203 J 1 
HETATM 2 C C01 PGV . . . JA 13 130.9 115.275 161.558 1 93.73 ? C01 PGV 203 J 1 
HETATM 3 C C02 PGV . . . JA 13 129.559 114.588 161.885 1 93.73 ? C02 PGV 203 J 1 
HETATM 4 C C03 PGV . . . JA 13 129.651 113.904 163.235 1 93.73 ? C03 PGV 203 J 1 
HETATM 5 C C04 PGV . . . JA 13 128.095 110.24 163.272 1 93.73 ? C04 PGV 203 J 1 
HETATM 6 C C05 PGV . . . JA 13 127.39 108.893 163.141 1 93.73 ? C05 PGV 203 J 1 
HETATM 7 C C06 PGV . . . JA 13 126.567 108.711 164.441 1 93.73 ? C06 PGV 203 J 1 
HETATM 8 O O01 PGV . . . JA 13 129.248 113.663 160.853 1 93.73 ? O01 PGV 203 J 1 
HETATM 9 O O02 PGV . . . JA 13 127.2 112.898 160.34 1 93.73 ? O02 PGV 203 J 1 
HETATM 10 O O03 PGV . . . JA 13 131.515 115.704 162.765 1 93.73 ? O03 PGV 203 J 1 
HETATM 11 O O04 PGV . . . JA 13 133.319 114.618 163.508 1 93.73 ? O04 PGV 203 J 1 
HETATM 12 O O05 PGV . . . JA 13 128.293 107.85 162.988 1 93.73 ? O05 PGV 203 J 1 
HETATM 13 O O06 PGV . . . JA 13 127.36 107.955 165.304 1 93.73 ? O06 PGV 203 J 1 
HETATM 14 O O11 PGV . . . JA 13 128.984 112.687 163.193 1 93.73 ? O11 PGV 203 J 1 
HETATM 15 O O12 PGV . . . JA 13 128.331 110.497 164.617 1 93.73 ? O12 PGV 203 J 1 
HETATM 16 O O13 PGV . . . JA 13 128.125 112.837 165.552 1 93.73 ? O13 PGV 203 J 1 
HETATM 17 O O14 PGV . . . JA 13 130.489 111.769 165.013 1 93.73 ? O14 PGV 203 J 1 
HETATM 18 C C1 PGV . . . JA 13 128.028 113.79 160.262 1 93.73 ? C1 PGV 203 J 1 
HETATM 19 C C2 PGV . . . JA 13 127.799 115.087 159.521 1 93.73 ? C2 PGV 203 J 1 
HETATM 20 C C3 PGV . . . JA 13 126.334 115.155 159.079 1 93.73 ? C3 PGV 203 J 1 
HETATM 21 C C4 PGV . . . JA 13 126.086 116.37 158.199 1 93.73 ? C4 PGV 203 J 1 
HETATM 22 C C5 PGV . . . JA 13 124.943 117.208 158.758 1 93.73 ? C5 PGV 203 J 1 
HETATM 23 C C6 PGV . . . JA 13 125.337 117.81 160.099 1 93.73 ? C6 PGV 203 J 1 
HETATM 24 C C7 PGV . . . JA 13 124.207 117.649 161.104 1 93.73 ? C7 PGV 203 J 1 
HETATM 25 C C8 PGV . . . JA 13 124.703 117.946 162.512 1 93.73 ? C8 PGV 203 J 1 
HETATM 26 C C9 PGV . . . JA 13 123.66 117.51 163.532 1 93.73 ? C9 PGV 203 J 1 
HETATM 27 C C10 PGV . . . JA 13 122.333 118.192 163.242 1 93.73 ? C10 PGV 203 J 1 
HETATM 28 C C11 PGV . . . JA 13 121.284 117.704 164.181 1 93.73 ? C11 PGV 203 J 1 
HETATM 29 C C19 PGV . . . JA 13 132.859 115.538 162.846 1 93.73 ? C19 PGV 203 J 1 
HETATM 30 C C20 PGV . . . JA 13 133.681 116.55 162.086 1 93.73 ? C20 PGV 203 J 1 
HETATM 31 C C21 PGV . . . JA 13 133.953 117.749 163 1 93.73 ? C21 PGV 203 J 1 
HETATM 32 C C22 PGV . . . JA 13 135.066 117.443 163.996 1 93.73 ? C22 PGV 203 J 1 
HETATM 33 C C23 PGV . . . JA 13 135.389 118.682 164.828 1 93.73 ? C23 PGV 203 J 1 
HETATM 34 C C24 PGV . . . JA 13 136.727 118.509 165.536 1 93.73 ? C24 PGV 203 J 1 
HETATM 35 C C25 PGV . . . JA 13 137.866 118.506 164.526 1 93.73 ? C25 PGV 203 J 1 
HETATM 36 C C26 PGV . . . JA 13 138.213 119.93 164.107 1 93.73 ? C26 PGV 203 J 1 
HETATM 37 C C27 PGV . . . JA 13 138.749 120.716 165.299 1 93.73 ? C27 PGV 203 J 1 
HETATM 38 C C28 PGV . . . JA 13 139.985 121.508 164.898 1 93.73 ? C28 PGV 203 J 1 
HETATM 39 C C29 PGV . . . JA 13 141.098 120.565 164.457 1 93.73 ? C29 PGV 203 J 1 
HETATM 40 C C30 PGV . . . JA 13 142.359 121.35 164.121 1 93.73 ? C30 PGV 203 J 1 
HETATM 41 C C31 PGV . . . JA 13 142.059 122.405 163.063 1 93.73 ? C31 PGV 203 J 1 
HETATM 42 C C32 PGV . . . JA 13 143.309 123.217 162.748 1 93.73 ? C32 PGV 203 J 1 
HETATM 43 C C33 PGV . . . JA 13 144.244 122.43 161.84 1 93.73 ? C33 PGV 203 J 1 
HETATM 44 C C34 PGV . . . JA 13 145.373 123.32 161.357 1 93.73 ? C34 PGV 203 J 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    21 
_model_server_stats.query_time_ms           337 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           44 
#